data_SEF # _chem_comp.id SEF _chem_comp.name "ethyl (R)-{10-[(hept-6-yn-1-ylcarbamoyl)oxy]decyl}phosphonofluoridate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H37 F N O4 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-03-22 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 405.484 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SEF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4JLL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SEF F F F 0 1 N Y N N N N -9.338 16.278 -7.427 -9.385 1.226 1.263 F SEF 1 SEF C1 C1 C 0 1 N N N N N N -8.709 15.933 -10.131 -7.798 -0.788 0.011 C1 SEF 2 SEF O1 O1 O 0 1 N N N N N N -6.940 16.725 -8.163 -9.374 0.976 -1.299 O1 SEF 3 SEF P1 P1 P 0 1 N N R N N N -8.323 16.839 -8.693 -9.335 0.190 -0.046 P1 SEF 4 SEF C2 C2 C 0 1 N N N N N N -10.047 16.316 -10.788 -6.593 0.153 -0.038 C2 SEF 5 SEF O2 O2 O 0 1 N N N N N N -8.683 18.446 -8.829 -10.604 -0.801 0.006 O2 SEF 6 SEF C3 C3 C 0 1 N N N N N N -10.637 15.340 -11.838 -5.302 -0.667 0.009 C3 SEF 7 SEF C4 C4 C 0 1 N N N N N N -12.020 15.723 -12.407 -4.097 0.274 -0.040 C4 SEF 8 SEF C5 C5 C 0 1 N N N N N N -12.799 14.567 -13.067 -2.807 -0.547 0.008 C5 SEF 9 SEF C6 C6 C 0 1 N N N N N N -13.844 15.009 -14.109 -1.602 0.395 -0.041 C6 SEF 10 SEF C7 C7 C 0 1 N N N N N N -14.526 13.864 -14.876 -0.311 -0.426 0.007 C7 SEF 11 SEF C8 C8 C 0 1 N N N N N N -14.919 12.647 -14.011 0.894 0.516 -0.043 C8 SEF 12 SEF C9 C9 C 0 1 N N N N N N -16.150 11.844 -14.507 2.184 -0.305 0.005 C9 SEF 13 SEF C01 C01 C 0 1 N N N N N N -7.737 19.378 -9.377 -11.955 -0.337 -0.022 C01 SEF 14 SEF N01 N01 N 0 1 N N N N N N -15.007 8.522 -11.163 6.947 -0.122 0.005 N01 SEF 15 SEF O01 O01 O 0 1 N N N N N N -15.674 10.332 -12.579 4.614 -0.142 0.001 O01 SEF 16 SEF C02 C02 C 0 1 N N N N N N -8.346 20.534 -10.208 -12.906 -1.534 0.041 C02 SEF 17 SEF O02 O02 O 0 1 N N N N N N -17.076 8.729 -12.096 5.764 1.753 -0.101 O02 SEF 18 SEF C10 C10 C 0 1 N N N N N N -16.677 10.827 -13.469 3.390 0.636 -0.044 C10 SEF 19 SEF C12 C12 C 0 1 N N N N N N -15.976 9.220 -11.892 5.774 0.540 -0.034 C12 SEF 20 SEF C14 C14 C 0 1 N N N N N N -15.479 7.285 -10.503 8.210 0.620 -0.034 C14 SEF 21 SEF C15 C15 C 0 1 N N N N N N -16.378 7.440 -9.279 9.381 -0.362 0.023 C15 SEF 22 SEF C16 C16 C 0 1 N N N N N N -15.712 8.272 -8.190 10.699 0.414 -0.017 C16 SEF 23 SEF C17 C17 C 0 1 N N N N N N -14.592 7.558 -7.449 11.871 -0.569 0.039 C17 SEF 24 SEF C18 C18 C 0 1 N N N N N N -14.519 7.868 -5.995 13.189 0.207 -0.001 C18 SEF 25 SEF C19 C19 C 0 1 N N N N N N -13.808 9.084 -5.783 14.316 -0.738 0.054 C19 SEF 26 SEF C20 C20 C 0 1 N N N N N N -13.289 9.451 -4.645 15.215 -1.492 0.097 C20 SEF 27 SEF H1 H1 H 0 1 N N N N N N -7.907 16.096 -10.865 -7.769 -1.367 0.934 H1 SEF 28 SEF H1A H1A H 0 1 N N N N N N -8.750 14.867 -9.864 -7.766 -1.464 -0.843 H1A SEF 29 SEF H2 H2 