data_SA8 # _chem_comp.id SA8 _chem_comp.name "S-5'-AZAMETHIONINE-5'-DEOXYADENOSINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H23 N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "5'-[N-[(3S)-3-AMINO-3-CARBOXYPROPYL]-N-METHYLAMINO]-5'-DEOXYADENOSINE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-03-16 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 381.387 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SA8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1Z3C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SA8 N N N 0 1 N N N 13.352 30.167 91.233 -6.637 -0.282 0.811 N SA8 1 SA8 CA CA C 0 1 N N S 13.972 31.091 92.234 -5.767 0.879 0.583 CA SA8 2 SA8 C C C 0 1 N N N 13.194 32.390 92.354 -6.547 1.964 -0.113 C SA8 3 SA8 O O O 0 1 N N N 12.194 32.558 91.653 -6.115 3.234 -0.072 O SA8 4 SA8 OXT OXT O 0 1 N N N 13.666 33.223 93.201 -7.563 1.690 -0.708 OXT SA8 5 SA8 CB CB C 0 1 N N N 15.411 31.433 91.853 -4.581 0.463 -0.290 CB SA8 6 SA8 CG CG C 0 1 N N N 15.929 30.538 90.805 -3.718 -0.547 0.468 CG SA8 7 SA8 ND ND N 0 1 N N N 17.611 30.833 90.235 -2.580 -0.946 -0.371 ND SA8 8 SA8 CE CE C 0 1 N N N 17.431 32.339 89.277 -3.103 -1.881 -1.375 CE SA8 9 SA8 "C5'" C5* C 0 1 N N N 17.804 29.604 89.059 -1.671 -1.715 0.490 "C5'" SA8 10 SA8 "C4'" C4* C 0 1 N N R 18.004 28.225 89.627 -0.350 -1.951 -0.246 "C4'" SA8 11 SA8 "O4'" O4* O 0 1 N N N 18.056 27.354 88.499 0.334 -0.701 -0.434 "O4'" SA8 12 SA8 "C3'" C3* C 0 1 N N S 19.393 28.023 90.250 0.566 -2.856 0.600 "C3'" SA8 13 SA8 "O3'" O3* O 0 1 N N N 19.148 27.926 91.688 0.883 -4.058 -0.106 "O3'" SA8 14 SA8 "C2'" C2* C 0 1 N N R 19.871 26.674 89.734 1.842 -2.002 0.818 "C2'" SA8 15 SA8 "O2'" O2* O 0 1 N N N 20.478 25.730 90.581 3.019 -2.803 0.695 "O2'" SA8 16 SA8 "C1'" C1* C 0 1 N N R 18.633 26.200 88.953 1.749 -0.977 -0.342 "C1'" SA8 17 SA8 N9 N9 N 0 1 Y N N 18.914 25.337 87.839 2.492 0.243 -0.018 N9 SA8 18 SA8 C8 C8 C 0 1 Y N N 19.720 25.536 86.755 1.995 1.349 0.605 C8 SA8 19 SA8 N7 N7 N 0 1 Y N N 19.733 24.530 85.926 2.931 2.245 0.734 N7 SA8 20 SA8 C5 C5 C 0 1 Y N N 18.873 23.605 86.505 4.084 1.771 0.204 C5 SA8 21 SA8 C6 C6 C 0 1 Y N N 18.449 22.299 86.113 5.387 2.278 0.061 C6 SA8 22 SA8 N6 N6 N 0 1 N N N 18.889 21.711 84.971 5.710 3.542 0.523 N6 SA8 23 SA8 N1 N1 N 0 1 Y N N 17.559 21.614 86.922 6.302 1.515 -0.528 N1 SA8 24 SA8 C2 C2 C 0 1 Y N N 17.132 22.224 88.061 6.003 0.308 -0.972 C2 SA8 25 SA8 N3 N3 N 0 1 Y N N 17.475 23.450 88.524 4.797 -0.208 -0.859 N3 SA8 26 SA8 C4 C4 C 0 1 Y N N 18.356 24.092 87.686 3.818 0.479 -0.279 C4 SA8 27 SA8 HN1 1HN H 0 1 N N N 13.242 30.620 90.326 -6.951 -0.592 -0.097 HN1 SA8 28 SA8 HN2 2HN H 0 1 N N N 13.875 29.295 91.152 -6.052 -1.016 1.181 HN2 SA8 29 SA8 HA HA H 0 1 N N N 13.954 30.554 93.211 -5.400 1.252 1.540 HA SA8 30 SA8 HO HO H 0 1 N N N 11.707 33.371 91.728 -6.616 3.930 -0.518 HO SA8 31 SA8 HB1 1HB H 0 1 N N N 16.077 31.438 92.747 -3.983 1.342 -0.533 HB1 SA8 32 SA8 HB2 2HB H 0 1 N N N 15.508 32.503 91.556 -4.949 0.009 -1.210 HB2 SA8 33 SA8 HG1 1HG H 0 1 N N N 15.234 30.546 89.933 -4.316 -1.426 0.711 HG1 SA8 34 SA8 HG2 2HG H 0 1 N N N 15.830 29.479 91.139 -3.350 -0.093 1.388 HG2 SA8 35 SA8 HE1 1HE H 0 1 N N N 16.964 33.191 89.824 -2.291 -2.208 -2.025 HE1 SA8 36 SA8 HE2 2HE H 0 1 N N N 18.473 32.522 88.924 -3.538 -2.746 -0.875 HE2 SA8 37 SA8 HE3 3HE H 0 1 N N N 16.662 32.294 88.471 -3.868 -1.384 -1.971 HE3 SA8 38 SA8 "H5'1" 1H5* H 0 0 N N N 18.635 29.861 88.361 -1.482 -1.159 1.408 "H5'1" SA8 39 SA8 "H5'2" 2H5* H 0 0 N N N 16.947 29.610 