data_S9F # _chem_comp.id S9F _chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-1$l^{4},3,5,7-tetrazabicyclo[4.3.0]nona-1(6),3,8-trien-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H17 N5 O14 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2023-08-24 _chem_comp.pdbx_modified_date 2024-01-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 524.188 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S9F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8TXO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S9F O13 O1 O 0 1 N N N N N N 123.422 128.215 138.120 0.943 1.512 0.006 O13 S9F 1 S9F O25 O2 O 0 1 N N N N N N 124.178 130.244 130.902 -7.032 -3.254 1.589 O25 S9F 2 S9F C14 C1 C 0 1 N N N N N N 123.486 126.959 137.443 -0.137 2.358 0.408 C14 S9F 3 S9F C15 C2 C 0 1 N N R N N N 122.067 126.574 136.993 -1.387 2.007 -0.401 C15 S9F 4 S9F C16 C3 C 0 1 N N S N N N 122.127 125.754 135.645 -2.533 2.991 -0.072 C16 S9F 5 S9F C17 C4 C 0 1 N N R N N N 120.987 126.379 134.779 -3.802 2.109 -0.093 C17 S9F 6 S9F C19 C5 C 0 1 N N R N N N 120.984 127.633 135.122 -3.273 0.698 -0.432 C19 S9F 7 S9F C21 C6 C 0 1 N N N N N N 122.931 129.060 134.821 -3.660 -0.882 1.513 C21 S9F 8 S9F C22 C7 C 0 1 N N N N N N 123.611 129.626 133.754 -4.613 -1.762 1.845 C22 S9F 9 S9F C24 C8 C 0 1 N N N N N N 123.271 129.569 131.196 -6.706 -2.451 0.730 C24 S9F 10 S9F C27 C9 C 0 1 N N N N N N 121.342 128.231 130.549 -7.156 -1.406 -1.279 C27 S9F 11 S9F C30 C10 C 0 1 N N N N N N 121.959 128.494 132.980 -5.200 -0.880 -0.062 C30 S9F 12 S9F N20 N1 N 0 1 N N N N N N 121.939 128.377 134.355 -4.022 -0.319 0.310 N20 S9F 13 S9F N23 N2 N -1 1 N N N N N N 122.995 129.264 132.645 -5.560 -1.755 0.868 N23 S9F 14 S9F N26 N3 N 0 1 N N N N N N 122.432 129.040 130.196 -7.490 -2.270 -0.338 N26 S9F 15 S9F N28 N4 N 0 1 N N N N N N 120.481 127.682 129.535 -7.966 -1.230 -2.368 N28 S9F 16 S9F N29 N5 N 0 1 N N N N N N 121.083 127.942 131.932 -6.001 -0.690 -1.162 N29 S9F 17 S9F O02 O3 O 0 1 N N N N N N 123.037 127.862 140.671 2.320 1.462 2.121 O02 S9F 18 S9F O03 O4 O 0 1 N N N N N N 124.533 129.693 139.946 3.072 3.029 0.290 O03 S9F 19 S9F O04 O5 O 0 1 N N N N N N 125.379 127.254 139.713 3.336 0.424 0.057 O04 S9F 20 S9F O06 O6 O 0 1 N N N N N N 124.264 124.946 139.919 5.615 0.734 1.095 O06 S9F 21 S9F O07 O7 O 0 1 N N N N N N 126.675 125.110 140.303 4.356 -1.374 1.681 O07 S9F 22 S9F O08 O8 O 0 1 N N N N N N 125.088 126.039 142.066 5.396 -1.020 -0.707 O08 S9F 23 S9F O10 O9 O 0 1 N N N N N N 125.705 128.529 142.396 7.881 -0.720 -0.383 O10 S9F 24 S9F O11 O10 O 0 1 N N N N N N 125.496 127.082 144.405 6.980 -3.076 -0.291 O11 S9F 25 S9F O12 O11 O 0 1 N N N N N N 127.438 126.805 142.852 7.116 -1.750 -2.557 O12 S9F 26 S9F O18 O12 O 0 1 N N N N N N 119.706 125.756 135.145 -4.707 2.560 -1.102 O18 S9F 27 S9F O31 O13 O 0 1 N N N N N N 121.380 127.656 136.738 -1.891 0.711 -0.012 O31 S9F 28 S9F O32 O14 O 0 1 N N N N N N 121.878 124.460 135.872 -2.616 4.012 -1.068 O32 S9F 29 S9F P01 P1 P 0 1 N N N N N N 124.080 128.288 139.652 2.415 1.604 0.651 P01 S9F 30 S9F P05 P2 P 0 1 N N N N N N 125.350 125.796 140.488 4.696 -0.287 0.544 P05 S9F 31 S9F P09 P3 P 0 1 N N N N N N 125.944 127.135 142.948 6.866 -1.622 -0.972 P09 S9F 32 S9F H1 H1 H 0 1 N N N N N N 124.143 127.044 136.565 -0.337 2.210 1.469 H1 S9F 33 S9F H2 H2 H 0 1 N N N N N N 123.881 126.190 138.124 0.132 3.399 0.230 H2 S9F 34 S9F H3 H3 H 0 1 N N N N N N 121.600 125.946 137.766 -1.166 2.026 -1.468 H3 S9F 35 S9F H4 H4 H 0 1 N N N N N N 123.097 