data_SAI # _chem_comp.id SAI _chem_comp.name S-ADENOSYL-L-HOMOSELENOCYSTEINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H20 N6 O5 Se" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-05-16 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 431.306 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SAI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1IM8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SAI N N N 0 1 N N N 14.054 47.480 0.798 0.620 0.972 6.612 N SAI 1 SAI CA CA C 0 1 N N S 15.180 47.581 -0.155 -0.725 0.745 6.069 CA SAI 2 SAI CB CB C 0 1 N N N 14.661 48.036 -1.558 -0.637 -0.192 4.864 CB SAI 3 SAI CG CG C 0 1 N N N 13.616 47.051 -2.121 0.245 0.440 3.788 CG SAI 4 SAI SE SE SE 0 0 N N N 13.866 46.573 -3.996 0.358 -0.761 2.243 SE SAI 5 SAI C C C 0 1 N N N 16.228 48.573 0.367 -1.596 0.121 7.129 C SAI 6 SAI O O O 0 1 N N N 15.985 49.167 1.445 -1.104 -0.588 7.974 O SAI 7 SAI OXT OXT O 0 1 N N N 17.260 48.767 -0.312 -2.917 0.355 7.135 OXT SAI 8 SAI "C5'" C5* C 0 1 N N N 12.391 45.376 -4.108 1.524 0.414 1.196 "C5'" SAI 9 SAI "C4'" C4* C 0 1 N N S 12.653 44.125 -3.344 1.836 -0.242 -0.149 "C4'" SAI 10 SAI "O4'" O4* O 0 1 N N N 11.452 43.409 -3.522 0.620 -0.434 -0.892 "O4'" SAI 11 SAI "C3'" C3* C 0 1 N N S 13.860 43.169 -3.899 2.747 0.677 -0.984 "C3'" SAI 12 SAI "O3'" O3* O 0 1 N N N 14.962 42.854 -2.977 3.982 0.027 -1.288 "O3'" SAI 13 SAI "C2'" C2* C 0 1 N N R 13.043 41.941 -4.333 1.935 0.934 -2.281 "C2'" SAI 14 SAI "O2'" O2* O 0 1 N N N 13.735 40.665 -4.369 2.785 0.899 -3.429 "O2'" SAI 15 SAI "C1'" C1* C 0 1 N N R 11.848 42.063 -3.363 0.947 -0.260 -2.288 "C1'" SAI 16 SAI N9 N9 N 0 1 Y N N 10.571 41.412 -3.634 -0.252 0.063 -3.063 N9 SAI 17 SAI C8 C8 C 0 1 Y N N 9.694 41.626 -4.744 -1.361 0.708 -2.601 C8 SAI 18 SAI N7 N7 N 0 1 Y N N 8.625 40.893 -4.640 -2.235 0.829 -3.557 N7 SAI 19 SAI C5 C5 C 0 1 Y N N 8.778 40.161 -3.449 -1.745 0.270 -4.690 C5 SAI 20 SAI C6 C6 C 0 1 Y N N 7.962 39.222 -2.781 -2.228 0.106 -5.999 C6 SAI 21 SAI N6 N6 N 0 1 N N N 6.772 38.845 -3.290 -3.479 0.577 -6.357 N6 SAI 22 SAI N1 N1 N 0 1 Y N N 8.403 38.666 -1.588 -1.454 -0.510 -6.886 N1 SAI 23 SAI C2 C2 C 0 1 Y N N 9.597 39.069 -1.101 -0.258 -0.962 -6.554 C2 SAI 24 SAI N3 N3 N 0 1 Y N N 10.442 39.950 -1.633 0.233 -0.831 -5.340 N3 SAI 25 SAI C4 C4 C 0 1 Y N N 9.973 40.476 -2.809 -0.465 -0.223 -4.387 C4 SAI 26 SAI HN1 1HN H 0 1 N N N 14.392 47.183 1.713 0.979 0.069 6.885 HN1 SAI 27 SAI HN2 2HN H 0 1 N N N 13.313 46.871 0.449 1.192 1.291 5.844 HN2 SAI 28 SAI HA HA H 0 1 N N N 15.654 46.577 -0.256 -1.156 1.697 5.758 HA SAI 29 SAI HB1 1HB H 0 1 N N N 14.265 49.077 -1.528 -0.206 -1.144 5.175 HB1 SAI 30 SAI HB2 2HB H 0 1 N N N 15.502 48.191 -2.273 -1.636 -0.361 4.461 HB2 SAI 31 SAI HG1 1HG H 0 1 N N N 13.573 46.132 -1.491 -0.185 1.392 3.477 HG1 SAI 32 SAI HG2 2HG H 0 1 N N N 12.586 47.445 -1.957 1.244 0.609 4.190 HG2 SAI 33 SAI HXT HXT H 0 1 N N N 17.908 49.381 0.011 -3.476 -0.045 7.816 HXT SAI 34 SAI "H5'1" 1H5* H 0 0 N N N 11.442 45.863 -3.783 1.023 1.367 1.027 "H5'1" SAI 35 SAI "H5'2" 2H5* H 0 0 N N N 12.118 45.159 -5.167 2.453 0.584 1.741 "H5'2" SAI 36 SAI "H4'" H4* H 0 1 N N N 12.961 44.392 -2.306 2.326 -1.202 0.011 "H4'" SAI 37 SAI "H3'" H3* H 0 1 N N N 14.463 43.667 -4.693 2.929 1.614 -0.456 "H3'" SAI 38 SAI "HO3'" *HO3 H 0 0 N N N 15.662 42.299 -3.299 4.481 0.627 -1.859 "HO3'" SAI 39 SAI "H2'" H2* H 0 1 N N N 12.758 41.942 -5.411 1.399 1.881 -2.225 "H2'" SAI 40 SAI "HO2'" *HO2 H 0 0 N N N 13.230 39.906 -4.637 3.373 1.664 -3.365 "HO2'" SAI 41 SAI "H1'" H1* H 0 1 N N N 12.238 41.625 -2.414 1.429 -1.154 -2.684 "H1'" SAI 42 SAI H8 H8 H 0 1 N N N 9.830 42.299 -5.607 -1.493 1.067 -1.591 H8 SAI 43 SAI HN61 1HN6 H 0 0 N N N 6.182 38.166 -2.807 -3.800 0.457 -7.265 HN61 SAI 44 SAI HN62 2HN6 H 0 0 N N N 6.927 38.508 -4.240 -4.034 1.026 -5.701 HN62 SAI 45 SAI H2 H2 H 0 1 N N N 9.923 38.621 -0.147 0.336 -1.458 -7.306 H2 SAI 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SAI N CA SING N N 1 SAI N HN1 SING N N 2 SAI N HN2 SING N N 3 SAI CA CB SING N N 4 SAI CA C SING N N 5 SAI CA HA SING N N 6 SAI CB CG SING N N 7 SAI CB HB1 SING N N 8 SAI CB HB2 SING N N 9 SAI CG SE SING N N 10 SAI CG HG1 SING N N 11 SAI CG HG2 SING N N 12 SAI SE "C5'" SING N N 13 SAI C O DOUB N N 14 SAI C OXT SING N N 15 SAI OXT HXT SING N N 16 SAI "C5'" "C4'" SING N N 17 SAI "C5'" "H5'1" SING N N 18 SAI "C5'" "H5'2" SING N N 19 SAI "C4'" "O4'" SING N N 20 SAI "C4'" "C3'" SING N N 21 SAI "C4'" "H4'" SING N N 22 SAI "O4'" "C1'" SING N N 23 SAI "C3'" "O3'" SING N N 24 SAI "C3'" "C2'" SING N N 25 SAI "C3'" "H3'" SING N N 26 SAI "O3'" "HO3'" SING N N 27 SAI "C2'" "O2'" SING N N 28 SAI "C2'" "C1'" SING N N 29 SAI "C2'" "H2'" SING N N 30 SAI "O2'" "HO2'" SING N N 31 SAI "C1'" N9 SING N N 32 SAI "C1'" "H1'" SING N N 33 SAI N9 C8 SING Y N 34 SAI N9 C4 SING Y N 35 SAI C8 N7 DOUB Y N 36 SAI C8 H8 SING N N 37 SAI N7 C5 SING Y N 38 SAI C5 C6 SING Y N 39 SAI C5 C4 DOUB Y N 40 SAI C6 N6 SING N N 41 SAI C6 N1 DOUB Y N 42 SAI N6 HN61 SING N N 43 SAI N6 HN62 SING N N 44 SAI N1 C2 SING Y N 45 SAI C2 N3 DOUB Y N 46 SAI C2 H2 SING N N 47 SAI N3 C4 SING Y N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SAI SMILES ACDLabs 10.04 "O=C(O)C(N)CC[Se]CC3OC(n2cnc1c(ncnc12)N)C(O)C3O" SAI SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CC[Se]C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)C(O)=O" SAI SMILES CACTVS 3.341 "N[CH](CC[Se]C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(O)=O" SAI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)C[Se]CC[C@@H](C(=O)O)N)O)O)N" SAI SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)C[Se]CCC(C(=O)O)N)O)O)N" SAI InChI InChI 1.03 "InChI=1S/C14H20N6O5Se/c15-6(14(23)24)1-2-26-3-7-9(21)10(22)13(25-7)20-5-19-8-11(16)17-4-18-12(8)20/h4-7,9-10,13,21-22H,1-3,15H2,(H,23,24)(H2,16,17,18)/t6-,7+,9+,10+,13+/m0/s1" SAI InChIKey InChI 1.03 UVSMMLABJBJNGH-WFMPWKQPSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SAI "SYSTEMATIC NAME" ACDLabs 10.04 "5'-Se-[(3S)-3-amino-3-carboxypropyl]-5'-selenoadenosine" SAI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-4-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methylselanyl]butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SAI "Create component" 2001-05-16 RCSB SAI "Modify descriptor" 2011-06-04 RCSB #