data_SGJ # _chem_comp.id SGJ _chem_comp.name 1,4-dideoxy-4-thio-nojirimycin _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H13 N O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-12-15 _chem_comp.pdbx_modified_date 2019-01-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 179.237 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SGJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6F9H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SGJ O1 O1 O 0 1 N N N 13.316 14.163 13.515 -3.302 -1.323 0.217 O1 SGJ 1 SGJ C1 C1 C 0 1 N N N 13.427 14.055 12.093 -2.462 -0.323 -0.363 C1 SGJ 2 SGJ C2 C2 C 0 1 N N R 12.298 13.211 11.508 -1.040 -0.474 0.179 C2 SGJ 3 SGJ N1 N1 N 0 1 N N N 12.595 11.779 11.695 -0.480 -1.757 -0.266 N1 SGJ 4 SGJ C3 C3 C 0 1 N N N 11.567 10.907 11.112 0.872 -1.960 0.268 C3 SGJ 5 SGJ C4 C4 C 0 1 N N S 10.225 11.150 11.786 1.799 -0.859 -0.252 C4 SGJ 6 SGJ O2 O2 O 0 1 N N N 9.231 10.302 11.220 3.110 -1.046 0.284 O2 SGJ 7 SGJ C5 C5 C 0 1 N N R 9.816 12.607 11.598 1.257 0.506 0.185 C5 SGJ 8 SGJ O3 O3 O 0 1 N N N 8.614 12.858 12.330 2.087 1.541 -0.346 O3 SGJ 9 SGJ C6 C6 C 0 1 N N R 10.913 13.557 12.065 -0.170 0.672 -0.344 C6 SGJ 10 SGJ S1 S1 S 0 1 N N N 10.466 15.258 11.547 -0.847 2.255 0.228 S1 SGJ 11 SGJ H1 H1 H 0 1 N N N 14.030 14.692 13.850 -4.221 -1.287 -0.082 H1 SGJ 12 SGJ H2 H2 H 0 1 N N N 14.390 13.586 11.844 -2.453 -0.440 -1.446 H2 SGJ 13 SGJ H3 H3 H 0 1 N N N 13.385 15.062 11.653 -2.845 0.665 -0.108 H3 SGJ 14 SGJ H4 H4 H 0 1 N N N 12.271 13.410 10.427 -1.061 -0.445 1.268 H4 SGJ 15 SGJ H5 H5 H 0 1 N N N 12.657 11.590 12.675 -0.485 -1.824 -1.273 H5 SGJ 16 SGJ H7 H7 H 0 1 N N N 11.477 11.121 10.037 0.842 -1.925 1.357 H7 SGJ 17 SGJ H8 H8 H 0 1 N N N 11.859 9.856 11.254 1.247 -2.932 -0.053 H8 SGJ 18 SGJ H9 H9 H 0 1 N N N 10.327 10.948 12.862 1.841 -0.902 -1.340 H9 SGJ 19 SGJ H10 H10 H 0 1 N N N 8.398 10.461 11.647 3.514 -1.892 0.049 H10 SGJ 20 SGJ H11 H11 H 0 1 N N N 9.639 12.782 10.526 1.252 0.564 1.273 H11 SGJ 21 SGJ H12 H12 H 0 1 N N N 8.356 13.765 12.215 3.008 1.494 -0.056 H12 SGJ 22 SGJ H13 H13 H 0 1 N N N 10.950 13.569 13.164 -0.159 0.652 -1.434 H13 SGJ 23 SGJ H14 H14 H 0 1 N N N 9.291 15.404 12.084 0.003 3.155 -0.298 H14 SGJ 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SGJ C3 N1 SING N N 1 SGJ C3 C4 SING N N 2 SGJ O2 C4 SING N N 3 SGJ C2 N1 SING N N 4 SGJ C2 C6 SING N N 5 SGJ C2 C1 SING N N 6 SGJ S1 C6 SING N N 7 SGJ C5 C4 SING N N 8 SGJ C5 C6 SING N N 9 SGJ C5 O3 SING N N 10 SGJ C1 O1 SING N N 11 SGJ O1 H1 SING N N 12 SGJ C1 H2 SING N N 13 SGJ C1 H3 SING N N 14 SGJ C2 H4 SING N N 15 SGJ N1 H5 SING N N 16 SGJ C3 H7 SING N N 17 SGJ C3 H8 SING N N 18 SGJ C4 H9 SING N N 19 SGJ O2 H10 SING N N 20 SGJ C5 H11 SING N N 21 SGJ O3 H12 SING N N 22 SGJ C6 H13 SING N N 23 SGJ S1 H14 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SGJ InChI InChI 1.03 "InChI=1S/C6H13NO3S/c8-2-3-6(11)5(10)4(9)1-7-3/h3-11H,1-2H2/t3-,4+,5-,6-/m1/s1" SGJ InChIKey InChI 1.03 NSHHSUUKQHDEOL-JGWLITMVSA-N SGJ SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1NC[C@H](O)[C@@H](O)[C@@H]1S" SGJ SMILES CACTVS 3.385 "OC[CH]1NC[CH](O)[CH](O)[CH]1S" SGJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1[C@@H]([C@H]([C@@H]([C@H](N1)CO)S)O)O" SGJ SMILES "OpenEye OEToolkits" 2.0.6 "C1C(C(C(C(N1)CO)S)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SGJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(3~{S},4~{R},5~{R},6~{R})-6-(hydroxymethyl)-5-sulfanyl-piperidine-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SGJ "Create component" 2017-12-15 EBI SGJ "Initial release" 2019-01-30 RCSB #