data_SDB # _chem_comp.id SDB _chem_comp.name "(4S)-2-[(1S)-1-amino-2-hydroxyethyl]-3,4,5,6-tetrahydropyrimidine-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H13 N3 O3" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-12-20 _chem_comp.pdbx_modified_date 2020-02-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 187.196 _chem_comp.one_letter_code S _chem_comp.three_letter_code SDB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2W76 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SDB O O O 0 1 N N N -66.901 -41.099 18.876 -2.483 -1.686 -0.585 O SDB 1 SDB C C C 0 1 N N N -66.745 -40.816 17.684 -2.633 -0.777 0.196 C SDB 2 SDB CA1 CA1 C 0 1 N N S -66.941 -39.290 17.375 -1.515 0.206 0.432 CA1 SDB 3 SDB CB1 CB1 C 0 1 N N N -66.056 -38.300 18.133 -1.769 1.490 -0.372 CB1 SDB 4 SDB CG CG C 0 1 N N N -66.428 -36.886 17.689 -0.598 2.446 -0.137 CG SDB 5 SDB NE NE N 0 1 N N N -67.828 -36.767 18.086 0.673 1.757 -0.327 NE SDB 6 SDB N1 N1 N 0 1 N N N -68.338 -38.819 17.370 -0.242 -0.362 -0.041 N1 SDB 7 SDB C1 C1 C 0 1 N N N -68.681 -37.706 18.055 0.810 0.483 -0.274 C1 SDB 8 SDB CA CA C 0 1 N N S -70.057 -37.631 18.744 2.182 -0.106 -0.475 CA SDB 9 SDB N N N 0 1 N N N -70.575 -36.452 19.498 2.056 -1.486 -0.964 N SDB 10 SDB CB CB C 0 1 N N N -70.162 -38.742 19.787 2.938 -0.105 0.855 CB SDB 11 SDB OG OG O 0 1 N N N -71.525 -39.233 19.696 4.278 -0.555 0.642 OG SDB 12 SDB OXT OXT O 0 1 N Y N -66.000 -41.821 17.326 -3.797 -0.638 0.850 OXT SDB 13 SDB HA1 HA1 H 0 1 N N N -66.574 -39.282 16.338 -1.445 0.441 1.494 HA1 SDB 14 SDB HOT HOT H 0 1 N N N -65.849 -42.387 18.074 -4.485 -1.291 0.664 HOT SDB 15 SDB HB11 HB11 H 0 0 N N N -66.218 -38.407 19.216 -1.841 1.251 -1.433 HB11 SDB 16 SDB HB12 HB12 H 0 0 N N N -64.996 -38.498 17.917 -2.696 1.955 -0.037 HB12 SDB 17 SDB H1 H1 H 0 1 N N N -69.033 -39.324 16.859 -0.150 -1.317 -0.184 H1 SDB 18 SDB HG1C HG1C H 0 0 N N N -65.801 -36.129 18.183 -0.665 3.277 -0.840 HG1C SDB 19 SDB HG2C HG2C H 0 0 N N N -66.273 -36.721 16.613 -0.648 2.833 0.881 HG2C SDB 20 SDB HA HA H 0 1 N N N -70.653 -37.649 17.819 2.730 0.489 -1.205 HA SDB 21 SDB HN1 HN1 H 0 1 N N N -70.691 -36.696 20.461 1.551 -2.058 -0.305 HN1 SDB 22 SDB HN2 HN2 H 0 1 N N N -69.925 -35.696 19.422 1.617 -1.508 -1.873 HN2 SDB 23 SDB HB1C HB1C H 0 0 N N N -69.442 -39.546 19.575 2.955 0.907 1.262 HB1C SDB 24 SDB HB2C HB2C H 0 0 N N N -69.930 -38.374 20.797 2.438 -0.771 1.558 HB2C SDB 25 SDB HG HG H 0 1 N N N -71.882 -39.340 20.570 4.817 -0.579 1.445 HG SDB 26 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SDB O C DOUB N N 1 SDB C CA1 SING N N 2 SDB C OXT SING N N 3 SDB CA1 CB1 SING N N 4 SDB CA1 N1 SING N N 5 SDB CB1 CG SING N N 6 SDB CG NE SING N N 7 SDB NE C1 DOUB N N 8 SDB N1 C1 SING N N 9 SDB C1 CA SING N N 10 SDB CA N SING N N 11 SDB CA CB SING N N 12 SDB CB OG SING N N 13 SDB CA1 HA1 SING N N 14 SDB OXT HOT SING N N 15 SDB CB1 HB11 SING N N 16 SDB CB1 HB12 SING N N 17 SDB N1 H1 SING N N 18 SDB CG HG1C SING N N 19 SDB CG HG2C SING N N 20 SDB CA HA SING N N 21 SDB N HN1 SING N N 22 SDB N HN2 SING N N 23 SDB CB HB1C SING N N 24 SDB CB HB2C SING N N 25 SDB OG HG SING N N 26 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SDB SMILES ACDLabs 10.04 "O=C(O)C1NC(=NCC1)C(N)CO" SDB SMILES_CANONICAL CACTVS 3.352 "N[C@H](CO)C1=NCC[C@H](N1)C(O)=O" SDB SMILES CACTVS 3.352 "N[CH](CO)C1=NCC[CH](N1)C(O)=O" SDB SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C1CN=C(N[C@@H]1C(=O)O)[C@@H](CO)N" SDB SMILES "OpenEye OEToolkits" 1.6.1 "C1CN=C(NC1C(=O)O)C(CO)N" SDB InChI InChI 1.03 "InChI=1S/C7H13N3O3/c8-4(3-11)6-9-2-1-5(10-6)7(12)13/h4-5,11H,1-3,8H2,(H,9,10)(H,12,13)/t4-,5+/m1/s1" SDB InChIKey InChI 1.03 VUUJBNDKGSHBPM-UHNVWZDZSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SDB "SYSTEMATIC NAME" ACDLabs 10.04 "(4S)-2-[(1S)-1-amino-2-hydroxyethyl]-3,4,5,6-tetrahydropyrimidine-4-carboxylic acid" SDB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(4S)-2-[(1S)-1-amino-2-hydroxy-ethyl]-3,4,5,6-tetrahydropyrimidine-4-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SDB "Create component" 2008-12-20 EBI SDB "Modify descriptor" 2011-06-04 RCSB SDB "Modify one letter code" 2020-02-14 PDBE ##