data_SE6 # _chem_comp.id SE6 _chem_comp.name "[(2E)-3-(hydroxymethyl)hexa-2,5-dienyl] phosphono hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H14 O8 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-04-11 _chem_comp.pdbx_modified_date 2023-09-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 288.129 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SE6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8IZG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SE6 OAM O1 O 0 1 N N N 19.982 20.701 -2.456 4.406 -0.115 -0.694 OAM SE6 1 SE6 PAK P1 P 0 1 N N N 21.274 20.664 -1.577 3.671 -0.025 0.588 PAK SE6 2 SE6 OAN O2 O 0 1 N N N 22.091 19.363 -1.885 3.631 -1.476 1.286 OAN SE6 3 SE6 OAL O3 O 0 1 N N N 20.962 20.841 -0.112 4.414 1.019 1.561 OAL SE6 4 SE6 OAJ O4 O 0 1 N N N 22.168 21.884 -2.153 2.166 0.477 0.310 OAJ SE6 5 SE6 PAG P2 P 0 1 N N N 22.888 23.123 -1.435 1.039 0.087 -0.772 PAG SE6 6 SE6 OAI O5 O 0 1 N N N 23.809 22.653 -0.290 1.420 0.727 -2.199 OAI SE6 7 SE6 OAH O6 O 0 1 N N N 23.569 23.796 -2.618 0.963 -1.386 -0.895 OAH SE6 8 SE6 OAF O7 O 0 1 N N N 21.752 24.073 -0.745 -0.387 0.660 -0.290 OAF SE6 9 SE6 CAE C1 C 0 1 N N N 20.777 24.680 -1.671 -1.607 0.390 -0.983 CAE SE6 10 SE6 CAC C2 C 0 1 N N N 19.818 25.350 -0.769 -2.749 1.072 -0.273 CAC SE6 11 SE6 CAB C3 C 0 1 N N N 19.428 26.795 -0.904 -3.869 0.426 -0.062 CAB SE6 12 SE6 CAA C4 C 0 1 N N N 18.422 27.401 0.059 -4.962 1.061 0.757 CAA SE6 13 SE6 OAP O8 O 0 1 N N N 17.864 26.433 0.921 -4.543 2.357 1.189 OAP SE6 14 SE6 CAD C5 C 0 1 N N N 19.909 27.686 -1.957 -4.063 -0.952 -0.639 CAD SE6 15 SE6 CAO C6 C 0 1 N N N 20.824 28.679 -1.275 -3.670 -1.986 0.384 CAO SE6 16 SE6 CAQ C7 C 0 1 N N N 20.370 30.011 -0.866 -4.519 -2.921 0.732 CAQ SE6 17 SE6 H1 H1 H 0 1 N N N 21.638 18.853 -2.547 3.164 -1.492 2.132 H1 SE6 18 SE6 H2 H2 H 0 1 N N N 20.024 20.943 0.002 5.327 0.779 1.772 H2 SE6 19 SE6 H3 H3 H 0 1 N N N 24.711 22.863 -0.502 1.487 1.691 -2.193 H3 SE6 20 SE6 H4 H4 H 0 1 N N N 20.276 23.910 -2.276 -1.537 0.768 -2.003 H4 SE6 21 SE6 H5 H5 H 0 1 N N N 21.266 25.407 -2.336 -1.783 -0.685 -1.004 H5 SE6 22 SE6 H6 H6 H 0 1 N N N 19.375 24.772 0.028 -2.643 2.093 0.062 H6 SE6 23 SE6 H7 H7 H 0 1 N N N 18.928 28.167 0.665 -5.863 1.154 0.151 H7 SE6 24 SE6 H8 H8 H 0 1 N N N 17.613 27.868 -0.521 -5.173 0.439 1.627 H8 SE6 25 SE6 H9 H9 H 0 1 N N N 17.242 26.850 1.506 -5.199 2.826 1.723 H9 SE6 26 SE6 H10 H10 H 0 1 N N N 19.065 28.207 -2.432 -5.110 -1.089 -0.909 H10 SE6 27 SE6 H11 H11 H 0 1 N N N 20.462 27.116 -2.717 -3.441 -1.066 -1.528 H11 SE6 28 SE6 H12 H12 H 0 1 N N N 21.848 28.396 -1.083 -2.687 -1.956 0.832 H12 SE6 29 SE6 H14 H14 H 0 1 N N N 21.056 30.690 -0.381 -5.501 -2.951 0.284 H14 SE6 30 SE6 H15 H15 H 0 1 N N N 19.350 30.314 -1.049 -4.237 -3.661 1.465 H15 SE6 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SE6 OAH PAG DOUB N N 1 SE6 OAM PAK DOUB N N 2 SE6 OAJ PAK SING N N 3 SE6 OAJ PAG SING N N 4 SE6 CAD CAO SING N N 5 SE6 CAD CAB SING N N 6 SE6 OAN PAK SING N N 7 SE6 CAE CAC SING N N 8 SE6 CAE OAF SING N N 9 SE6 PAK OAL SING N N 10 SE6 PAG OAF SING N N 11 SE6 PAG OAI SING N N 12 SE6 CAO CAQ DOUB N N 13 SE6 CAB CAC DOUB N E 14 SE6 CAB CAA SING N N 15 SE6 CAA OAP SING N N 16 SE6 OAN H1 SING N N 17 SE6 OAL H2 SING N N 18 SE6 OAI H3 SING N N 19 SE6 CAE H4 SING N N 20 SE6 CAE H5 SING N N 21 SE6 CAC H6 SING N N 22 SE6 CAA H7 SING N N 23 SE6 CAA H8 SING N N 24 SE6 OAP H9 SING N N 25 SE6 CAD H10 SING N N 26 SE6 CAD H11 SING N N 27 SE6 CAO H12 SING N N 28 SE6 CAQ H14 SING N N 29 SE6 CAQ H15 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SE6 InChI InChI 1.06 "InChI=1S/C7H14O8P2/c1-2-3-7(6-8)4-5-14-17(12,13)15-16(9,10)11/h2,4,8H,1,3,5-6H2,(H,12,13)(H2,9,10,11)/b7-4+" SE6 InChIKey InChI 1.06 RHMQIVMXZYACOO-QPJJXVBHSA-N SE6 SMILES_CANONICAL CACTVS 3.385 "OC\C(CC=C)=C\CO[P](O)(=O)O[P](O)(O)=O" SE6 SMILES CACTVS 3.385 "OCC(CC=C)=CCO[P](O)(=O)O[P](O)(O)=O" SE6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C=CC/C(=C\COP(=O)(O)OP(=O)(O)O)/CO" SE6 SMILES "OpenEye OEToolkits" 2.0.7 "C=CCC(=CCOP(=O)(O)OP(=O)(O)O)CO" # _pdbx_chem_comp_identifier.comp_id SE6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{E})-3-(hydroxymethyl)hexa-2,5-dienyl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SE6 "Create component" 2023-04-11 PDBJ SE6 "Initial release" 2023-09-13 RCSB #