data_SFR
#
_chem_comp.id SFR
_chem_comp.name "(2R)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-5-[(2R)-oxolan-2-yl]-2,3-dihydro-1,3-thiazole-4-carboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H17 N O6 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "FAROPENEM, unbound, hydrolyzed form"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-11-27
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 303.331
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SFR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5UJ4
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SFR O72 O1 O 0 1 N N N N N N 22.246 13.901 10.428 -4.393 0.661 -1.055 O72 SFR 1
SFR C7 C1 C 0 1 N N N N N N 22.811 14.718 9.700 -3.329 0.721 -0.240 C7 SFR 2
SFR C6 C2 C 0 1 N N S N N N 22.181 15.282 8.380 -2.250 -0.327 -0.331 C6 SFR 3
SFR N4 N1 N 0 1 N N N N N N 21.036 16.727 9.886 -0.548 1.280 0.437 N4 SFR 4
SFR C5 C3 C 0 1 N N R N N N 21.937 16.723 8.571 -1.160 -0.028 0.700 C5 SFR 5
SFR C3 C4 C 0 1 N N N N N N 19.828 17.488 9.587 0.808 1.224 0.151 C3 SFR 6
SFR C2 C5 C 0 1 N N N N N N 19.906 18.193 8.221 1.429 0.035 0.141 C2 SFR 7
SFR S1 S1 S 0 1 N N N N N N 20.944 17.425 7.368 0.222 -1.203 0.527 S1 SFR 8
SFR C31 C6 C 0 1 N N N N N N 18.765 17.439 10.640 1.530 2.408 -0.128 C31 SFR 9
SFR O71 O2 O 0 1 N N N N N N 23.830 15.214 10.111 -3.235 1.615 0.567 O71 SFR 10
SFR C61 C7 C 0 1 N N R N N N 23.207 14.997 7.244 -2.853 -1.705 -0.051 C61 SFR 11
SFR O62 O3 O 0 1 N N N N N N 22.644 15.263 6.053 -3.811 -2.021 -1.063 O62 SFR 12
SFR C62 C8 C 0 1 N N N N N N 23.569 13.525 7.230 -3.540 -1.693 1.316 C62 SFR 13
SFR C14 C9 C 0 1 N N R N N N 20.116 19.622 8.127 2.888 -0.205 -0.148 C14 SFR 14
SFR C15 C10 C 0 1 N N N N N N 18.894 20.511 8.115 3.584 -0.837 1.084 C15 SFR 15
SFR C16 C11 C 0 1 N N N N N N 19.352 21.705 8.399 4.778 -1.563 0.408 C16 SFR 16
SFR C17 C12 C 0 1 N N N N N N 20.908 21.521 8.778 4.171 -2.007 -0.941 C17 SFR 17
SFR O18 O4 O 0 1 N N N N N N 20.998 20.322 9.201 3.035 -1.173 -1.199 O18 SFR 18
SFR O32 O5 O 0 1 N N N N N N 17.654 17.369 10.287 2.693 2.343 -0.483 O32 SFR 19
SFR O31 O6 O 0 1 N N N N N N 19.076 17.473 11.792 0.929 3.611 -0.002 O31 SFR 20
SFR H1 H1 H 0 1 N N N N N N 22.740 13.798 11.233 -5.059 1.356 -0.959 H1 SFR 21
SFR H2 H2 H 0 1 N N N N N N 21.240 14.753 8.168 -1.817 -0.317 -1.332 H2 SFR 22
SFR H3 H3 H 0 1 N N N N N N 20.795 15.790 10.138 -1.049 2.110 0.458 H3 SFR 23
SFR H5 H5 H 0 1 N N N N N N 22.855 17.315 8.701 -1.570 -0.063 1.709 H5 SFR 24
SFR H8 H8 H 0 1 N N N N N N 24.112 15.597 7.419 -2.062 -2.455 -0.053 H8 SFR 25
SFR H9 H9 H 0 1 N N N N N N 22.399 16.180 6.016 -4.234 -2.882 -0.949 H9 SFR 26
SFR H10 H10 H 0 1 N N N N N N 24.036 13.253 8.188 -3.896 -2.695 1.553 H10 SFR 27
SFR H11 H11 H 0 1 N N N N N N 22.659 12.925 7.083 -2.829 -1.371 2.077 H11 SFR 28
SFR H12 H12 H 0 1 N N N N N N 24.274 13.329 6.409 -4.384 -1.004 1.292 H12 SFR 29
SFR H13 H13 H 0 1 N N N N N N 20.626 19.801 7.169 3.377 0.729 -0.423 H13 SFR 30
