data_SCA # _chem_comp.id SCA _chem_comp.name "SUCCINYL-COENZYME A" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H40 N7 O19 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 867.607 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SCA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4REQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SCA C8 C8 C 0 1 Y N N -26.858 111.864 41.911 -3.855 -0.737 -4.570 C8 SCA 1 SCA N9 N9 N 0 1 Y N N -28.073 112.475 42.088 -3.593 -0.866 -5.902 N9 SCA 2 SCA C4 C4 C 0 1 Y N N -28.316 113.144 40.913 -4.752 -1.279 -6.510 C4 SCA 3 SCA C5 C5 C 0 1 Y N N -27.224 112.900 40.095 -5.706 -1.399 -5.485 C5 SCA 4 SCA N7 N7 N 0 1 Y N N -26.305 112.083 40.739 -5.095 -1.050 -4.328 N7 SCA 5 SCA N3 N3 N 0 1 Y N N -29.396 113.898 40.607 -5.103 -1.574 -7.757 N3 SCA 6 SCA C2 C2 C 0 1 Y N N -29.276 114.397 39.375 -6.330 -1.963 -8.035 C2 SCA 7 SCA N1 N1 N 0 1 Y N N -28.293 114.237 38.494 -7.262 -2.084 -7.107 N1 SCA 8 SCA C6 C6 C 0 1 Y N N -27.219 113.484 38.817 -7.002 -1.817 -5.831 C6 SCA 9 SCA N6 N6 N 0 1 N N N -26.256 113.353 37.903 -7.985 -1.947 -4.866 N6 SCA 10 SCA "C1'" "C1'" C 0 1 N N R -28.921 112.404 43.283 -2.313 -0.605 -6.563 "C1'" SCA 11 SCA "C2'" "C2'" C 0 1 N N R -29.738 111.110 43.349 -2.176 0.896 -6.922 "C2'" SCA 12 SCA "O2'" "O2'" O 0 1 N N N -30.936 111.248 42.628 -2.775 1.174 -8.189 "O2'" SCA 13 SCA "C3'" "C3'" C 0 1 N N S -29.954 110.951 44.848 -0.637 1.076 -6.988 "C3'" SCA 14 SCA "O3'" "O3'" O 0 1 N N N -31.012 111.804 45.280 -0.182 1.006 -8.341 "O3'" SCA 15 SCA "C4'" "C4'" C 0 1 N N R -28.625 111.431 45.420 -0.087 -0.104 -6.165 "C4'" SCA 16 SCA "O4'" "O4'" O 0 1 N N N -28.090 112.373 44.439 -1.215 -0.835 -5.654 "O4'" SCA 17 SCA "C5'" "C5'" C 0 1 N N N -27.624 110.328 45.687 0.761 0.419 -5.004 "C5'" SCA 18 SCA "O5'" "O5'" O 0 1 N N N -27.191 109.745 44.427 1.260 -0.681 -4.243 "O5'" SCA 19 SCA P1 P1 P 0 1 N N R -27.346 108.173 44.187 2.138 -0.059 -3.046 P1 SCA 20 SCA O11 O11 O 0 1 N N N -27.023 107.849 42.807 1.210 0.890 -2.136 O11 SCA 21 SCA O12 O12 O 0 1 N N N -28.656 107.773 44.739 3.251 0.734 -3.612 O12 SCA 22 SCA O6 O6 O 0 1 N N N -26.177 107.601 45.133 2.735 -1.251 -2.143 O6 SCA 23 SCA P2 P2 P 0 1 N N R -26.195 106.859 46.560 3.598 -0.561 -0.972 P2 SCA 24 SCA O21 O21 O 0 1 N N N -27.006 107.581 47.527 2.722 0.319 -0.167 O21 SCA 25 SCA O22 O22 O 