data_S9R # _chem_comp.id S9R _chem_comp.name "[(E)-3-(hydroxymethyl)pent-2-enyl] phosphono hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H14 O8 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-04-11 _chem_comp.pdbx_modified_date 2023-09-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 276.118 _chem_comp.one_letter_code ? _chem_comp.three_letter_code S9R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8IZE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal S9R OAM O1 O 0 1 N N N 2.079 20.089 21.865 -4.197 0.805 1.018 OAM S9R 1 S9R PAK P1 P 0 1 N N N 0.849 19.955 20.934 -3.548 -0.445 0.237 PAK S9R 2 S9R OAN O2 O 0 1 N N N 0.085 18.701 21.254 -4.081 -1.819 0.886 OAN S9R 3 S9R OAL O3 O 0 1 N N N 1.206 20.115 19.482 -3.937 -0.391 -1.190 OAL S9R 4 S9R OAJ O4 O 0 1 N N N -0.143 21.149 21.399 -1.944 -0.380 0.359 OAJ S9R 5 S9R PAG P2 P 0 1 N N N -0.832 22.383 20.628 -0.806 0.526 -0.330 PAG S9R 6 S9R OAI O5 O 0 1 N N N -1.648 21.953 19.403 -1.133 0.725 -1.760 OAI S9R 7 S9R OAH O6 O 0 1 N N N -1.604 23.101 21.699 -0.736 1.955 0.408 OAH S9R 8 S9R OAF O7 O 0 1 N N N 0.366 23.280 20.088 0.618 -0.214 -0.204 OAF S9R 9 S9R CAE C1 C 0 1 N N N 1.356 23.817 21.070 1.812 0.287 -0.809 CAE S9R 10 S9R CAC C2 C 0 1 N N N 2.321 24.598 20.259 2.960 -0.639 -0.497 CAC S9R 11 S9R CAB C3 C 0 1 N N N 2.335 26.070 20.407 4.114 -0.148 -0.119 CAB S9R 12 S9R CAD C4 C 0 1 N N N 1.604 26.770 21.559 4.333 1.343 -0.116 CAD S9R 13 S9R CAO C5 C 0 1 N N N 0.447 27.445 20.847 4.029 1.901 1.276 CAO S9R 14 S9R CAA C6 C 0 1 N N N 3.321 26.936 19.591 5.221 -1.073 0.314 CAA S9R 15 S9R OAP O8 O 0 1 N N N 4.053 26.113 18.696 4.773 -2.427 0.224 OAP S9R 16 S9R H1 H1 H 0 1 N N N 2.856 20.252 21.343 -3.984 0.833 1.961 H1 S9R 17 S9R H2 H2 H 0 1 N N N -0.050 18.200 20.458 -5.041 -1.925 0.848 H2 S9R 18 S9R H3 H3 H 0 1 N N N -2.514 23.178 21.437 -0.526 1.900 1.351 H3 S9R 19 S9R H4 H4 H 0 1 N N N 0.857 24.465 21.806 1.675 0.345 -1.889 H4 S9R 20 S9R H5 H5 H 0 1 N N N 1.867 22.995 21.592 2.030 1.280 -0.416 H5 S9R 21 S9R H6 H6 H 0 1 N N N 2.997 24.104 19.577 2.831 -1.708 -0.586 H6 S9R 22 S9R H7 H7 H 0 1 N N N 1.245 26.043 22.302 5.370 1.558 -0.374 H7 S9R 23 S9R H8 H8 H 0 1 N N N 2.253 27.508 22.052 3.672 1.809 -0.846 H8 S9R 24 S9R H9 H9 H 0 1 N N N -0.166 27.992 21.579 2.992 1.686 1.535 H9 S9R 25 S9R H10 H10 H 0 1 N N N 0.838 28.149 20.098 4.690 1.435 2.007 H10 S9R 26 S9R H11 H11 H 0 1 N N N -0.171 26.684 20.348 4.187 2.979 1.278 H11 S9R 27 S9R H12 H12 H 0 1 N N N 4.018 27.441 20.276 6.086 -0.933 -0.335 H12 S9R 28 S9R H13 H13 H 0 1 N N N 2.759 27.689 19.019 5.500 -0.850 1.344 H13 S9R 29 S9R H14 H14 H 0 1 N N N 4.658 26.648 18.196 5.437 -3.079 0.488 H14 S9R 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal S9R OAP CAA SING N N 1 S9R OAI PAG DOUB N N 2 S9R OAL PAK DOUB N N 3 S9R CAA CAB SING N N 4 S9R OAF PAG SING N N 5 S9R OAF CAE SING N N 6 S9R CAC CAB DOUB N E 7 S9R CAC CAE SING N N 8 S9R CAB CAD SING N N 9 S9R PAG OAJ SING N N 10 S9R PAG OAH SING N N 11 S9R CAO CAD SING N N 12 S9R PAK OAN SING N N 13 S9R PAK OAJ SING N N 14 S9R PAK OAM SING N N 15 S9R OAM H1 SING N N 16 S9R OAN H2 SING N N 17 S9R OAH H3 SING N N 18 S9R CAE H4 SING N N 19 S9R CAE H5 SING N N 20 S9R CAC H6 SING N N 21 S9R CAD H7 SING N N 22 S9R CAD H8 SING N N 23 S9R CAO H9 SING N N 24 S9R CAO H10 SING N N 25 S9R CAO H11 SING N N 26 S9R CAA H12 SING N N 27 S9R CAA H13 SING N N 28 S9R OAP H14 SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor S9R InChI InChI 1.06 "InChI=1S/C6H14O8P2/c1-2-6(5-7)3-4-13-16(11,12)14-15(8,9)10/h3,7H,2,4-5H2,1H3,(H,11,12)(H2,8,9,10)/b6-3+" S9R InChIKey InChI 1.06 DIWVCVDIGMPHFB-ZZXKWVIFSA-N S9R SMILES_CANONICAL CACTVS 3.385 "CC\C(CO)=C/CO[P](O)(=O)O[P](O)(O)=O" S9R SMILES CACTVS 3.385 "CCC(CO)=CCO[P](O)(=O)O[P](O)(O)=O" S9R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC/C(=C\COP(=O)(O)OP(=O)(O)O)/CO" S9R SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=CCOP(=O)(O)OP(=O)(O)O)CO" # _pdbx_chem_comp_identifier.comp_id S9R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(~{E})-3-(hydroxymethyl)pent-2-enyl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site S9R "Create component" 2023-04-11 PDBJ S9R "Initial release" 2023-09-13 RCSB #