data_SAM # _chem_comp.id SAM _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAC _chem_comp.formula "C15 H22 N6 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 398.437 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SAM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1CMC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SAM N N N 0 1 N N N -27.077 24.904 45.687 -6.815 -0.436 0.939 N SAM 1 SAM CA CA C 0 1 N N S -28.110 25.968 45.360 -6.177 0.858 0.661 CA SAM 2 SAM C C C 0 1 N N N -29.216 25.950 46.423 -7.164 1.767 -0.026 C SAM 3 SAM O O O 0 1 N N N -29.253 24.910 47.107 -8.035 1.295 -0.737 O SAM 4 SAM OXT OXT O -1 1 N N N -30.029 26.837 46.753 -7.091 2.974 0.130 OXT SAM 5 SAM CB CB C 0 1 N N N -28.628 25.736 43.935 -4.964 0.644 -0.246 CB SAM 6 SAM CG CG C 0 1 N N N -29.842 26.488 43.429 -3.908 -0.176 0.499 CG SAM 7 SAM SD SD S 1 1 N N S -29.737 28.269 43.836 -2.469 -0.429 -0.576 SD SAM 8 SAM CE CE C 0 1 N N N -31.441 28.679 44.165 -3.103 -1.751 -1.644 CE SAM 9 SAM "C5'" C5* C 0 1 N N N -29.475 28.953 42.169 -1.413 -1.400 0.534 "C5'" SAM 10 SAM "C4'" C4* C 0 1 N N S -29.572 30.475 42.206 -0.103 -1.741 -0.177 "C4'" SAM 11 SAM "O4'" O4* O 0 1 N N N -29.031 30.956 43.442 0.656 -0.542 -0.407 "O4'" SAM 12 SAM "C3'" C3* C 0 1 N N S -28.682 31.245 41.233 0.752 -2.664 0.713 "C3'" SAM 13 SAM "O3'" O3* O 0 1 N N N -29.371 31.423 40.002 1.004 -3.909 0.058 "O3'" SAM 14 SAM "C2'" C2* C 0 1 N N R -28.546 32.662 41.810 2.075 -1.877 0.910 "C2'" SAM 15 SAM "O2'" O2* O 0 1 N N N -29.244 33.644 41.146 3.203 -2.751 0.832 "O2'" SAM 16 SAM "C1'" C1* C 0 1 N N R -28.874 32.379 43.239 2.050 -0.896 -0.290 "C1'" SAM 17 SAM N9 N9 N 0 1 Y N N -27.744 32.757 44.049 2.862 0.290 -0.006 N9 SAM 18 SAM C8 C8 C 0 1 Y N N -27.998 33.524 45.159 2.426 1.448 0.567 C8 SAM 19 SAM N7 N7 N 0 1 Y N N -26.868 33.759 45.806 3.411 2.292 0.670 N7 SAM 20 SAM C5 C5 C 0 1 Y N N -25.877 33.152 45.067 4.539 1.731 0.172 C5 SAM 21 SAM C6 C6 C 0 1 Y N N -24.477 33.101 45.296 5.870 2.155 0.022 C6 SAM 22 SAM N6 N6 N 0 1 N N N -23.850 33.668 46.347 6.263 3.415 0.438 N6 SAM 23 SAM N1 N1 N 0 1 Y N N -23.815 32.413 44.412 6.744 1.317 -0.527 N1 SAM 24 SAM C2 C2 C 0 1 Y N N -24.381 31.757 43.359 6.378 0.112 -0.925 C2 SAM 25 SAM N3 N3 N 0 1 Y N N -25.656 31.812 43.055 5.143 -0.327 -0.805 N3 SAM 26 SAM C4 C4 C 0 1 Y N N -26.393 32.486 43.978 4.201 0.438 -0.263 C4 SAM 27 SAM HN1 1HN H 0 1 N N N -26.341 24.916 44.980 -7.662 -0.238 1.449 HN1 SAM 28 SAM HN2 2HN H 0 1 N N N -27.495 23.979 45.792 -7.095 -0.819 0.048 HN2 SAM 29 SAM HA HA H 0 1 N N N -27.662 26.989 45.384 -5.855 1.313 1.598 HA SAM 30 SAM HB1 1HB H 0 1 N N N -27.786 25.910 43.224 -4.543 1.610 -0.524 HB1 SAM 31 SAM HB2 2HB H 0 1 N N N -28.812 24.644 43.802 -5.271 0.109 -1.145 HB2 SAM 32 SAM HG1 1HG H 0 1 N N N -29.998 26.326 42.336 -4.328 -1.142 0.778 HG1 SAM 33 SAM HG2 2HG H 0 1 N N N -30.789 26.037 43.806 -3.600 0.359 1.398 HG2 SAM 34 SAM HE1 1HE H 0 1 N N N -31.377 29.764 44.413 -2.339 -2.030 -2.370 HE1 SAM 35 SAM HE2 2HE H 0 1 N N N -32.153 28.423 43.346 -3.359 -2.619 -1.035 HE2 SAM 36 SAM HE3 3HE H 0 1 N N N -31.937 28.047 44.938 -3.992 -1.400 -2.169 HE3 SAM 37 SAM "H5'1" 1H5* H 0 0 N N N -28.513 28.606 41.722 -1.199 -0.819 1.432 "H5'1" SAM 38 SAM "H5'2" 2H5* H 0 0 N N N -30.172 28.508 41.421 -1.927 -2.320 0.811 "H5'2" SAM 39 SAM "H4'" H4* H 0 1 N N N -30.653 30.641 41.993 -0.314 -2.234 -1.127 "H4'" SAM 40 SAM "H3'" H3* H 0 1 N N N -27.715 30.708 41.087 0.261 -2.831 1.672 "H3'" SAM 41 SAM "HO3'" *HO3 H 0 0 N N N -28.817 31.902 39.396 1.590 -4.416 0.637 "HO3'" SAM 42 SAM "H2'" H2* H 0 1 N N N -27.549 33.148 41.689 2.069 -1.336 1.856 "H2'" SAM 43 SAM "HO2'" *HO2 H 0 0 N N N -29.159 34.520 41.502 3.160 -3.333 1.603 "HO2'" SAM 44 SAM "H1'" H1* H 0 1 N N N -29.805 32.932 43.503 2.399 -1.390 -1.197 "H1'" SAM 45 SAM H8 H8 H 0 1 N N N -28.980 33.901 45.487 1.412 1.637 0.887 H8 SAM 46 SAM HN61 1HN6 H 0 0 N N N -22.844 33.631 46.511 5.616 4.017 0.837 HN61 SAM 47 SAM HN62 2HN6 H 0 0 N N N -24.300 33.308 47.188 7.185 3.696 0.329 HN62 SAM 48 SAM H2 H2 H 0 1 N N N -23.756 31.131 42.699 7.120 -0.537 -1.367 H2 SAM 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SAM N CA SING N N 1 SAM N HN1 SING N N 2 SAM N HN2 SING N N 3 SAM CA C SING N N 4 SAM CA CB SING N N 5 SAM CA HA SING N N 6 SAM C O DOUB N N 7 SAM C OXT SING N N 8 SAM CB CG SING N N 9 SAM CB HB1 SING N N 10 SAM CB HB2 SING N N 11 SAM CG SD SING N N 12 SAM CG HG1 SING N N 13 SAM CG HG2 SING N N 14 SAM SD CE SING N N 15 SAM SD "C5'" SING N N 16 SAM CE HE1 SING N N 17 SAM CE HE2 SING N N 18 SAM CE HE3 SING N N 19 SAM "C5'" "C4'" SING N N 20 SAM "C5'" "H5'1" SING N N 21 SAM "C5'" "H5'2" SING N N 22 SAM "C4'" "O4'" SING N N 23 SAM "C4'" "C3'" SING N N 24 SAM "C4'" "H4'" SING N N 25 SAM "O4'" "C1'" SING N N 26 SAM "C3'" "O3'" SING N N 27 SAM "C3'" "C2'" SING N N 28 SAM "C3'" "H3'" SING N N 29 SAM "O3'" "HO3'" SING N N 30 SAM "C2'" "O2'" SING N N 31 SAM "C2'" "C1'" SING N N 32 SAM "C2'" "H2'" SING N N 33 SAM "O2'" "HO2'" SING N N 34 SAM "C1'" N9 SING N N 35 SAM "C1'" "H1'" SING N N 36 SAM N9 C8 SING Y N 37 SAM N9 C4 SING Y N 38 SAM C8 N7 DOUB Y N 39 SAM C8 H8 SING N N 40 SAM N7 C5 SING Y N 41 SAM C5 C6 SING Y N 42 SAM C5 C4 DOUB Y N 43 SAM C6 N6 SING N N 44 SAM C6 N1 DOUB Y N 45 SAM N6 HN61 SING N N 46 SAM N6 HN62 SING N N 47 SAM N1 C2 SING Y N 48 SAM C2 N3 DOUB Y N 49 SAM C2 H2 SING N N 50 SAM N3 C4 SING Y N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SAM SMILES ACDLabs 10.04 "[O-]C(=O)C(N)CC[S+](C)CC3OC(n2cnc1c(ncnc12)N)C(O)C3O" SAM SMILES_CANONICAL CACTVS 3.341 "C[S@@+](CC[C@H](N)C([O-])=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" SAM SMILES CACTVS 3.341 "C[S+](CC[CH](N)C([O-])=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" SAM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[S@@+](CC[C@@H](C(=O)[O-])N)C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" SAM SMILES "OpenEye OEToolkits" 1.5.0 "C[S+](CCC(C(=O)[O-])N)CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" SAM InChI InChI 1.03 "InChI=1S/C15H22N6O5S/c1-27(3-2-7(16)15(24)25)4-8-10(22)11(23)14(26-8)21-6-20-9-12(17)18-5-19-13(9)21/h5-8,10-11,14,22-23H,2-4,16H2,1H3,(H2-,17,18,19,24,25)/t7-,8+,10+,11+,14+,27-/m0/s1" SAM InChIKey InChI 1.03 MEFKEPWMEQBLKI-FCKMPRQPSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SAM "SYSTEMATIC NAME" ACDLabs 10.04 "(2S)-2-amino-4-[{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}(methyl)sulfonio]butanoate (non-preferred name)" SAM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-4-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl-methyl-sulfonio]butanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SAM "Create component" 1999-07-08 PDBJ SAM "Modify descriptor" 2011-06-04 RCSB #