data_SGA # _chem_comp.id SGA _chem_comp.name 3-O-sulfo-beta-D-galactopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O9 S" _chem_comp.mon_nstd_parent_comp_id GAL _chem_comp.pdbx_synonyms "O3-SULFONYLGALACTOSE; 3-O-sulfo-beta-D-galactose; 3-O-sulfo-D-galactose; 3-O-sulfo-galactose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 260.219 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SGA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1BRR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 SGA O3-SULFONYLGALACTOSE PDB ? 2 SGA 3-O-sulfo-beta-D-galactose PDB ? 3 SGA 3-O-sulfo-D-galactose PDB ? 4 SGA 3-O-sulfo-galactose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SGA C1 C1 C 0 1 N N R 2.898 6.323 4.677 -1.514 -0.312 1.751 C1 SGA 1 SGA C2 C2 C 0 1 N N R 1.920 6.975 5.666 -1.507 0.390 0.392 C2 SGA 2 SGA C3 C3 C 0 1 N N S 0.448 6.637 5.389 -0.224 0.014 -0.358 C3 SGA 3 SGA C4 C4 C 0 1 N N S 0.126 6.737 3.896 0.977 0.323 0.542 C4 SGA 4 SGA C5 C5 C 0 1 N N R 1.144 5.981 3.061 0.782 -0.376 1.889 C5 SGA 5 SGA C6 C6 C 0 1 N N N 0.896 6.184 1.577 1.993 -0.103 2.784 C6 SGA 6 SGA O1 O1 O 0 1 N Y N 4.176 6.878 4.874 -2.722 0.007 2.444 O1 SGA 7 SGA O2 O2 O 0 1 N N N 2.253 6.556 6.984 -2.645 -0.023 -0.366 O2 SGA 8 SGA O3 O3 O 0 1 N N N -0.416 7.519 6.123 -0.132 0.777 -1.562 O3 SGA 9 SGA O4 O4 O 0 1 N N N 0.129 8.095 3.489 1.075 1.734 0.742 O4 SGA 10 SGA O5 O5 O 0 1 N N N 2.459 6.490 3.331 -0.395 0.117 2.524 O5 SGA 11 SGA O6 O6 O 0 1 N N N 1.394 7.442 1.143 1.814 -0.759 4.041 O6 SGA 12 SGA S S S 0 1 N N N 0.079 8.987 6.267 0.466 -0.139 -2.619 S SGA 13 SGA O1S O1S O 0 1 N N N 0.363 9.263 7.680 0.650 0.669 -3.773 O1S SGA 14 SGA O2S O2S O 0 1 N N N -1.022 9.866 5.856 1.487 -0.874 -1.959 O2S SGA 15 SGA O3S O3S O 0 1 N N N 1.230 9.482 5.485 -0.599 -1.158 -2.994 O3S SGA 16 SGA H1 H1 H 0 1 N N N 2.940 5.224 4.865 -1.458 -1.391 1.601 H1 SGA 17 SGA H2 H2 H 0 1 N N N 2.023 8.078 5.545 -1.540 1.470 0.540 H2 SGA 18 SGA H3 H3 H 0 1 N N N 0.276 5.586 5.720 -0.239 -1.048 -0.598 H3 SGA 19 SGA H4 H4 H 0 1 N N N -0.881 6.286 3.738 1.889 -0.042 0.071 H4 SGA 20 SGA H5 H5 H 0 1 N N N 1.054 4.901 3.323 0.684 -1.450 1.729 H5 SGA 21 SGA H61 H61 H 0 1 N N N 1.314 5.345 0.972 2.092 0.969 2.944 H61 SGA 22 SGA H62 H62 H 0 1 N N N -0.181 6.057 1.319 2.894 -0.483 2.301 H62 SGA 23 SGA HO1 HO1 H 0 1 N Y N 4.780 6.474 4.262 -2.690 -0.457 3.291 HO1 SGA 24 SGA HO2 HO2 H 0 1 N Y N 1.648 6.959 7.595 -3.427 0.226 0.144 HO2 SGA 25 SGA HO4 HO4 H 0 1 N Y N -0.070 8.157 2.562 1.841 1.883 1.313 HO4 SGA 26 SGA HO6 HO6 H 0 1 N Y N 1.238 7.569 0.214 2.598 -0.562 4.573 HO6 SGA 27 SGA HOS3 HOS3 H 0 0 N N N 1.532 10.378 5.572 -0.210 -1.735 -3.665 HOS3 SGA 28 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SGA C1 C2 SING N N 1 SGA C1 O1 SING N N 2 SGA C1 O5 SING N N 3 SGA C1 H1 SING N N 4 SGA C2 C3 SING N N 5 SGA C2 O2 SING N N 6 SGA C2 H2 SING N N 7 SGA C3 C4 SING N N 8 SGA C3 O3 SING N N 9 SGA C3 H3 SING N N 10 SGA C4 C5 SING N N 11 