data_SEP # _chem_comp.id SEP _chem_comp.name PHOSPHOSERINE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H8 N O6 P" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms PHOSPHONOSERINE _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 185.072 _chem_comp.one_letter_code S _chem_comp.three_letter_code SEP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1BX6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SEP N N N 0 1 N N N Y Y N 12.751 44.134 -4.949 1.855 0.421 1.751 N SEP 1 SEP CA CA C 0 1 N N S Y N N 12.373 44.600 -6.265 0.401 0.620 1.687 CA SEP 2 SEP CB CB C 0 1 N N N N N N 11.077 45.353 -6.305 -0.139 0.015 0.391 CB SEP 3 SEP OG OG O 0 1 N N N N N N 10.895 45.809 -7.608 0.477 0.655 -0.727 OG SEP 4 SEP C C C 0 1 N N N Y N Y 13.435 45.364 -6.941 -0.249 -0.053 2.867 C SEP 5 SEP O O O 0 1 N N N Y N Y 14.373 45.871 -6.303 0.254 -1.038 3.354 O SEP 6 SEP OXT OXT O 0 1 N Y N Y N Y 13.281 45.410 -8.244 -1.389 0.439 3.377 OXT SEP 7 SEP P P P 0 1 N N N N N N 9.607 45.328 -8.384 -0.135 -0.027 -2.050 P SEP 8 SEP O1P O1P O 0 1 N N N N N N 9.500 46.086 -9.633 -1.601 0.172 -2.074 O1P SEP 9 SEP O2P O2P O 0 1 N N N N N N 9.829 43.907 -8.669 0.520 0.649 -3.356 O2P SEP 10 SEP O3P O3P O 0 1 N N N N N N 8.402 45.541 -7.535 0.191 -1.603 -2.041 O3P SEP 11 SEP H H H 0 1 N N N Y Y N 13.632 43.621 -4.921 2.237 0.796 0.895 H SEP 12 SEP H2 2HN H 0 1 N Y N Y Y N 12.001 43.575 -4.540 2.013 -0.574 1.727 H2 SEP 13 SEP HA HA H 0 1 N N N Y N N 12.213 43.656 -6.837 0.179 1.687 1.711 HA SEP 14 SEP HB2 1HB H 0 1 N N N N N N 10.214 44.753 -5.930 0.082 -1.051 0.367 HB2 SEP 15 SEP HB3 2HB H 0 1 N N N N N N 11.026 46.170 -5.548 -1.218 0.163 0.344 HB3 SEP 16 SEP HXT HXT H 0 1 N Y N Y N Y 13.966 45.902 -8.680 -1.807 0.006 4.134 HXT SEP 17 SEP HOP2 2HOP H 0 0 N N N N N N 9.054 43.617 -9.135 0.127 0.212 -4.124 HOP2 SEP 18 SEP HOP3 3HOP H 0 0 N N N N N N 7.627 45.251 -8.001 1.154 -1.689 -2.025 HOP3 SEP 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SEP N CA SING N N 1 SEP N H SING N N 2 SEP N H2 SING N N 3 SEP CA CB SING N N 4 SEP CA C SING N N 5 SEP CA HA SING N N 6 SEP CB OG SING N N 7 SEP CB HB2 SING N N 8 SEP CB HB3 SING N N 9 SEP OG P SING N N 10 SEP C O DOUB N N 11 SEP C OXT SING N N 12 SEP OXT HXT SING N N 13 SEP P O1P DOUB N N 14 SEP P O2P SING N N 15 SEP P O3P SING N N 16 SEP O2P HOP2 SING N N 17 SEP O3P HOP3 SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SEP SMILES ACDLabs 10.04 "O=P(O)(O)OCC(C(=O)O)N" SEP SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CO[P](O)(O)=O)C(O)=O" SEP SMILES CACTVS 3.341 "N[CH](CO[P](O)(O)=O)C(O)=O" SEP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H](C(=O)O)N)OP(=O)(O)O" SEP SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(=O)O)N)OP(=O)(O)O" SEP InChI InChI 1.03 "InChI=1S/C3H8NO6P/c4-2(3(5)6)1-10-11(7,8)9/h2H,1,4H2,(H,5,6)(H2,7,8,9)/t2-/m0/s1" SEP InChIKey InChI 1.03 BZQFBWGGLXLEPQ-REOHCLBHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SEP "SYSTEMATIC NAME" ACDLabs 10.04 O-phosphono-L-serine SEP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-phosphonooxy-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SEP "Create component" 1999-07-08 RCSB SEP "Modify descriptor" 2011-06-04 RCSB SEP "Modify synonyms" 2021-03-01 PDBE SEP "Modify backbone" 2023-11-03 PDBE SEP "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id SEP _pdbx_chem_comp_synonyms.name PHOSPHONOSERINE _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 SEP SER Phosphorylation "Named protein modification" "Amino-acid side chain" "Any position" ? ? PTM-0253 ? 2 SEP LLP None "Covalent chemical modification" "Amino-acid side chain" "Any position" N "C4'" ? ? #