data_SEJ # _chem_comp.id SEJ _chem_comp.name beta-D-arabinopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H10 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "beta-D-arabinose; D-arabinose; arabinose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-03-06 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 150.130 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SEJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 SEJ beta-D-arabinose PDB ? 2 SEJ D-arabinose PDB ? 3 SEJ arabinose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SEJ C1 C1 C 0 1 N N R 22.452 22.430 30.097 -1.314 -0.279 -0.557 C1 SEJ 1 SEJ C2 C2 C 0 1 N N S 21.708 23.171 28.983 -0.751 1.008 0.052 C2 SEJ 2 SEJ C3 C3 C 0 1 N N R 20.780 22.186 28.266 0.775 1.004 -0.087 C3 SEJ 3 SEJ C4 C4 C 0 1 N N R 19.810 21.550 29.253 1.335 -0.252 0.587 C4 SEJ 4 SEJ C5 C5 C 0 1 N N N 20.510 20.963 30.476 0.692 -1.490 -0.043 C5 SEJ 5 SEJ O1 O1 O 0 1 N Y N 23.291 21.452 29.469 -2.732 -0.310 -0.380 O1 SEJ 6 SEJ O2 O2 O 0 1 N N N 22.618 23.793 28.050 -1.105 1.077 1.435 O2 SEJ 7 SEJ O3 O3 O 0 1 N N N 20.010 22.931 27.299 1.128 1.002 -1.472 O3 SEJ 8 SEJ O4 O4 O 0 1 N N N 18.912 22.567 29.717 2.751 -0.303 0.400 O4 SEJ 9 SEJ O5 O5 O 0 1 N N N 21.468 21.892 31.014 -0.729 -1.409 0.095 O5 SEJ 10 SEJ H1 H1 H 0 1 N N N 23.080 23.159 30.630 -1.079 -0.311 -1.620 H1 SEJ 11 SEJ H2 H2 H 0 1 N N N 21.084 23.948 29.449 -1.163 1.869 -0.473 H2 SEJ 12 SEJ H3 H3 H 0 1 N N N 21.378 21.404 27.775 1.187 1.891 0.394 H3 SEJ 13 SEJ H4 H4 H 0 1 N N N 19.251 20.752 28.743 1.109 -0.225 1.653 H4 SEJ 14 SEJ H51 H51 H 0 1 N N N 19.758 20.734 31.246 0.952 -1.538 -1.100 H51 SEJ 15 SEJ H52 H52 H 0 1 N N N 21.029 20.038 30.184 1.055 -2.385 0.463 H52 SEJ 16 SEJ HO2 HO2 H 0 1 N Y N 23.183 24.399 28.515 -2.058 1.078 1.597 HO2 SEJ 17 SEJ HO3 HO3 H 0 1 N Y N 19.424 22.342 26.838 2.081 0.999 -1.635 HO3 SEJ 18 SEJ HO4 HO4 H 0 1 N Y N 18.297 22.189 30.335 3.174 -1.074 0.802 HO4 SEJ 19 SEJ HO1 HO1 H 0 1 N Y N 23.770 20.971 30.134 -3.156 -1.099 -0.742 HO1 SEJ 20 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SEJ O3 C3 SING N N 1 SEJ O2 C2 SING N N 2 SEJ C3 C2 SING N N 3 SEJ C3 C4 SING N N 4 SEJ C2 C1 SING N N 5 SEJ C4 O4 SING N N 6 SEJ C4 C5 SING N N 7 SEJ O1 C1 SING N N 8 SEJ C1 O5 SING N N 9 SEJ C5 O5 SING N N 10 SEJ C1 H1 SING N N 11 SEJ C2 H2 SING N N 12 SEJ C3 H3 SING N N 13 SEJ C4 H4 SING N N 14 SEJ C5 H51 SING N N 15 SEJ C5 H52 SING N N 16 SEJ O2 HO2 SING N N 17 SEJ O3 HO3 SING N N 18 SEJ O4 HO4 SING N N 19 SEJ O1 HO1 SING N N 20 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SEJ InChI InChI 1.03 "InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3-,4+,5-/m1/s1" SEJ InChIKey InChI 1.03 SRBFZHDQGSBBOR-SQOUGZDYSA-N SEJ SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1CO[C@@H](O)[C@@H](O)[C@@H]1O" SEJ SMILES CACTVS 3.385 "O[CH]1CO[CH](O)[CH](O)[CH]1O" SEJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H]([C@H]([C@@H]([C@@H](O1)O)O)O)O" SEJ SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C(C(O1)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SEJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{S},4~{R},5~{R})-oxane-2,3,4,5-tetrol" SEJ "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DArapb SEJ "COMMON NAME" GMML 1.0 b-D-arabinopyranose SEJ "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-Arap SEJ "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Ara # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support SEJ "CARBOHYDRATE ISOMER" D PDB ? SEJ "CARBOHYDRATE RING" pyranose PDB ? SEJ "CARBOHYDRATE ANOMER" beta PDB ? SEJ "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SEJ "Create component" 2020-03-06 RCSB SEJ "Other modification" 2020-06-03 RCSB SEJ "Other modification" 2020-06-10 RCSB SEJ "Other modification" 2020-07-03 RCSB SEJ "Modify component atom id" 2020-07-17 RCSB SEJ "Initial release" 2020-07-29 RCSB ##