SGA C4 O4 SING N N 12 SGA C4 H4 SING N N 13 SGA C5 C6 SING N N 14 SGA C5 O5 SING N N 15 SGA C5 H5 SING N N 16 SGA C6 O6 SING N N 17 SGA C6 H61 SING N N 18 SGA C6 H62 SING N N 19 SGA O1 HO1 SING N N 20 SGA O2 HO2 SING N N 21 SGA O3 S SING N N 22 SGA O4 HO4 SING N N 23 SGA O6 HO6 SING N N 24 SGA S O1S DOUB N N 25 SGA S O2S DOUB N N 26 SGA S O3S SING N N 27 SGA O3S HOS3 SING N N 28 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SGA SMILES ACDLabs 10.04 "O=S(=O)(OC1C(O)C(OC(O)C1O)CO)O" SGA SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O[S](O)(=O)=O)[C@H]1O" SGA SMILES CACTVS 3.341 "OC[CH]1O[CH](O)[CH](O)[CH](O[S](O)(=O)=O)[CH]1O" SGA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)O)O)OS(=O)(=O)O)O)O" SGA SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(C(O1)O)O)OS(=O)(=O)O)O)O" SGA InChI InChI 1.03 "InChI=1S/C6H12O9S/c7-1-2-3(8)5(15-16(11,12)13)4(9)6(10)14-2/h2-10H,1H2,(H,11,12,13)/t2-,3+,4-,5+,6-/m1/s1" SGA InChIKey InChI 1.03 HHRMGTRTCHNCRO-FDROIEKHSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SGA "SYSTEMATIC NAME" ACDLabs 10.04 3-O-sulfo-beta-D-galactopyranose SGA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4S,5S,6R)-2,3,5-trihydroxy-6-(hydroxymethyl)oxan-4-yl] hydrogen sulfate" SGA "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DGalp[3S]b SGA "COMMON NAME" GMML 1.0 3-sulfo-b-D-galactopyranose SGA "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-Galp3SO3 # _pdbx_chem_comp_related.comp_id SGA _pdbx_chem_comp_related.related_comp_id GAL _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 SGA C1 GAL C1 "Carbohydrate core" 2 SGA C2 GAL C2 "Carbohydrate core" 3 SGA C3 GAL C3 "Carbohydrate core" 4 SGA C4 GAL C4 "Carbohydrate core" 5 SGA C5 GAL C5 "Carbohydrate core" 6 SGA C6 GAL C6 "Carbohydrate core" 7 SGA O1 GAL O1 "Carbohydrate core" 8 SGA O2 GAL O2 "Carbohydrate core" 9 SGA O3 GAL O3 "Carbohydrate core" 10 SGA O4 GAL O4 "Carbohydrate core" 11 SGA O5 GAL O5 "Carbohydrate core" 12 SGA O6 GAL O6 "Carbohydrate core" 13 SGA H1 GAL H1 "Carbohydrate core" 14 SGA H2 GAL H2 "Carbohydrate core" 15 SGA H3 GAL H3 "Carbohydrate core" 16 SGA H4 GAL H4 "Carbohydrate core" 17 SGA H5 GAL H5 "Carbohydrate core" 18 SGA H61 GAL H61 "Carbohydrate core" 19 SGA H62 GAL H62 "Carbohydrate core" 20 SGA HO1 GAL HO1 "Carbohydrate core" 21 SGA HO2 GAL HO2 "Carbohydrate core" 22 SGA HO4 GAL HO4 "Carbohydrate core" 23 SGA HO6 GAL HO6 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support SGA "CARBOHYDRATE ISOMER" D PDB ? SGA "CARBOHYDRATE RING" pyranose PDB ? SGA "CARBOHYDRATE ANOMER" beta PDB ? SGA "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SGA "Create component" 1999-07-08 RCSB SGA "Modify descriptor" 2011-06-04 RCSB SGA "Other modification" 2020-07-03 RCSB SGA "Modify parent residue" 2020-07-17 RCSB SGA "Modify name" 2020-07-17 RCSB SGA "Modify synonyms" 2020-07-17 RCSB SGA "Modify linking type" 2020-07-17 RCSB SGA "Modify leaving atom flag" 2020-07-17 RCSB ##