0 1 N N N -24.805 106.416 46.851 4.784 0.311 -1.623 O22 SCA 26 SCA O7 O7 O 0 1 N N N -27.008 105.562 46.137 4.227 -1.701 -0.026 O7 SCA 27 SCA CPB CPB C 0 1 N N N -26.377 104.539 45.307 4.977 -1.029 0.987 CPB SCA 28 SCA CPA CPA C 0 1 N N N -27.345 103.349 45.230 5.606 -2.061 1.926 CPA SCA 29 SCA CP7 CP7 C 0 1 N N R -27.742 103.032 46.727 6.408 -1.341 3.011 CP7 SCA 30 SCA CP9 CP9 C 0 1 N N N -26.672 102.059 44.845 4.502 -2.896 2.577 CP9 SCA 31 SCA CP8 CP8 C 0 1 N N N -28.576 103.671 44.404 6.535 -2.977 1.127 CP8 SCA 32 SCA OP3 OP3 O 0 1 N N N -28.709 102.012 46.708 7.521 -0.672 2.415 OP3 SCA 33 SCA CP6 CP6 C 0 1 N N N -26.485 102.556 47.453 5.527 -0.333 3.703 CP6 SCA 34 SCA OP2 OP2 O 0 1 N N N -25.861 103.366 48.170 5.708 0.852 3.525 OP2 SCA 35 SCA NP2 NP2 N 0 1 N N N -26.118 101.293 47.294 4.538 -0.749 4.518 NP2 SCA 36 SCA CP5 CP5 C 0 1 N N N -24.940 100.828 48.003 3.734 0.229 5.253 CP5 SCA 37 SCA CP4 CP4 C 0 1 N N N -24.983 99.416 48.516 2.689 -0.500 6.099 CP4 SCA 38 SCA CP3 CP3 C 0 1 N N N -23.721 99.052 49.252 1.861 0.506 6.855 CP3 SCA 39 SCA OP1 OP1 O 0 1 N N N -22.831 99.890 49.534 2.085 1.691 6.729 OP1 SCA 40 SCA NP1 NP1 N 0 1 N N N -23.574 97.789 49.583 0.872 0.089 7.670 NP1 SCA 41 SCA CP2 CP2 C 0 1 N N N -22.361 97.383 50.304 0.067 1.069 8.405 CP2 SCA 42 SCA CP1 CP1 C 0 1 N N N -22.215 95.905 49.968 -0.977 0.338 9.251 CP1 SCA 43 SCA P3 P3 P 0 1 N N N -32.531 111.312 45.528 0.565 2.397 -8.653 P3 SCA 44 SCA O31 O31 O 0 1 N N N -33.222 111.064 44.228 1.704 2.564 -7.724 O31 SCA 45 SCA O32 O32 O 0 1 N N N -33.145 112.415 46.355 1.105 2.387 -10.170 O32 SCA 46 SCA O33 O33 O 0 1 N N N -32.435 110.018 46.314 -0.468 3.616 -8.460 O33 SCA 47 SCA S S S 0 1 N N N -20.953 95.106 50.923 -1.971 1.548 10.159 S SCA 48 SCA CS1 CS1 C 0 1 N N N -21.037 93.448 50.358 -3.028 0.495 10.997 CS1 SCA 49 SCA OS1 OS1 O 0 1 N N N -22.002 92.736 50.362 -2.931 -0.705 10.850 OS1 SCA 50 SCA CS2 CS2 C 0 1 N N N -19.720 92.984 49.846 -4.079 1.058 11.918 CS2 SCA 51 SCA CS3 CS3 C 0 1 N N N -19.553 91.493 49.998 -4.883 -0.086 12.537 CS3 SCA 52 SCA CS4 CS4 C 0 1 N N N -20.242 90.945 51.237 -5.934 0.476 13.458 CS4 SCA 53 SCA OS4 OS4 O 0 1 N N N -20.232 91.428 52.368 -6.763 -0.349 14.116 OS4 SCA 54 SCA OS5 OS5 O 0 1 N N N -20.871 89.899 51.058 -6.030 1.672 13.605 OS5 SCA 55 SCA H8 H8 H 0 1 N N N -26.356 111.234 42.665 -3.139 -0.422 -3.826 H8 SCA 56 SCA H2 H2 H 0 1 N N N -30.110 115.034 39.035 -6.584 -2.190 -9.059 H2 SCA 57 SCA HN61 1HN6 H 0 0 N N N -26.252 113.776 36.975 -8.876 -2.237 -5.117 HN61 SCA 58 SCA HN62 2HN6 H 0 0 N N N -26.124 112.351 37.763 -7.783 -1.748 -3.938 HN62 SCA 59 SCA "H1'" "H1'" H 0 1 N N N -29.599 113.287 43.239 -2.209 -1.223 -7.454 "H1'" SCA 60 SCA "H2'" "H2'" H 0 1 N N N -29.247 110.218 42.893 -2.609 1.523 -6.143 "H2'" SCA 61 SCA "HO2'" "'HO2" H 0 0 N N N -31.442 110.445 42.668 -3.714 0.955 -8.109 "HO2'" SCA 62 SCA "H3'" "H3'" H 0 1 N N N -30.230 109.916 45.159 -0.344 2.024 -6.537 "H3'" SCA 63 SCA "H4'" "H4'" H 0 1 N N N -28.804 111.890 46.420 0.515 -0.751 -6.802 "H4'" SCA 64 SCA "H5'1" "1H5'" H 0 0 N N N -26.764 110.680 46.304 0.148 1.055 -4.365 "H5'1" SCA 65 SCA "H5'2" "2H5'" H 0 0 N N N -28.022 109.560 46.390 1.597 0.998 -5.398 "H5'2" SCA 66 SCA HOB HOB H 0 1 N N N -27.115 106.914 42.664 0.499 0.334 -1.787 HOB SCA 67 SCA HOM HOM H 0 1 N N N -24.815 105.977 47.693 5.330 -0.298 -2.137 HOM SCA 68 SCA HPB1 1HPB H 0 0 N N N -26.073 104.918 44.303 4.315 -0.376 1.556 HPB1 SCA 69 SCA HPB2 2HPB H 0 0 N N N -25.361 104.251 45.666 5.764 -0.434 0.523 HPB2 SCA 70 SCA H7 H7 H 0 1 N N N -28.155 103.927 47.246 6.769 -2.068 3.739 H7 SCA 71 SCA H91 1H9 H 0 1 N N N -27.374 101.195 44.789 3.771 -2.234 3.042 H91 SCA 72 SCA H92 2H9 H 0 1 N N N -26.110 102.175 43.889 4.010 -3.504 1.818 H92 SCA 73 SCA H93 3H9 H 0 1 N N N -25.822 101.835 45.531 4.938 -3.546 3.336 H93 SCA 74 SCA H81 1H8 H 0 1 N N N -29.278 102.807 44.348 7.359 -2.392 0.719 H81 SCA 75 SCA H82 2H8 H 0 1 N N N -29.088 104.586 44.781 6.930 -3.754 1.782 H82 SCA 76 SCA H83 3H8 H 0 1 N N N -28.297 104.032 43.386 5.977 -3.438 0.312 H83 SCA 77 SCA HO3 HO3 H 0 1 N N N -28.947 101.821 47.607 7.160 -0.039 1.780 HO3 SCA 78 SCA HN2 HN2 H 0 1 N N N -26.696 100.724 46.675 4.359 -1.697 4.618 HN2 SCA 79 SCA H51 1H5 H 0 1 N N N -24.037 100.968 47.364 4.381 0.817 5.904 H51 SCA 80 SCA H52 2H5 H 0 1 N N N -24.706 101.525 48.841 3.232 0.890 4.547 H52 SCA 81 SCA H41 1H4 H 0 1 N N N -25.886 99.239 49.145 2.041 -1.088 5.448 H41 SCA 82 SCA H42 2H4 H 0 1 N N N -25.198 98.692 47.695 3.190 -1.162 6.805 H42 SCA 83 SCA HN1 HN1 H 0 1 N N N -24.338 97.174 49.303 0.693 -0.858 7.770 HN1 SCA 84 SCA H21 1H2 H 0 1 N N N -21.460 97.998 50.071 0.715 1.656 9.056 H21 SCA 85 SCA H22 2H2 H 0 1 N N N -22.379 97.606 51.396 -0.434 1.730 7.699 H22 SCA 86 SCA H11 1H1 H 0 1 N N N -23.190 95.373 50.070 -1.625 -0.248 8.600 H11 SCA 87 SCA H12 2H1 H 0 1 N N N -22.042 95.758 48.876 -0.475 -0.322 9.957 H12 SCA 88 SCA HOW HOW H 0 1 N N N -34.038 112.125 46.500 1.545 3.235 -10.316 HOW SCA 89 SCA HOX HOX H 0 1 N N N -33.328 109.728 46.459 -1.193 3.469 -9.082 HOX SCA 90 SCA HS21 1HS2 H 0 0 N N N -19.559 93.304 48.790 -3.598 1.633 12.710 HS21 SCA 91 SCA HS22 2HS2 H 0 0 N N N -18.879 93.537 50.326 -4.748 1.707 11.353 HS22 SCA 92 SCA HS31 1HS3 H 0 0 N N N -19.895 90.957 49.081 -5.364 -0.661 11.746 HS31 SCA 93 SCA HS32 2HS3 H 0 0 N N N -18.475 91.208 49.982 -4.214 -0.735 13.102 HS32 SCA 94 SCA HO4 HO4 H 0 1 N N N -20.662 91.085 53.142 -7.437 0.012 14.707 HO4 SCA 95 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SCA C8 N9 SING Y N 1 SCA C8 N7 DOUB Y N 2 SCA C8 H8 SING N N 3 SCA N9 C4 SING Y N 4 SCA N9 "C1'" SING N N 5 SCA C4 C5 SING Y N 6 SCA C4 N3 DOUB Y N 7 SCA C5 N7 SING Y N 8 SCA C5 C6 DOUB Y N 9 SCA N3 C2 SING Y N 10 SCA C2 N1 DOUB Y N 11 SCA C2 H2 SING N N 12 SCA N1 C6 SING Y N 13 SCA C6 N6 SING N N 14 SCA N6 HN61 SING N N 15 SCA N6 HN62 SING N N 16 SCA "C1'" "C2'" SING N N 17 SCA "C1'" "O4'" SING N N 18 SCA "C1'" "H1'" SING N N 19 SCA "C2'" "O2'" SING N N 20 SCA "C2'" "C3'" SING N N 21 SCA "C2'" "H2'" SING N N 22 SCA "O2'" "HO2'" SING N N 23 SCA "C3'" "O3'" SING N N 24 SCA "C3'" "C4'" SING N N 25 SCA "C3'" "H3'" SING N N 26 SCA "O3'" P3 SING N N 27 SCA "C4'" "O4'" SING N N 28 SCA "C4'" "C5'" SING N N 29 SCA "C4'" "H4'" SING N N 30 SCA "C5'" "O5'" SING N N 31 SCA "C5'" "H5'1" SING N N 32 SCA "C5'" "H5'2" SING N N 33 SCA "O5'" P1 SING N N 34 SCA P1 O11 SING N N 35 SCA P1 O12 DOUB N N 36 SCA P1 O6 SING N N 37 SCA O11 HOB SING N N 38 SCA O6 P2 SING N N 39 SCA P2 O21 DOUB N N 40 SCA P2 O22 SING N N 41 SCA P2 O7 SING N N 42 SCA O22 HOM SING N N 43 SCA O7 CPB SING N N 44 SCA CPB CPA SING N N 45 SCA CPB HPB1 SING N N 46 SCA CPB HPB2 SING N N 47 SCA CPA CP7 SING N N 48 SCA CPA CP9 SING N N 49 SCA CPA CP8 SING N N 50 SCA CP7 OP3 SING N N 51 SCA CP7 CP6 SING N N 52 SCA CP7 H7 SING N N 53 SCA CP9 H91 SING N N 54 SCA CP9 H92 SING N N 55 SCA CP9 H93 SING N N 56 SCA CP8 H81 SING N N 57 SCA CP8 H82 SING N N 58 SCA CP8 H83 SING N N 59 SCA OP3 HO3 SING N N 60 SCA CP6 OP2 DOUB N N 61 SCA CP6 NP2 SING N N 62 SCA NP2 CP5 SING N N 63 SCA NP2 HN2 SING N N 64 SCA CP5 CP4 SING N N 65 SCA CP5 H51 SING N N 66 SCA CP5 H52 SING N N 67 SCA CP4 CP3 SING N N 68 SCA CP4 H41 SING N N 69 SCA CP4 H42 SING N N 70 SCA CP3 OP1 DOUB N N 71 SCA CP3 NP1 SING N N 72 SCA NP1 CP2 SING N N 73 SCA NP1 HN1 SING N N 74 SCA CP2 CP1 SING N N 75 SCA CP2 H21 SING N N 76 SCA CP2 H22 SING N N 77 SCA CP1 S SING N N 78 SCA CP1 H11 SING N N 79 SCA CP1 H12 SING N N 80 SCA P3 O31 DOUB N N 81 SCA P3 O32 SING N N 82 SCA P3 O33 SING N N 83 SCA O32 HOW SING N N 84 SCA O33 HOX SING N N 85 SCA S CS1 SING N N 86 SCA CS1 OS1 DOUB N N 87 SCA CS1 CS2 SING N N 88 SCA CS2 CS3 SING N N 89 SCA CS2 HS21 SING N N 90 SCA CS2 HS22 SING N N 91 SCA CS3 CS4 SING N N 92 SCA CS3 HS31 SING N N 93 SCA CS3 HS32 SING N N 94 SCA CS4 OS4 SING N N 95 SCA CS4 OS5 DOUB N N 96 SCA OS4 HO4 SING N N 97 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SCA SMILES ACDLabs 10.04 "O=C(O)CCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O" SCA SMILES_CANONICAL CACTVS 3.341 "CC(C)(CO[P@](O)(=O)O[P@@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)CCC(O)=O" SCA SMILES CACTVS 3.341 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCSC(=O)CCC(O)=O" SCA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)(CO[P@@](=O)(O)O[P@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCSC(=O)CCC(=O)O)O" SCA SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(=O)CCC(=O)O)O" SCA InChI InChI 1.03 ;InChI=1S/C25H40N7O19P3S/c1-25(2,20(38)23(39)28-6-5-14(33)27-7-8-55-16(36)4-3-15(34)35)10-48-54(45,46)51-53(43,44)47-9-13-19(50-52(40,41)42)18(37)24(49-13)32-12-31-17-21(26)29-11-30-22(17)32/h11-13,18-20,24,37-38H,3-10H2,1-2H3,(H,27,33)(H,28,39)(H,34,35)(H,43,44)(H,45,46)(H2,26,29,30)(H2,40,41,42)/t13-,18-,19-,20+,24-/m1/s1 ; SCA InChIKey InChI 1.03 VNOYUJKHFWYWIR-ITIYDSSPSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SCA "SYSTEMATIC NAME" ACDLabs 10.04 "(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-10,14,19-trioxo-2,4,6-trioxa-18-thia-11,15-diaza-3,5-diphosphadocosan-22-oic acid 3,5-dioxide (non-preferred name)" SCA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-2-hydroxy-3,3-dimethyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-4-oxo-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SCA "Create component" 1999-07-08 RCSB SCA "Modify descriptor" 2011-06-04 RCSB #