SFR H14 H14 H 0 1 N N N N N N 18.418 20.503 7.123 3.931 -0.069 1.775 H14 SFR 31
SFR H15 H15 H 0 1 N N N N N N 18.168 20.183 8.873 2.926 -1.546 1.586 H15 SFR 32
SFR H16 H16 H 0 1 N N N N N N 19.249 22.368 7.528 5.611 -0.878 0.251 H16 SFR 33
SFR H17 H17 H 0 1 N N N N N N 18.801 22.130 9.251 5.090 -2.427 0.995 H17 SFR 34
SFR H18 H18 H 0 1 N N N N N N 21.543 21.669 7.892 4.907 -1.886 -1.735 H18 SFR 35
SFR H19 H19 H 0 1 N N N N N N 21.203 22.233 9.563 3.858 -3.049 -0.880 H19 SFR 36
SFR H20 H20 H 0 1 N N N N N N 18.296 17.435 12.332 1.501 4.361 -0.214 H20 SFR 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SFR O62 C61 SING N N 1
SFR C62 C61 SING N N 2
SFR C61 C6 SING N N 3
SFR S1 C2 SING N N 4
SFR S1 C5 SING N N 5
SFR C15 C14 SING N N 6
SFR C15 C16 SING N N 7
SFR C14 C2 SING N N 8
SFR C14 O18 SING N N 9
SFR C2 C3 DOUB N N 10
SFR C6 C5 SING N N 11
SFR C6 C7 SING N N 12
SFR C16 C17 SING N N 13
SFR C5 N4 SING N N 14
SFR C17 O18 SING N N 15
SFR C3 N4 SING N N 16
SFR C3 C31 SING N N 17
SFR C7 O71 DOUB N N 18
SFR C7 O72 SING N N 19
SFR O32 C31 DOUB N N 20
SFR C31 O31 SING N N 21
SFR O72 H1 SING N N 22
SFR C6 H2 SING N N 23
SFR N4 H3 SING N N 24
SFR C5 H5 SING N N 25
SFR C61 H8 SING N N 26
SFR O62 H9 SING N N 27
SFR C62 H10 SING N N 28
SFR C62 H11 SING N N 29
SFR C62 H12 SING N N 30
SFR C14 H13 SING N N 31
SFR C15 H14 SING N N 32
SFR C15 H15 SING N N 33
SFR C16 H16 SING N N 34
SFR C16 H17 SING N N 35
SFR C17 H18 SING N N 36
SFR C17 H19 SING N N 37
SFR O31 H20 SING N N 38
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SFR SMILES ACDLabs 12.01 "OC(=O)C(C1NC(C(O)=O)=C(S1)C2OCCC2)C(O)C"
SFR InChI InChI 1.03 "InChI=1S/C12H17NO6S/c1-5(14)7(11(15)16)10-13-8(12(17)18)9(20-10)6-3-2-4-19-6/h5-7,10,13-14H,2-4H2,1H3,(H,15,16)(H,17,18)/t5-,6-,7-,10-/m1/s1"
SFR InChIKey InChI 1.03 CGJDLFMMMJEANA-DAGMQNCNSA-N
SFR SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@H]([C@@H]1NC(=C(S1)[C@H]2CCCO2)C(O)=O)C(O)=O"
SFR SMILES CACTVS 3.385 "C[CH](O)[CH]([CH]1NC(=C(S1)[CH]2CCCO2)C(O)=O)C(O)=O"
SFR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@H]([C@H]([C@@H]1NC(=C(S1)[C@H]2CCCO2)C(=O)O)C(=O)O)O"
SFR SMILES "OpenEye OEToolkits" 2.0.6 "CC(C(C1NC(=C(S1)C2CCCO2)C(=O)O)C(=O)O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SFR "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-5-[(2R)-oxolan-2-yl]-2,3-dihydro-1,3-thiazole-4-carboxylic acid"
SFR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-5-[(2~{R})-oxolan-2-yl]-2,3-dihydro-1,3-thiazole-4-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SFR "Create component" 2007-11-27 PDBJ
SFR "Modify descriptor" 2011-06-04 RCSB
SFR "Other modification" 2017-04-11 RCSB
SFR "Modify synonyms" 2020-06-05 PDBE
SFR "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id SFR
_pdbx_chem_comp_synonyms.name "FAROPENEM, unbound, hydrolyzed form"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id SFR
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C7
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#