data_SFU # _chem_comp.id SFU _chem_comp.name "methyl 1-seleno-alpha-L-fucopyranoside" _chem_comp.type L-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H14 O4 Se" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;METHYL 6-DEOXY-1-SELENO-ALPHA-L-GALACTOPYRANOSIDE; methyl 1-seleno-alpha-L-fucoside; methyl 1-seleno-L-fucoside; methyl 1-seleno-fucoside ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-08-13 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 241.144 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SFU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2WQ4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 SFU "METHYL 6-DEOXY-1-SELENO-ALPHA-L-GALACTOPYRANOSIDE" PDB ? 2 SFU "methyl 1-seleno-alpha-L-fucoside" PDB ? 3 SFU "methyl 1-seleno-L-fucoside" PDB ? 4 SFU "methyl 1-seleno-fucoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SFU C1 C1 C 0 1 N N S 30.571 5.024 -0.920 -0.280 0.094 0.285 C1 SFU 1 SFU C2 C2 C 0 1 N N S 29.268 5.772 -1.219 0.443 -1.255 0.331 C2 SFU 2 SFU C3 C3 C 0 1 N N R 28.959 5.694 -2.705 1.951 -1.013 0.456 C3 SFU 3 SFU C4 C4 C 0 1 N N S 28.909 4.242 -3.181 2.416 -0.142 -0.716 C4 SFU 4 SFU C5 C5 C 0 1 N N S 30.228 3.574 -2.843 1.616 1.163 -0.721 C5 SFU 5 SFU C6 C6 C 0 1 N N N 30.247 2.094 -3.192 1.893 1.936 0.570 C6 SFU 6 SFU O2 O2 O 0 1 N N N 29.389 7.155 -0.888 0.175 -1.982 -0.870 O2 SFU 7 SFU O3 O3 O 0 1 N N N 27.715 6.365 -2.944 2.227 -0.343 1.688 O3 SFU 8 SFU O4 O4 O 0 1 N N N 27.822 3.550 -2.529 3.807 0.150 -0.570 O4 SFU 9 SFU O5 O5 O 0 1 N N N 30.477 3.682 -1.438 0.221 0.865 -0.808 O5 SFU 10 SFU CM CM C 0 1 N N N 33.544 4.860 -0.893 -2.867 1.640 0.024 CM SFU 11 SFU SE SE SE 0 1 N N N 32.136 6.004 -1.651 -2.203 -0.204 0.047 SE SFU 12 SFU H1 H1 H 0 1 N N N 30.722 4.964 0.168 -0.108 0.630 1.218 H1 SFU 13 SFU H2 H2 H 0 1 N N N 28.472 5.305 -0.620 0.094 -1.827 1.190 H2 SFU 14 SFU H3 H3 H 0 1 N N N 29.758 6.187 -3.278 2.477 -1.967 0.433 H3 SFU 15 SFU HO2 HA H 0 1 N Y N 29.416 7.254 0.056 -0.763 -2.167 -1.016 HO2 SFU 16 SFU H4 H4 H 0 1 N N N 28.744 4.209 -4.268 2.251 -0.675 -1.653 H4 SFU 17 SFU HO3 HB H 0 1 N Y N 27.271 6.513 -2.117 1.951 -0.835 2.473 HO3 SFU 18 SFU H5 H5 H 0 1 N N N 30.997 4.088 -3.439 1.913 1.768 -1.578 H5 SFU 19 SFU HO4 HC H 0 1 N Y N 28.044 3.398 -1.618 4.170 0.699 -1.279 HO4 SFU 20 SFU H61 H61C H 0 1 N N N 30.252 1.975 -4.285 2.969 2.020 0.720 H61 SFU 21 SFU H62 H62C H 0 1 N N N 31.150 1.629 -2.769 1.457 2.933 0.497 H62 SFU 22 SFU H63 H63C H 0 1 N N N 29.353 1.608 -2.774 1.449 1.406 1.413 H63 SFU 23 SFU HM1 HM1 H 0 1 N N N 34.298 4.646 -1.664 -2.615 2.128 0.965 HM1 SFU 24 SFU HM2 HM2 H 0 1 N N N 34.021 5.377 -0.047 -2.405 2.181 -0.802 HM2 SFU 25 SFU HM3 HM3 H 0 1 N N N 33.100 3.916 -0.543 -3.949 1.634 -0.105 HM3 SFU 26 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SFU C1 C2 SING N N 1 SFU C1 O5 SING N N 2 SFU C1 SE SING N N 3 SFU C2 C3 SING N N 4 SFU C2 O2 SING N N 5 SFU C3 C4 SING N N 6 SFU C3 O3 SING N N 7 SFU C4 C5 SING N N 8 SFU C4 O4 SING N N 9 SFU C5 C6 SING N N 10 SFU C5 O5 SING N N 11 SFU CM SE SING N N 12 SFU C1 H1 SING N N 13 SFU C2 H2 SING N N 14 SFU C3 H3 SING N N 15 SFU O2 HO2 SING N N 16 SFU C4 H4 SING N N 17 SFU O3 HO3 SING N N 18 SFU C5 H5 SING N N 19 SFU O4 HO4 SING N N 20 SFU C6 H61 SING N N 21 SFU C6 H62 SING N N 22 SFU C6 H63 SING N N 23 SFU CM HM1 SING N N 24 SFU CM HM2 SING N N 25 SFU CM HM3 SING N N 26 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SFU SMILES ACDLabs 10.04 "OC1C(O)C(O)C(OC1[Se]C)C" SFU SMILES_CANONICAL CACTVS 3.352 "C[Se][C@@H]1O[C@@H](C)[C@@H](O)[C@@H](O)[C@@H]1O" SFU SMILES CACTVS 3.352 "C[Se][CH]1O[CH](C)[CH](O)[CH](O)[CH]1O" SFU SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)[Se]C)O)O)O" SFU SMILES "OpenEye OEToolkits" 1.6.1 "CC1C(C(C(C(O1)[Se]C)O)O)O" SFU InChI InChI 1.03 "InChI=1S/C7H14O4Se/c1-3-4(8)5(9)6(10)7(11-3)12-2/h3-10H,1-2H3/t3-,4+,5+,6-,7-/m0/s1" SFU InChIKey InChI 1.03 VHTNTJQSKJZERS-XUVCUMPTSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SFU "SYSTEMATIC NAME" ACDLabs 10.04 "methyl 6-deoxy-1-seleno-alpha-L-galactopyranoside" SFU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S,3S,4R,5S,6S)-2-methyl-6-methylselanyl-oxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support SFU "CARBOHYDRATE ISOMER" L PDB ? SFU "CARBOHYDRATE RING" pyranose PDB ? SFU "CARBOHYDRATE ANOMER" alpha PDB ? SFU "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SFU "Create component" 2009-08-13 EBI SFU "Modify descriptor" 2011-06-04 RCSB SFU "Other modification" 2020-07-03 RCSB SFU "Modify name" 2020-07-17 RCSB SFU "Modify synonyms" 2020-07-17 RCSB SFU "Modify internal type" 2020-07-17 RCSB SFU "Modify linking type" 2020-07-17 RCSB SFU "Modify atom id" 2020-07-17 RCSB SFU "Modify component atom id" 2020-07-17 RCSB SFU "Modify leaving atom flag" 2020-07-17 RCSB ##