H 0 1 N N N N N N -10.790 16.422 -9.984 -6.621 0.732 -0.961 H2 SEF 30 SEF H41 H41 H 0 1 N N N N N N -9.903 17.287 -11.285 -6.625 0.830 0.816 H41 SEF 31 SEF H3 H3 H 0 1 N N N N N N -9.930 15.281 -12.679 -5.274 -1.246 0.933 H3 SEF 32 SEF H61 H61 H 0 1 N N N N N N -10.728 14.351 -11.366 -5.270 -1.344 -0.845 H61 SEF 33 SEF H4 H4 H 0 1 N N N N N N -12.631 16.118 -11.582 -4.126 0.853 -0.963 H4 SEF 34 SEF H4A H4A H 0 1 N N N N N N -11.872 16.509 -13.162 -4.129 0.951 0.814 H4A SEF 35 SEF H5 H5 H 0 1 N N N N N N -12.075 13.907 -13.566 -2.778 -1.125 0.931 H5 SEF 36 SEF H5A H5A H 0 1 N N N N N N -13.319 14.008 -12.275 -2.774 -1.223 -0.846 H5A SEF 37 SEF H6 H6 H 0 1 N N N N N N -14.625 15.582 -13.587 -1.630 0.974 -0.964 H6 SEF 38 SEF H6A H6A H 0 1 N N N N N N -13.341 15.658 -14.841 -1.634 1.071 0.813 H6A SEF 39 SEF H7 H7 H 0 1 N N N N N N -15.440 14.261 -15.342 -0.282 -1.005 0.930 H7 SEF 40 SEF H7A H7A H 0 1 N N N N N N -13.835 13.518 -15.659 -0.279 -1.102 -0.848 H7A SEF 41 SEF H8 H8 H 0 1 N N N N N N -14.059 11.962 -13.979 0.865 1.094 -0.966 H8 SEF 42 SEF H8A H8A H 0 1 N N N N N N -15.138 13.009 -12.996 0.862 1.192 0.811 H8A SEF 43 SEF H9 H9 H 0 1 N N N N N N -16.958 12.553 -14.742 2.213 -0.884 0.928 H9 SEF 44 SEF H9A H9A H 0 1 N N N N N N -15.866 11.297 -15.418 2.217 -0.981 -0.849 H9A SEF 45 SEF H01 H01 H 0 1 N N N N N N -7.174 19.821 -8.542 -12.133 0.315 0.833 H01 SEF 46 SEF H201 H201 H 0 0 N N N N N N -7.048 18.819 -10.028 -12.130 0.217 -0.944 H201 SEF 47 SEF HN01 HN01 H 0 0 N N N N N N -14.061 8.838 -11.093 6.956 -1.091 0.058 HN01 SEF 48 SEF H02 H02 H 0 1 N N N N N N -7.540 21.184 -10.578 -13.937 -1.180 0.020 H02 SEF 49 SEF H02A H02A H 0 0 N N N N N N -8.903 20.119 -11.061 -12.728 -2.186 -0.814 H02A SEF 50 SEF H24 H24 H 0 1 N N N N N N -9.029 21.120 -9.575 -12.731 -2.088 0.964 H24 SEF 51 SEF H10 H10 H 0 1 N N N N N N -17.459 11.317 -12.871 3.361 1.215 -0.967 H10 SEF 52 SEF H10A H10A H 0 0 N N N N N N -17.111 9.973 -14.010 3.357 1.313 0.810 H10A SEF 53 SEF H14 H14 H 0 1 N N N N N N -16.038 6.705 -11.252 8.264 1.198 -0.956 H14 SEF 54 SEF H14A H14A H 0 0 N N N N N N -14.590 6.719 -10.189 8.260 1.295 0.821 H14A SEF 55 SEF H15 H15 H 0 1 N N N N N N -17.312 7.934 -9.584 9.327 -0.939 0.946 H15 SEF 56 SEF H15A H15A H 0 0 N N N N N N -16.606 6.442 -8.876 9.331 -1.037 -0.832 H15A SEF 57 SEF H16 H16 H 0 1 N N N N N N -15.294 9.177 -8.656 10.753 0.991 -0.940 H16 SEF 58 SEF H16A H16A H 0 0 N N N N N N -16.481 8.558 -7.457 10.750 1.089 0.837 H16A SEF 59 SEF H17 H17 H 0 1 N N N N N N -14.741 6.474 -7.562 11.817 -1.146 0.962 H17 SEF 60 SEF H17A H17A H 0 0 N N N N N N -13.636 7.847 -7.910 11.821 -1.244 -0.815 H17A SEF 61 SEF H18 H18 H 0 1 N N N N N N -15.538 7.969 -5.594 13.243 0.784 -0.924 H18 SEF 62 SEF H18A H18A H 0 0 N N N N N N -14.000 7.049 -5.475 13.240 0.882 0.854 H18A SEF 63 SEF H20 H20 