data_SE9 # _chem_comp.id SE9 _chem_comp.name "(2P)-5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-[3-(trifluoromethyl)phenyl]-1,6-dihydropyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H17 F3 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-30 _chem_comp.pdbx_modified_date 2022-09-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 434.369 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SE9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8DIP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SE9 C11 C1 C 0 1 N N N 4.656 30.403 16.754 -1.020 -2.375 0.036 C11 SE9 1 SE9 C12 C2 C 0 1 N N N 4.882 29.405 17.839 -1.635 -3.617 -0.033 C12 SE9 2 SE9 C01 C3 C 0 1 N N N 5.725 31.698 9.862 8.778 0.904 -1.423 C01 SE9 3 SE9 C03 C4 C 0 1 Y N N 4.328 32.980 11.249 6.584 0.756 -0.524 C03 SE9 4 SE9 C04 C5 C 0 1 Y N N 3.284 32.879 12.157 5.204 0.666 -0.662 C04 SE9 5 SE9 C05 C6 C 0 1 Y N N 3.178 33.776 13.206 4.418 0.595 0.475 C05 SE9 6 SE9 C06 C7 C 0 1 N N N 2.035 33.678 14.216 2.918 0.497 0.369 C06 SE9 7 SE9 C07 C8 C 0 1 N N N 1.877 32.246 14.731 2.506 -0.975 0.309 C07 SE9 8 SE9 C09 C9 C 0 1 N N N 3.259 30.734 16.239 0.454 -2.279 0.140 C09 SE9 9 SE9 C14 C10 C 0 1 N N N 6.274 29.127 18.302 -3.098 -3.655 -0.135 C14 SE9 10 SE9 C17 C11 C 0 1 N N N 7.164 30.809 16.622 -3.075 -1.303 -0.084 C17 SE9 11 SE9 C19 C12 C 0 1 Y N N 8.332 31.551 15.983 -3.829 -0.032 -0.110 C19 SE9 12 SE9 C20 C13 C 0 1 Y N N 9.404 30.854 15.447 -5.221 -0.045 -0.208 C20 SE9 13 SE9 C21 C14 C 0 1 Y N N 10.453 31.548 14.869 -5.918 1.145 -0.231 C21 SE9 14 SE9 C22 C15 C 0 1 Y N N 10.428 32.934 14.823 -5.241 2.349 -0.158 C22 SE9 15 SE9 C23 C16 C 0 1 Y N N 9.353 33.626 15.357 -3.861 2.369 -0.062 C23 SE9 16 SE9 C24 C17 C 0 1 Y N N 8.305 32.933 15.936 -3.151 1.186 -0.032 C24 SE9 17 SE9 C25 C18 C 0 1 N N N 9.310 35.152 15.314 -3.131 3.685 0.017 C25 SE9 18 SE9 C29 C19 C 0 1 Y N N 4.156 34.759 13.299 5.042 0.616 1.714 C29 SE9 19 SE9 C30 C20 C 0 1 Y N N 5.176 34.808 12.360 6.418 0.706 1.776 C30 SE9 20 SE9 F26 F1 F 0 1 N N N 10.559 35.641 15.055 -2.251 3.796 -1.065 F26 SE9 21 SE9 F27 F2 F 0 1 N N N 8.876 35.623 16.520 -4.056 4.734 -0.025 F27 SE9 22 SE9 F28 F3 F 0 1 N N N 8.447 35.554 14.335 -2.409 3.747 1.214 F28 SE9 23 SE9 N08 N1 N 0 1 N N N 3.143 31.826 15.294 1.047 -1.070 0.206 N08 SE9 24 SE9 N16 N2 N 0 1 N N N 7.400 29.821 17.704 -3.764 -2.479 -0.157 N16 SE9 25 SE9 N18 N3 N 0 1 N N N 5.784 31.093 16.161 -1.768 -1.262 0.001 N18 SE9 26 SE9 N31 N4 N 0 1 Y N N 5.239 33.932 11.372 7.142 0.773 0.675 N31 SE9 27 SE9 O02 O1 O 0 1 N N N 4.416 32.065 10.194 7.366 0.820 -1.631 O02 SE9 28 SE9 O10 O2 O 0 1 N N N 2.306 30.122 16.590 1.129 -3.289 0.165 O10 SE9 29 SE9 O13 O3 O 0 1 N N N 3.798 28.735 18.418 -0.906 -4.761 -0.007 O13 SE9 30 SE9 O15 O4 O 0 1 N N N 6.473 28.337 19.159 -3.695 -4.715 -0.199 O15 SE9 31 SE9 H1 H1 H 0 1 N N N 5.705 30.981 9.028 9.007 1.802 -0.849 H1 SE9 32 SE9 H2 H2 H 0 1 N N N 6.292 32.592 9.563 9.117 0.026 -0.875 H2 SE9 33 SE9 H3 H3 H 0 1 N N N 6.208 31.233 10.734 9.285 0.950 -2.387 H3 SE9 34 SE9 H4 H4 H 0 1 N N N 2.549 32.095 12.045 4.752 0.653 -1.642 H4 SE9 35 SE9 H5 H5 H 0 1 N N N 2.248 34.344 15.065 2.460 0.968 1.239 H5 SE9 36 SE9 H6 H6 H 0 1 N N N 1.099 33.991 13.731 2.583 1.005 -0.536 H6 SE9 37 SE9 H7 H7 H 0 1 N N N 1.096 32.213 15.505 2.963 -1.445 -0.561 H7 SE9 38 SE9 H8 H8 H 0 1 N N N 1.599 31.580 13.901 2.840 -1.483 1.214 H8 SE9 39 SE9 H9 H9 H 0 1 N N N 9.421 29.775 15.480 -5.751 -0.984 -0.265 H9 SE9 40 SE9 H10 H10 H 0 1 N N N 11.292 31.010 14.453 -6.996 1.137 -0.306 H10 SE9 41 SE9 H11 H11 H 0 1 N N N 11.247 33.474 14.371 -5.792 3.278 -0.177 H11 SE9 42 SE9 H12 H12 H 0 1 N N N 7.466 33.471 16.351 -2.074 1.203 0.043 H12 SE9 43 SE9 H13 H13 H 0 1 N N N 4.122 35.483 14.100 4.457 0.563 2.621 H13 SE9 44 SE9 H14 H14 H 0 1 N N N 5.932 35.575 12.438 6.909 0.723 2.738 H14 SE9 45 SE9 H15 H15 H 0 1 N N N 3.973 32.311 15.019 0.509 -0.264 0.186 H15 SE9 46 SE9 H16 H16 H 0 1 N N N 8.330 29.634 18.020 -4.732 -2.471 -0.219 H16 SE9 47 SE9 H17 H17 H 0 1 N N N 2.995 28.998 17.984 -1.437 -5.567 -0.061 H17 SE9 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SE9 C01 O02 SING N N 1 SE9 O02 C03 SING N N 2 SE9 C03 N31 DOUB Y N 3 SE9 C03 C04 SING Y N 4 SE9 N31 C30 SING Y N 5 SE9 C04 C05 DOUB Y N 6 SE9 C30 C29 DOUB Y N 7 SE9 C05 C29 SING Y N 8 SE9 C05 C06 SING N N 9 SE9 C06 C07 SING N N 10 SE9 F28 C25 SING N N 11 SE9 C07 N08 SING N N 12 SE9 C22 C21 DOUB Y N 13 SE9 C22 C23 SING Y N 14 SE9 C21 C20 SING Y N 15 SE9 F26 C25 SING N N 16 SE9 N08 C09 SING N N 17 SE9 C25 C23 SING N N 18 SE9 C25 F27 SING N N 19 SE9 C23 C24 DOUB Y N 20 SE9 C20 C19 DOUB Y N 21 SE9 C24 C19 SING Y N 22 SE9 C19 C17 SING N N 23 SE9 N18 C17 DOUB N N 24 SE9 N18 C11 SING N N 25 SE9 C09 O10 DOUB N N 26 SE9 C09 C11 SING N N 27 SE9 C17 N16 SING N N 28 SE9 C11 C12 DOUB N N 29 SE9 N16 C14 SING N N 30 SE9 C12 C14 SING N N 31 SE9 C12 O13 SING N N 32 SE9 C14 O15 DOUB N N 33 SE9 C01 H1 SING N N 34 SE9 C01 H2 SING N N 35 SE9 C01 H3 SING N N 36 SE9 C04 H4 SING N N 37 SE9 C06 H5 SING N N 38 SE9 C06 H6 SING N N 39 SE9 C07 H7 SING N N 40 SE9 C07 H8 SING N N 41 SE9 C20 H9 SING N N 42 SE9 C21 H10 SING N N 43 SE9 C22 H11 SING N N 44 SE9 C24 H12 SING N N 45 SE9 C29 H13 SING N N 46 SE9 C30 H14 SING N N 47 SE9 N08 H15 SING N N 48 SE9 N16 H16 SING N N 49 SE9 O13 H17 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SE9 SMILES ACDLabs 12.01 "OC1=C(N=C(NC1=O)c1cccc(c1)C(F)(F)F)C(=O)NCCc1ccnc(OC)c1" SE9 InChI InChI 1.06 "InChI=1S/C20H17F3N4O4/c1-31-14-9-11(5-7-24-14)6-8-25-18(29)15-16(28)19(30)27-17(26-15)12-3-2-4-13(10-12)20(21,22)23/h2-5,7,9-10,28H,6,8H2,1H3,(H,25,29)(H,26,27,30)" SE9 InChIKey InChI 1.06 CJUKCSPPUSTPJP-UHFFFAOYSA-N SE9 SMILES_CANONICAL CACTVS 3.385 "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3cccc(c3)C(F)(F)F)ccn1" SE9 SMILES CACTVS 3.385 "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3cccc(c3)C(F)(F)F)ccn1" SE9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc(ccn1)CCNC(=O)C2=C(C(=O)NC(=N2)c3cccc(c3)C(F)(F)F)O" SE9 SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc(ccn1)CCNC(=O)C2=C(C(=O)NC(=N2)c3cccc(c3)C(F)(F)F)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SE9 "SYSTEMATIC NAME" ACDLabs 12.01 "(2P)-5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-[3-(trifluoromethyl)phenyl]-1,6-dihydropyrimidine-4-carboxamide" SE9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[2-(2-methoxypyridin-4-yl)ethyl]-5-oxidanyl-6-oxidanylidene-2-[3-(trifluoromethyl)phenyl]-1~{H}-pyrimidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SE9 "Create component" 2022-06-30 RCSB SE9 "Initial release" 2022-09-14 RCSB #