88.346 -2.127 -2.675 0.734 "H5'2" SA8 40 SA8 "H4'" H4* H 0 1 N N N 17.203 28.052 90.383 -0.542 -2.417 -1.212 "H4'" SA8 41 SA8 "H3'" H3* H 0 1 N N N 20.132 28.824 90.017 0.095 -3.089 1.555 "H3'" SA8 42 SA8 H2 H2 H 0 1 N N N 20.007 27.801 92.073 1.504 -4.551 0.447 H2 SA8 43 SA8 "H2'" H2* H 0 1 N N N 20.808 26.800 89.142 1.815 -1.499 1.784 "H2'" SA8 44 SA8 H1 H1 H 0 1 N N N 20.777 24.888 90.259 3.018 -3.417 1.443 H1 SA8 45 SA8 "H1'" H1* H 0 1 N N N 17.988 25.585 89.622 2.116 -1.414 -1.270 "H1'" SA8 46 SA8 H8 H8 H 0 1 N N N 20.317 26.443 86.563 0.975 1.466 0.941 H8 SA8 47 SA8 HN61 1HN6 H 0 0 N N N 19.909 21.713 84.994 5.033 4.089 0.951 HN61 SA8 48 SA8 HN62 2HN6 H 0 0 N N N 18.586 20.778 84.691 6.613 3.881 0.418 HN62 SA8 49 SA8 H3 H3 H 0 1 N N N 16.422 21.656 88.685 6.777 -0.278 -1.445 H3 SA8 50 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SA8 N CA SING N N 1 SA8 N HN1 SING N N 2 SA8 N HN2 SING N N 3 SA8 CA C SING N N 4 SA8 CA CB SING N N 5 SA8 CA HA SING N N 6 SA8 C O SING N N 7 SA8 C OXT DOUB N N 8 SA8 O HO SING N N 9 SA8 CB CG SING N N 10 SA8 CB HB1 SING N N 11 SA8 CB HB2 SING N N 12 SA8 CG ND SING N N 13 SA8 CG HG1 SING N N 14 SA8 CG HG2 SING N N 15 SA8 ND CE SING N N 16 SA8 ND "C5'" SING N N 17 SA8 CE HE1 SING N N 18 SA8 CE HE2 SING N N 19 SA8 CE HE3 SING N N 20 SA8 "C5'" "C4'" SING N N 21 SA8 "C5'" "H5'1" SING N N 22 SA8 "C5'" "H5'2" SING N N 23 SA8 "C4'" "O4'" SING N N 24 SA8 "C4'" "C3'" SING N N 25 SA8 "C4'" "H4'" SING N N 26 SA8 "O4'" "C1'" SING N N 27 SA8 "C3'" "O3'" SING N N 28 SA8 "C3'" "C2'" SING N N 29 SA8 "C3'" "H3'" SING N N 30 SA8 "O3'" H2 SING N N 31 SA8 "C2'" "O2'" SING N N 32 SA8 "C2'" "C1'" SING N N 33 SA8 "C2'" "H2'" SING N N 34 SA8 "O2'" H1 SING N N 35 SA8 "C1'" N9 SING N N 36 SA8 "C1'" "H1'" SING N N 37 SA8 N9 C8 SING Y N 38 SA8 N9 C4 SING Y N 39 SA8 C8 N7 DOUB Y N 40 SA8 C8 H8 SING N N 41 SA8 N7 C5 SING Y N 42 SA8 C5 C6 SING Y N 43 SA8 C5 C4 DOUB Y N 44 SA8 C6 N6 SING N N 45 SA8 C6 N1 DOUB Y N 46 SA8 N6 HN61 SING N N 47 SA8 N6 HN62 SING N N 48 SA8 N1 C2 SING Y N 49 SA8 C2 N3 DOUB Y N 50 SA8 C2 H3 SING N N 51 SA8 N3 C4 SING Y N 52 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SA8 SMILES ACDLabs 10.04 "O=C(O)C(N)CCN(C)CC3OC(n2cnc1c(ncnc12)N)C(O)C3O" SA8 SMILES_CANONICAL CACTVS 3.341 "CN(CC[C@H](N)C(O)=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" SA8 SMILES CACTVS 3.341 "CN(CC[CH](N)C(O)=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" SA8 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[N@@](CC[C@@H](C(=O)O)N)C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" SA8 SMILES "OpenEye OEToolkits" 1.5.0 "CN(CCC(C(=O)O)N)CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" SA8 InChI InChI 1.03 "InChI=1S/C15H23N7O5/c1-21(3-2-7(16)15(25)26)4-8-10(23)11(24)14(27-8)22-6-20-9-12(17)18-5-19-13(9)22/h5-8,10-11,14,23-24H,2-4,16H2,1H3,(H,25,26)(H2,17,18,19)/t7-,8+,10+,11+,14+/m0/s1" SA8 InChIKey InChI 1.03 JISVTSUBJCPLSV-TWBCTODHSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SA8 "SYSTEMATIC NAME" ACDLabs 10.04 "5'-{[(3S)-3-amino-3-carboxypropyl](methyl)amino}-5'-deoxyadenosine" SA8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl-methyl-amino]butanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SA8 "Create component" 2005-03-16 RCSB SA8 "Modify descriptor" 2011-06-04 RCSB SA8 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id SA8 _pdbx_chem_comp_synonyms.name "5'-[N-[(3S)-3-AMINO-3-CARBOXYPROPYL]-N-METHYLAMINO]-5'-DEOXYADENOSINE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##