H 0 1 N N N N N N -12.867 9.749 -3.720 16.020 -2.166 0.135 H20 SEF 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SEF C1 P1 SING N N 1 SEF P1 F SING N N 2 SEF P1 O1 DOUB N N 3 SEF C2 C1 SING N N 4 SEF O2 P1 SING N N 5 SEF C3 C2 SING N N 6 SEF C4 C3 SING N N 7 SEF C5 C4 SING N N 8 SEF C6 C5 SING N N 9 SEF C7 C6 SING N N 10 SEF C7 C8 SING N N 11 SEF C9 C8 SING N N 12 SEF C9 C10 SING N N 13 SEF C01 O2 SING N N 14 SEF N01 C14 SING N N 15 SEF O01 C12 SING N N 16 SEF C02 C01 SING N N 17 SEF O02 C12 DOUB N N 18 SEF C10 O01 SING N N 19 SEF C12 N01 SING N N 20 SEF C14 C15 SING N N 21 SEF C15 C16 SING N N 22 SEF C16 C17 SING N N 23 SEF C17 C18 SING N N 24 SEF C18 C19 SING N N 25 SEF C19 C20 TRIP N N 26 SEF C1 H1 SING N N 27 SEF C1 H1A SING N N 28 SEF C2 H2 SING N N 29 SEF C2 H41 SING N N 30 SEF C3 H3 SING N N 31 SEF C3 H61 SING N N 32 SEF C4 H4 SING N N 33 SEF C4 H4A SING N N 34 SEF C5 H5 SING N N 35 SEF C5 H5A SING N N 36 SEF C6 H6 SING N N 37 SEF C6 H6A SING N N 38 SEF C7 H7 SING N N 39 SEF C7 H7A SING N N 40 SEF C8 H8 SING N N 41 SEF C8 H8A SING N N 42 SEF C9 H9 SING N N 43 SEF C9 H9A SING N N 44 SEF C01 H01 SING N N 45 SEF C01 H201 SING N N 46 SEF N01 HN01 SING N N 47 SEF C02 H02 SING N N 48 SEF C02 H02A SING N N 49 SEF C02 H24 SING N N 50 SEF C10 H10 SING N N 51 SEF C10 H10A SING N N 52 SEF C14 H14 SING N N 53 SEF C14 H14A SING N N 54 SEF C15 H15 SING N N 55 SEF C15 H15A SING N N 56 SEF C16 H16 SING N N 57 SEF C16 H16A SING N N 58 SEF C17 H17 SING N N 59 SEF C17 H17A SING N N 60 SEF C18 H18 SING N N 61 SEF C18 H18A SING N N 62 SEF C20 H20 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SEF SMILES ACDLabs 12.01 "FP(=O)(OCC)CCCCCCCCCCOC(=O)NCCCCCC#C" SEF InChI InChI 1.03 "InChI=1S/C20H37FNO4P/c1-3-5-6-11-14-17-22-20(23)25-18-15-12-9-7-8-10-13-16-19-27(21,24)26-4-2/h1H,4-19H2,2H3,(H,22,23)/t27-/m1/s1" SEF InChIKey InChI 1.03 JFCFPSBLBVUKMV-HHHXNRCGSA-N SEF SMILES_CANONICAL CACTVS 3.370 "CCO[P@](F)(=O)CCCCCCCCCCOC(=O)NCCCCCC#C" SEF SMILES CACTVS 3.370 "CCO[P](F)(=O)CCCCCCCCCCOC(=O)NCCCCCC#C" SEF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCO[P@](=O)(CCCCCCCCCCOC(=O)NCCCCCC#C)F" SEF SMILES "OpenEye OEToolkits" 1.7.6 "CCOP(=O)(CCCCCCCCCCOC(=O)NCCCCCC#C)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SEF "SYSTEMATIC NAME" ACDLabs 12.01 "ethyl (R)-{10-[(hept-6-yn-1-ylcarbamoyl)oxy]decyl}phosphonofluoridate" SEF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "10-[ethoxy(fluoranyl)phosphoryl]decyl N-hept-6-ynylcarbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SEF "Create component" 2013-03-22 RCSB SEF "Other modification" 2013-04-02 RCSB SEF "Initial release" 2013-04-10 RCSB SEF "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id SEF _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom P1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #