data_SFG # _chem_comp.id SFG _chem_comp.name SINEFUNGIN _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H23 N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ADENOSYL-ORNITHINE _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2025-01-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 381.387 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SFG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1AQJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SFG N N N 0 1 N N N N N N 6.853 40.335 42.914 6.756 0.396 0.788 N SFG 1 SFG CA CA C 0 1 N N S N N N 5.850 39.641 42.119 5.956 -0.819 0.584 CA SFG 2 SFG C C C 0 1 N N N N N N 5.607 40.397 40.805 6.780 -1.846 -0.151 C SFG 3 SFG O O O 0 1 N N N N N N 6.196 41.482 40.631 7.751 -1.502 -0.782 O SFG 4 SFG OXT OXT O 0 1 N N N N N N 4.840 39.903 39.956 6.434 -3.142 -0.104 OXT SFG 5 SFG CB CB C 0 1 N N N N N N 4.546 39.512 42.915 4.713 -0.478 -0.240 CB SFG 6 SFG CG CG C 0 1 N N N N N N 3.613 38.444 42.387 3.815 0.468 0.559 CG SFG 7 SFG CD CD C 0 1 N N S N N N 2.156 38.562 42.842 2.572 0.809 -0.265 CD SFG 8 SFG NE NE N 0 1 N N N N N N 1.987 38.008 44.217 2.969 1.567 -1.460 NE SFG 9 SFG "C5'" "C5'" C 0 1 N N N N N N 1.323 37.793 41.814 1.616 1.654 0.579 "C5'" SFG 10 SFG "C4'" "C4'" C 0 1 N N R N N N -0.126 37.439 42.111 0.320 1.890 -0.199 "C4'" SFG 11 SFG "O4'" "O4'" O 0 1 N N N N N N -0.816 38.542 42.735 -0.379 0.646 -0.374 "O4'" SFG 12 SFG "C3'" "C3'" C 0 1 N N S N N N -0.865 37.095 40.826 -0.607 2.829 0.598 "C3'" SFG 13 SFG "O3'" "O3'" O 0 1 N N N N N N -1.517 35.823 40.969 -0.882 4.014 -0.151 "O3'" SFG 14 SFG "C2'" "C2'" C 0 1 N N R N N N -1.892 38.182 40.666 -1.900 2.003 0.799 "C2'" SFG 15 SFG "O2'" "O2'" O 0 1 N N N N N N -3.117 37.646 40.170 -3.059 2.820 0.622 "O2'" SFG 16 SFG "C1'" "C1'" C 0 1 N N R N N N -2.066 38.741 42.059 -1.790 0.946 -0.330 "C1'" SFG 17 SFG N9 N9 N 0 1 Y N N N N N -2.442 40.162 42.027 -2.562 -0.252 0.009 N9 SFG 18 SFG C8 C8 C 0 1 Y N N N N N -2.081 41.132 41.158 -2.100 -1.347 0.676 C8 SFG 19 SFG N7 N7 N 0 1 Y N N N N N -2.630 42.289 41.312 -3.053 -2.224 0.804 N7 SFG 20 SFG C5 C5 C 0 1 Y N N N N N -3.453 42.078 42.412 -4.184 -1.749 0.229 C5 SFG 21 SFG C6 C6 C 0 1 Y N N N N N -4.398 42.878 43.036 -5.490 -2.240 0.064 C6 SFG 22 SFG N6 N6 N 0 1 N N N N N N -4.614 44.136 42.687 -5.846 -3.485 0.552 N6 SFG 23 SFG N1 N1 N 0 1 Y N N N N N -5.122 42.327 44.025 -6.376 -1.481 -0.572 N1 SFG 24 SFG C2 C2 C 0 1 Y N N N N N -4.905 41.062 44.354 -6.046 -0.292 -1.042 C2 SFG 25 SFG N3 N3 N 0 1 Y N N N N N -4.046 40.202 43.839 -4.835 0.208 -0.911 N3 SFG 26 SFG C4 C4 C 0 1 Y N N N N N -3.339 40.783 42.858 -3.884 -0.476 -0.283 C4 SFG 27 SFG HN1 HN1 H 0 1 N N N N N N 7.006 39.837 43.768 7.050 0.787 -0.094 HN1 SFG 28 SFG HN2 HN2 H 0 1 N N N N N N 7.709 40.385 42.400 6.249 1.075 1.335 HN2 SFG 29 SFG HA HA H 0 1 N N N N N N 6.215 38.631 41.880 5.652 -1.221 1.550 HA SFG 30 SFG HXT HXT H 0 1 N N N N N N 4.794 40.476 39.199 6.992 -3.763 -0.590 HXT SFG 31 SFG HB1 HB1 H 0 1 N N N N N N 4.804 39.257 43.953 5.014 0.005 -1.170 HB1 SFG 32 SFG HB2 HB2 H 0 1 N N N N N N 4.021 40.477 42.868 4.165 -1.393 -0.468 HB2 SFG 33 SFG HG1 HG1 H 0 1 N N N N N N 3.624 38.508 41.289 3.513 -0.015 1.488 HG1 SFG 34 SFG HG2 HG2 H 0 1 N N N N N N 3.991 37.472 42.735 4.363 1.383 0.786 HG2 SFG 35 SFG HD HD H 0 1 N N N N N N 1.831 39.612 42.894 2.073 -0.111 -0.568 HD SFG 36 SFG HNE1 HNE1 H 0 0 N N N N N N 1.031 38.094 44.496 2.174 1.748 -2.054 HNE1 SFG 37 SFG HNE2 HNE2 H 0 0 N N N N N N 2.250 37.043 44.222 3.434 2.425 -1.206 HNE2 SFG 38 SFG "H5'1" "H5'1" H 0 0 N N N N N N 1.303 38.419 40.910 1.391 1.129 1.508 "H5'1" SFG 39 SFG "H5'2" "H5'2" H 0 0 N N N N N N 1.843 36.836 41.657 2.082 2.612 0.807 "H5'2" SFG 40 SFG "H4'" "H4'" H 0 1 N N N N N N -0.114 36.575 42.792 0.547 2.328 -1.172 "H4'" SFG 41 SFG "H3'" "H3'" H 0 1 N N N N N N -0.191 37.029 39.959 -0.159 3.081 1.559 "H3'" SFG 42 SFG "HO3'" "HO3'" H 0 0 N N N N N N -1.978 35.611 40.166 -1.461 4.641 0.303 "HO3'" SFG 43 SFG "H2'" "H2'" H 0 1 N N N N N N -1.584 38.954 39.945 -1.909 1.526 1.779 "H2'" SFG 44 SFG "HO2'" "HO2'" H 0 0 N N N N N N -3.754 38.345 40.075 -3.125 3.551 1.251 "HO2'" SFG 45 SFG "H1'" "H1'" H 0 1 N N N N N N -2.883 38.229 42.588 -2.124 1.364 -1.280 "H1'" SFG 46 SFG H8 H8 H 0 1 N N N N N N -1.365 40.947 40.371 -1.092 -1.469 1.044 H8 SFG 47 SFG HN61 HN61 H 0 0 N N N N N N -5.341 44.520 43.256 -5.190 -4.030 1.015 HN61 SFG 48 SFG HN62 HN62 H 0 0 N N N N N N -3.776 44.666 42.815 -6.751 -3.813 0.432 HN62 SFG 49 SFG H2 H2 H 0 1 N N N N N N -5.518 40.680 45.157 -6.797 0.293 -1.553 H2 SFG 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SFG N CA SING N N 1 SFG N HN1 SING N N 2 SFG N HN2 SING N N 3 SFG CA C SING N N 4 SFG CA CB SING N N 5 SFG CA HA SING N N 6 SFG C O DOUB N N 7 SFG C OXT SING N N 8 SFG OXT HXT SING N N 9 SFG CB CG SING N N 10 SFG CB HB1 SING N N 11 SFG CB HB2 SING N N 12 SFG CG CD SING N N 13 SFG CG HG1 SING N N 14 SFG CG HG2 SING N N 15 SFG CD NE SING N N 16 SFG CD "C5'" SING N N 17 SFG CD HD SING N N 18 SFG NE HNE1 SING N N 19 SFG NE HNE2 SING N N 20 SFG "C5'" "C4'" SING N N 21 SFG "C5'" "H5'1" SING N N 22 SFG "C5'" "H5'2" SING N N 23 SFG "C4'" "O4'" SING N N 24 SFG "C4'" "C3'" SING N N 25 SFG "C4'" "H4'" SING N N 26 SFG "O4'" "C1'" SING N N 27 SFG "C3'" "O3'" SING N N 28 SFG "C3'" "C2'" SING N N 29 SFG "C3'" "H3'" SING N N 30 SFG "O3'" "HO3'" SING N N 31 SFG "C2'" "O2'" SING N N 32 SFG "C2'" "C1'" SING N N 33 SFG "C2'" "H2'" SING N N 34 SFG "O2'" "HO2'" SING N N 35 SFG "C1'" N9 SING N N 36 SFG "C1'" "H1'" SING N N 37 SFG N9 C8 SING Y N 38 SFG N9 C4 SING Y N 39 SFG C8 N7 DOUB Y N 40 SFG C8 H8 SING N N 41 SFG N7 C5 SING Y N 42 SFG C5 C6 SING Y N 43 SFG C5 C4 DOUB Y N 44 SFG C6 N6 SING N N 45 SFG C6 N1 DOUB Y N 46 SFG N6 HN61 SING N N 47 SFG N6 HN62 SING N N 48 SFG N1 C2 SING Y N 49 SFG C2 N3 DOUB Y N 50 SFG C2 H2 SING N N 51 SFG N3 C4 SING Y N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SFG SMILES ACDLabs 12.01 "O=C(O)C(N)CCC(N)CC3OC(n2cnc1c(ncnc12)N)C(O)C3O" SFG SMILES_CANONICAL CACTVS 3.370 "N[C@@H](CC[C@H](N)C(O)=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" SFG SMILES CACTVS 3.370 "N[CH](CC[CH](N)C(O)=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" SFG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)C[C@H](CC[C@@H](C(=O)O)N)N)O)O)N" SFG SMILES "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CC(CCC(C(=O)O)N)N)O)O)N" SFG InChI InChI 1.03 "InChI=1S/C15H23N7O5/c16-6(1-2-7(17)15(25)26)3-8-10(23)11(24)14(27-8)22-5-21-9-12(18)19-4-20-13(9)22/h4-8,10-11,14,23-24H,1-3,16-17H2,(H,25,26)(H2,18,19,20)/t6-,7-,8+,10+,11+,14+/m0/s1" SFG InChIKey InChI 1.03 LMXOHSDXUQEUSF-YECHIGJVSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SFG "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,5S)-2,5-diamino-6-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]hexanoic acid (non-preferred name)" SFG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S,5S)-6-[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]-2,5-bis(azanyl)hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SFG "Create component" 1999-07-08 RCSB SFG "Modify name" 2011-02-17 RCSB SFG "Modify descriptor" 2011-06-04 RCSB SFG "Modify synonyms" 2020-06-05 PDBE SFG "Modify PCM" 2025-01-14 PDBC # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id SFG _pdbx_chem_comp_synonyms.name ADENOSYL-ORNITHINE _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id SFG _pdbx_chem_comp_pcm.modified_residue_id THR _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom N _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG1 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #