data_SD9 # _chem_comp.id SD9 _chem_comp.name Cimetidine _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 N6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-cyano-1-methyl-3-[2-[(5-methyl-1~{H}-imidazol-4-yl)methylsulfanyl]ethyl]guanidine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-04-11 _chem_comp.pdbx_modified_date 2024-11-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 252.339 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SD9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8IZI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SD9 N1 N1 N 0 1 Y N N N N N 1.872 -8.886 15.207 -4.227 -0.090 -1.390 N1 SD9 1 SD9 N3 N2 N 0 1 N N N N N N 2.432 -14.025 17.151 3.068 0.609 -0.178 N3 SD9 2 SD9 C4 C1 C 0 1 Y N N N N N 0.897 -8.244 14.591 -5.368 -0.557 -0.961 C4 SD9 3 SD9 C5 C2 C 0 1 N N N N N N 3.732 -10.443 14.536 -2.189 1.082 -0.432 C5 SD9 4 SD9 C6 C3 C 0 1 N N N N N N 2.746 -11.587 16.940 0.630 0.775 -0.286 C6 SD9 5 SD9 C7 C4 C 0 1 N N N N N N 1.958 -12.718 17.577 1.824 -0.159 -0.080 C7 SD9 6 SD9 C8 C5 C 0 1 N N N N N N 1.677 -15.002 16.653 4.263 0.015 0.113 C8 SD9 7 SD9 C10 C6 C 0 1 N N N N N N 2.410 -15.829 18.549 3.205 -2.046 0.206 C10 SD9 8 SD9 C1 C7 C 0 1 N N N N N N 2.235 -9.843 11.622 -3.936 0.738 2.143 C1 SD9 9 SD9 C2 C8 C 0 1 Y N N N N N 1.946 -9.355 13.003 -4.298 0.293 0.750 C2 SD9 10 SD9 C3 C9 C 0 1 Y N N N N N 2.537 -9.602 14.222 -3.549 0.438 -0.360 C3 SD9 11 SD9 N2 N3 N 0 1 Y N N N N N 0.902 -8.497 13.263 -5.452 -0.339 0.369 N2 SD9 12 SD9 S1 S1 S 0 1 N N N N N N 3.385 -12.059 15.315 -0.910 -0.176 -0.165 S1 SD9 13 SD9 N4 N4 N 0 1 N N N N N N 0.859 -14.912 15.642 5.408 0.759 0.138 N4 SD9 14 SD9 C9 C10 C 0 1 N N N N N N 1.408 -14.661 14.317 5.373 2.170 -0.256 C9 SD9 15 SD9 N5 N5 N 0 1 N N N N N N 1.830 -16.102 17.343 4.311 -1.281 0.371 N5 SD9 16 SD9 N6 N6 N 0 1 N N N N N N 3.050 -15.383 19.390 2.278 -2.688 0.068 N6 SD9 17 SD9 H2 H2 H 0 1 N N N N N N 3.411 -14.206 17.240 3.043 1.540 -0.450 H2 SD9 18 SD9 H3 H3 H 0 1 N N N N N N 0.186 -7.599 15.085 -6.120 -1.038 -1.569 H3 SD9 19 SD9 H4 H4 H 0 1 N N N N N N 4.269 -10.631 13.595 -2.053 1.535 -1.414 H4 SD9 20 SD9 H5 H5 H 0 1 N N N N N N 4.377 -9.871 15.219 -2.109 1.850 0.337 H5 SD9 21 SD9 H6 H6 H 0 1 N N N N N N 3.591 -11.327 17.595 0.639 1.551 0.479 H6 SD9 22 SD9 H7 H7 H 0 1 N N N N N N 2.088 -10.713 16.825 0.696 1.236 -1.272 H7 SD9 23 SD9 H8 H8 H 0 1 N N N N N N 2.054 -12.645 18.670 1.815 -0.935 -0.845 H8 SD9 24 SD9 H9 H9 H 0 1 N N N N N N 0.900 -12.616 17.295 1.759 -0.620 