125.926 135.156 -2.388 3.429 0.915 H4 S9F 36 S9F H5 H5 H 0 1 N N N N N N 121.207 126.216 133.714 -4.285 2.112 0.884 H5 S9F 37 S9F H6 H6 H 0 1 N N N N N N 119.987 128.088 135.026 -3.343 0.513 -1.504 H6 S9F 38 S9F H8 H8 H 0 1 N N N N N N 123.187 129.171 135.864 -2.774 -0.652 2.086 H8 S9F 39 S9F H9 H9 H 0 1 N N N N N N 124.489 130.252 133.819 -4.628 -2.373 2.736 H9 S9F 40 S9F H10 H10 H 0 1 N N N N N N 120.658 127.876 128.570 -8.787 -1.740 -2.449 H10 S9F 41 S9F H11 H11 H 0 1 N N N N N N 119.706 127.106 129.795 -7.719 -0.595 -3.058 H11 S9F 42 S9F H12 H12 H 0 1 N N N N N N 120.306 127.365 132.184 -5.748 -0.052 -1.848 H12 S9F 43 S9F H13 H13 H 0 1 N N N N N N 124.072 130.022 140.709 3.165 3.190 -0.659 H13 S9F 44 S9F H14 H14 H 0 1 N N N N N N 126.543 124.279 139.862 3.757 -2.075 1.389 H14 S9F 45 S9F H15 H15 H 0 1 N N N N N N 125.160 127.932 144.665 6.343 -3.720 -0.629 H15 S9F 46 S9F H16 H16 H 0 1 N N N N N N 127.901 127.540 142.468 7.984 -2.106 -2.790 H16 S9F 47 S9F H17 H17 H 0 1 N N N N N N 119.009 126.133 134.621 -5.024 3.464 -0.971 H17 S9F 48 S9F H19 H19 H 0 1 N N N N N N 121.918 123.981 135.053 -3.319 4.658 -0.911 H19 S9F 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S9F O13 C14 SING N N 1 S9F O13 P01 SING N N 2 S9F O25 C24 DOUB N N 3 S9F C14 C15 SING N N 4 S9F C15 C16 SING N N 5 S9F C15 O31 SING N N 6 S9F C16 C17 SING N N 7 S9F C16 O32 SING N N 8 S9F C17 C19 SING N N 9 S9F C17 O18 SING N N 10 S9F C19 N20 SING N N 11 S9F C21 C22 DOUB N N 12 S9F C21 N20 SING N N 13 S9F C22 N23 SING N N 14 S9F C24 N23 SING N N 15 S9F C24 N26 SING N N 16 S9F C27 N26 DOUB N N 17 S9F C27 N28 SING N N 18 S9F C27 N29 SING N N 19 S9F C30 N20 SING N N 20 S9F C30 N23 DOUB N N 21 S9F C30 N29 SING N N 22 S9F O02 P01 DOUB N N 23 S9F O03 P01 SING N N 24 S9F O04 P01 SING N N 25 S9F O04 P05 SING N N 26 S9F O06 P05 DOUB N N 27 S9F O07 P05 SING N N 28 S9F O08 P05 SING N N 29 S9F O08 P09 SING N N 30 S9F O10 P09 DOUB N N 31 S9F O11 P09 SING N N 32 S9F O12 P09 SING N N 33 S9F C14 H1 SING N N 34 S9F C14 H2 SING N N 35 S9F C15 H3 SING N N 36 S9F C16 H4 SING N N 37 S9F C17 H5 SING N N 38 S9F C19 H6 SING N N 39 S9F C21 H8 SING N N 40 S9F C22 H9 SING N N 41 S9F N28 H10 SING N N 42 S9F N28 H11 SING N N 43 S9F N29 H12 SING N N 44 S9F O03 H13 SING N N 45 S9F O07 H14 SING N N 46 S9F O11 H15 SING N N 47 S9F O12 H16 SING N N 48 S9F O18 H17 SING N N 49 S9F O32 H19 SING N N 50 S9F C19 O31 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S9F InChI InChI 1.06 "InChI=1S/C10H17N5O14P3/c11-8-12-9-14(1-2-15(9)10(18)13-8)7-6(17)5(16)4(27-7)3-26-31(22,23)29-32(24,25)28-30(19,20)21/h1-2,4-7,16-17H,3H2,(H,22,23)(H,24,25)(H2,19,20,21)(H3,11,12,13,18)/q-1/t4-,5-,6-,7-/m1/s1" S9F InChIKey InChI 1.06 QAJSSYBGBVOZGX-DBRKOABJSA-N S9F SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)[N-]2=C(N1)N(C=C2)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O" S9F SMILES CACTVS 3.385 "NC1=NC(=O)[N-]2=C(N1)N(C=C2)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O" S9F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=CN(C2=[N-]1C(=O)N=C(N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O" S9F SMILES "OpenEye OEToolkits" 2.0.7 "C1=CN(C2=[N-]1C(=O)N=C(N2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O" # _pdbx_chem_comp_identifier.comp_id S9F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-3,5,7-triaza-1-azanuidabicyclo[4.3.0]nona-1(6),3,8-trien-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S9F "Create component" 2023-08-24 RCSB S9F "Initial release" 2024-01-24 RCSB #