data_SFV # _chem_comp.id SFV _chem_comp.name "[[[(2~{R},3~{S},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]methylphosphonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H18 N3 O12 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-03-09 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 465.184 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SFV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6W2M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SFV C3B C1 C 0 1 N N N 4.859 1.160 14.688 -4.572 1.114 -0.887 C3B SFV 1 SFV O2B O1 O 0 1 N N N 2.787 2.954 14.281 -4.601 -1.487 0.165 O2B SFV 2 SFV PA P1 P 0 1 N N N 5.095 5.266 14.700 -1.157 -1.045 0.868 PA SFV 3 SFV O1A O2 O 0 1 N N N 3.959 5.325 15.689 -0.812 -0.364 2.285 O1A SFV 4 SFV O2A O3 O 0 1 N N N 6.390 5.500 15.400 -1.628 -2.431 1.087 O2A SFV 5 SFV O3A O4 O 0 1 N N N 5.211 3.839 13.943 -2.310 -0.196 0.131 O3A SFV 6 SFV "O5'" O5 O 0 1 N N N 4.840 6.425 13.517 0.164 -1.067 -0.053 "O5'" SFV 7 SFV PB P2 P 0 1 N N N 4.146 2.593 13.762 -3.899 -0.049 0.345 PB SFV 8 SFV O1B O6 O 0 1 N N N 4.092 2.185 12.318 -4.168 0.464 1.706 O1B SFV 9 SFV PG P3 P 0 1 N N N 4.260 1.245 16.466 -6.371 1.281 -0.646 PG SFV 10 SFV O1G O7 O 0 1 N N N 5.390 0.786 17.393 -7.073 -0.157 -0.826 O1G SFV 11 SFV O2G O8 O 0 1 N N N 3.038 0.360 16.533 -6.641 1.794 0.716 O2G SFV 12 SFV O3G O9 O 0 1 N N N 3.960 2.685 16.802 -6.966 2.308 -1.734 O3G SFV 13 SFV "C5'" C2 C 0 1 N N N 3.598 6.374 12.813 1.329 -1.826 0.276 "C5'" SFV 14 SFV "C4'" C3 C 0 1 N N R 3.838 6.462 11.390 2.392 -1.622 -0.805 "C4'" SFV 15 SFV "O4'" O10 O 0 1 N N N 4.815 7.776 11.079 2.900 -0.271 -0.771 "O4'" SFV 16 SFV "C1'" C4 C 0 1 N N R 5.538 7.510 10.023 4.185 -0.289 -1.415 "C1'" SFV 17 SFV N1 N1 N 0 1 N N N 6.983 7.527 10.266 5.077 0.681 -0.775 N1 SFV 18 SFV C6 C5 C 0 1 N N N 7.488 7.218 11.445 5.708 1.623 -1.531 C6 SFV 19 SFV C2 C6 C 0 1 N N N 7.770 7.838 9.242 5.264 0.642 0.557 C2 SFV 20 SFV O2 O11 O 0 1 N N N 7.267 8.089 8.212 4.687 -0.205 1.219 O2 SFV 21 SFV N3 N2 N 0 1 N N N 9.072 7.860 9.362 6.068 1.512 1.164 N3 SFV 22 SFV C4 C7 C 0 1 N N N 9.665 7.554 10.519 6.707 2.443 0.468 C4 SFV 23 SFV N4 N3 N 0 1 N N N 11.068 7.560 10.649 7.536 3.337 1.107 N4 SFV 24 SFV C5 C8 C 0 1 N N N 8.871 7.234 11.603 6.529 2.515 -0.928 C5 SFV 25 SFV "C2'" C9 C 0 1 N N N 5.123 6.001 9.571 4.757 -1.711 -1.255 "C2'" SFV 26 SFV "C3'" C10 C 0 1 N N S 4.529 5.395 10.870 3.643 -2.490 -0.512 "C3'" SFV 27 SFV "O3'" O12 O 0 1 N N N 3.669 4.263 10.523 3.494 -3.806 -1.049 "O3'" SFV 28 SFV H1 H1 H 0 1 N N N 4.526 0.218 14.228 -4.097 2.088 -0.766 H1 SFV 29 SFV H2 H2 H 0 1 N N N 5.958 1.211 14.663 -4.374 0.736 -1.890 H2 SFV 30 SFV H3 H3 H 0 1 N N N 2.146 2.854 13.587 -4.465 -1.884 -0.706 H3 SFV 31 SFV H4 H4 H 0 1 N N N 4.303 5.500 16.557 -0.496 0.547 2.218 H4 SFV 32 SFV H5 H5 H 0 1 N N N 5.119 0.005 17.861 -6.938 -0.554 -1.697 H5 SFV 33 SFV H6 H6 H 0 1 N N N 3.036 2.779 17.000 -7.921 2.446 -1.664 H6 SFV 34 SFV H7 H7 H 0 1 N N N 2.964 7.216 13.129 1.720 -1.493 1.237 H7 SFV 35 SFV H8 H8 H 0 1 N N N 3.088 5.426 13.040 1.069 -2.883 0.336 H8 SFV 36 SFV H9 H9 H 0 1 N N N 2.890 6.623 10.855 1.986 -1.855 -1.790 H9 SFV 37 SFV H10 H10 H 0 1 N N N 5.301 8.181 9.184 4.073 -0.049 -2.472 H10 SFV 38 SFV H11 H11 H 0 1 N N N 6.842 6.958 12.270 5.555 1.657 -2.600 H11 SFV 39 SFV H12 H12 H 0 1 N N N 11.642 7.797 9.865 7.654 3.287 2.068 H12 SFV 40 SFV H13 H13 H 0 1 N N N 11.490 7.327 11.525 8.002 4.017 0.595 H13 SFV 41 SFV H14 H14 H 0 1 N N N 9.316 7.000 12.559 7.039 3.270 -1.508 H14 SFV 42 SFV H15 H15 H 0 1 N N N 4.373 6.022 8.766 4.946 -2.158 -2.231 H15 SFV 43 SFV H16 H16 H 0 1 N N N 6.004 5.433 9.237 5.671 -1.690 -0.661 H16 SFV 44 SFV H17 H17 H 0 1 N N N 5.347 5.072 11.530 3.843 -2.529 0.559 H17 SFV 45 SFV H18 H18 H 0 1 N N N 3.815 3.554 11.138 4.286 -4.355 -0.968 H18 SFV 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SFV O2 C2 DOUB N N 1 SFV C2 N3 SING N N 2 SFV C2 N1 SING N N 3 SFV N3 C4 DOUB N N 4 SFV "C2'" "C1'" SING N N 5 SFV "C2'" "C3'" SING N N 6 SFV "C1'" N1 SING N N 7 SFV "C1'" "O4'" SING N N 8 SFV N1 C6 SING N N 9 SFV C4 N4 SING N N 10 SFV C4 C5 SING N N 11 SFV "O3'" "C3'" SING N N 12 SFV "C3'" "C4'" SING N N 13 SFV "O4'" "C4'" SING N N 14 SFV "C4'" "C5'" SING N N 15 SFV C6 C5 DOUB N N 16 SFV O1B PB DOUB N N 17 SFV "C5'" "O5'" SING N N 18 SFV "O5'" PA SING N N 19 SFV PB O3A SING N N 20 SFV PB O2B SING N N 21 SFV PB C3B SING N N 22 SFV O3A PA SING N N 23 SFV C3B PG SING N N 24 SFV PA O2A DOUB N N 25 SFV PA O1A SING N N 26 SFV PG O2G DOUB N N 27 SFV PG O3G SING N N 28 SFV PG O1G SING N N 29 SFV C3B H1 SING N N 30 SFV C3B H2 SING N N 31 SFV O2B H3 SING N N 32 SFV O1A H4 SING N N 33 SFV O1G H5 SING N N 34 SFV O3G H6 SING N N 35 SFV "C5'" H7 SING N N 36 SFV "C5'" H8 SING N N 37 SFV "C4'" H9 SING N N 38 SFV "C1'" H10 SING N N 39 SFV C6 H11 SING N N 40 SFV N4 H12 SING N N 41 SFV N4 H13 SING N N 42 SFV C5 H14 SING N N 43 SFV "C2'" H15 SING N N 44 SFV "C2'" H16 SING N N 45 SFV "C3'" H17 SING N N 46 SFV "O3'" H18 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SFV InChI InChI 1.03 "InChI=1S/C10H18N3O12P3/c11-8-1-2-13(10(15)12-8)9-3-6(14)7(24-9)4-23-28(21,22)25-27(19,20)5-26(16,17)18/h1-2,6-7,9,14H,3-5H2,(H,19,20)(H,21,22)(H2,11,12,15)(H2,16,17,18)/t6-,7+,9+/m0/s1" SFV InChIKey InChI 1.03 YHOBQJYELBYSJU-LKEWCRSYSA-N SFV SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)C[P](O)(O)=O)O2" SFV SMILES CACTVS 3.385 "NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)C[P](O)(O)=O)O2" SFV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)COP(=O)(O)OP(=O)(CP(=O)(O)O)O)O" SFV SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(OC1N2C=CC(=NC2=O)N)COP(=O)(O)OP(=O)(CP(=O)(O)O)O)O" # _pdbx_chem_comp_identifier.comp_id SFV _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[[(2~{R},3~{S},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]methylphosphonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SFV "Create component" 2020-03-09 RCSB SFV "Initial release" 2020-07-22 RCSB ##