0.905 H9 SD9 25 SD9 H10 H10 H 0 1 N N N N N N 2.939 -9.156 11.130 -3.408 -0.066 2.656 H10 SD9 26 SD9 H11 H11 H 0 1 N N N N N N 2.679 -10.848 11.674 -3.293 1.617 2.088 H11 SD9 27 SD9 H12 H12 H 0 1 N N N N N N 1.300 -9.885 11.045 -4.844 0.986 2.693 H12 SD9 28 SD9 H13 H13 H 0 1 N N N N N N 0.262 -8.127 12.590 -6.192 -0.583 0.947 H13 SD9 29 SD9 H14 H14 H 0 1 N N N N N N 0.590 -14.614 13.583 4.946 2.257 -1.255 H14 SD9 30 SD9 H15 H15 H 0 1 N N N N N N 1.952 -13.705 14.321 4.761 2.730 0.452 H15 SD9 31 SD9 H16 H16 H 0 1 N N N N N N 2.097 -15.474 14.046 6.386 2.572 -0.257 H16 SD9 32 SD9 H1 H1 H 0 1 N N N N N N -0.127 -15.013 15.774 6.244 0.354 0.417 H1 SD9 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SD9 C1 C2 SING N N 1 SD9 C2 N2 SING Y N 2 SD9 C2 C3 DOUB Y N 3 SD9 N2 C4 SING Y N 4 SD9 C3 C5 SING N N 5 SD9 C3 N1 SING Y N 6 SD9 C9 N4 SING N N 7 SD9 C5 S1 SING N N 8 SD9 C4 N1 DOUB Y N 9 SD9 S1 C6 SING N N 10 SD9 N4 C8 SING N N 11 SD9 C8 N3 SING N N 12 SD9 C8 N5 DOUB N N 13 SD9 C6 C7 SING N N 14 SD9 N3 C7 SING N N 15 SD9 N5 C10 SING N N 16 SD9 C10 N6 TRIP N N 17 SD9 N3 H2 SING N N 18 SD9 C4 H3 SING N N 19 SD9 C5 H4 SING N N 20 SD9 C5 H5 SING N N 21 SD9 C6 H6 SING N N 22 SD9 C6 H7 SING N N 23 SD9 C7 H8 SING N N 24 SD9 C7 H9 SING N N 25 SD9 C1 H10 SING N N 26 SD9 C1 H11 SING N N 27 SD9 C1 H12 SING N N 28 SD9 N2 H13 SING N N 29 SD9 C9 H14 SING N N 30 SD9 C9 H15 SING N N 31 SD9 C9 H16 SING N N 32 SD9 N4 H1 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SD9 InChI InChI 1.06 "InChI=1S/C10H16N6S/c1-8-9(16-7-15-8)5-17-4-3-13-10(12-2)14-6-11/h7H,3-5H2,1-2H3,(H,15,16)(H2,12,13,14)" SD9 InChIKey InChI 1.06 AQIXAKUUQRKLND-UHFFFAOYSA-N SD9 SMILES_CANONICAL CACTVS 3.385 "CNC(NCCSCc1nc[nH]c1C)=NC#N" SD9 SMILES CACTVS 3.385 "CNC(NCCSCc1nc[nH]c1C)=NC#N" SD9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(nc[nH]1)CSCCN/C(=N\C#N)/NC" SD9 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(nc[nH]1)CSCCNC(=NC#N)NC" # _pdbx_chem_comp_identifier.comp_id SD9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-cyano-1-methyl-3-[2-[(5-methyl-1~{H}-imidazol-4-yl)methylsulfanyl]ethyl]guanidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SD9 "Create component" 2023-04-11 PDBJ SD9 "Initial release" 2024-09-18 RCSB SD9 "Modify name" 2024-11-11 PDBJ # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id SD9 _pdbx_chem_comp_synonyms.name "2-cyano-1-methyl-3-[2-[(5-methyl-1~{H}-imidazol-4-yl)methylsulfanyl]ethyl]guanidine" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #