data_SGN
#

_chem_comp.id                                   SGN
_chem_comp.name                                 "2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H13 N O11 S2"
_chem_comp.mon_nstd_parent_comp_id              PA1
_chem_comp.pdbx_synonyms                        
;N,O6-DISULFO-GLUCOSAMINE; 6-O-sulfo-N-sulfo-alpha-D-glucosamine; 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucose;
2-deoxy-6-O-sulfo-2-(sulfoamino)-D-glucose; 2-deoxy-6-O-sulfo-2-(sulfoamino)-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       339.298
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SGN
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1BFB
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  SGN  "N,O6-DISULFO-GLUCOSAMINE"                          PDB  ?  
2  SGN  6-O-sulfo-N-sulfo-alpha-D-glucosamine               PDB  ?  
3  SGN  "2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucose"  PDB  ?  
4  SGN  "2-deoxy-6-O-sulfo-2-(sulfoamino)-D-glucose"        PDB  ?  
5  SGN  "2-deoxy-6-O-sulfo-2-(sulfoamino)-glucose"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SGN  C1    C1    C  0  1  N  N  S  -4.039   1.900  54.707   1.114   0.508  -0.786  C1    SGN   1  
SGN  C2    C2    C  0  1  N  N  R  -2.975   2.992  54.913   0.056   0.033  -1.785  C2    SGN   2  
SGN  C3    C3    C  0  1  N  N  R  -2.089   3.126  53.683  -1.330   0.437  -1.276  C3    SGN   3  
SGN  C4    C4    C  0  1  N  N  S  -1.479   1.780  53.270  -1.499  -0.090   0.152  C4    SGN   4  
SGN  C5    C5    C  0  1  N  N  R  -2.675   0.849  53.016  -0.325   0.394   1.005  C5    SGN   5  
SGN  C6    C6    C  0  1  N  N  N  -2.305  -0.506  52.459  -0.503  -0.100   2.442  C6    SGN   6  
SGN  N2    N     N  0  1  N  N  N  -3.636   4.280  55.109   0.300   0.654  -3.089  N2    SGN   7  
SGN  O1    O1    O  0  1  N  Y  N  -5.172   2.314  53.931   1.024   1.927  -0.638  O1    SGN   8  
SGN  O3    O3    O  0  1  N  N  N  -1.059   4.018  53.988  -2.337  -0.126  -2.118  O3    SGN   9  
SGN  O4    O4    O  0  1  N  N  N  -0.698   1.991  52.063  -2.724   0.399   0.702  O4    SGN  10  
SGN  O5    O5    O  0  1  N  N  N  -3.435   0.686  54.234   0.897  -0.114   0.477  O5    SGN  11  
SGN  O6    O6    O  0  1  N  N  N  -2.311  -1.427  53.544   0.588   0.356   3.243  O6    SGN  12  
SGN  S1    S1    S  0  1  N  N  N  -3.594   5.097  56.697   0.589  -0.293  -4.416  S1    SGN  13  
SGN  O1S   O1S   O  0  1  N  N  N  -4.589   4.513  57.538   0.607   0.592  -5.527  O1S   SGN  14  
SGN  O2S   O2S   O  0  1  N  N  N  -3.858   6.495  56.527   1.646  -1.167  -4.044  O2S   SGN  15  
SGN  O3S   O3S   O  0  1  N  N  N  -2.310   4.935  57.320  -0.630  -1.181  -4.616  O3S   SGN  16  
SGN  S2    S2    S  0  1  N  N  N  -0.766  -1.852  54.290   0.350  -0.167   4.652  S2    SGN  17  
SGN  O4S   O4S   O  0  1  N  N  N  -0.230  -2.922  53.489   1.088   0.689   5.512  O4S   SGN  18  
SGN  O5S   O5S   O  0  1  N  N  N  -0.961  -2.294  55.649  -1.045  -0.417   4.740  O5S   SGN  19  
SGN  O6S   O6S   O  0  1  N  N  N   0.111  -0.705  54.296   1.021  -1.530   4.750  O6S   SGN  20  
SGN  H1    H1    H  0  1  N  N  N  -4.478   1.691  55.710   2.105   0.245  -1.155  H1    SGN  21  
SGN  H2    H2    H  0  1  N  N  N  -2.359   2.707  55.798   0.108  -1.051  -1.882  H2    SGN  22  
SGN  H3    H3    H  0  1  N  N  N  -2.709   3.492  52.832  -1.418   1.523  -1.278  H3    SGN  23  
SGN  H4    H4    H  0  1  N  N  N  -0.803   1.338  54.039  -1.515  -1.180   0.139  H4    SGN  24  
SGN  H5    H5    H  0  1  N  N  N  -3.287   1.346  52.228  -0.297   1.484   0.998  H5    SGN  25  
SGN  H61   H61   H  0  1  N  N  N  -2.960  -0.823  51.614  -1.438   0.287   2.847  H61   SGN  26  
SGN  H62   H62   H  0  1  N  N  N  -1.340  -0.498  51.899  -0.529  -1.190   2.451  H62   SGN  27  
SGN  HN21  HN    H  0  0  N  N  N  -4.611   4.182  54.827   0.291   1.620  -3.176  HN21  SGN  28  
SGN  HO1   HO1   H  0  1  N  Y  N  -5.829   1.639  53.803   1.707   2.186  -0.004  HO1   SGN  29  
SGN  HO3   HO3   H  0  1  N  Y  N  -0.505   4.101  53.220  -3.190   0.143  -1.753  HO3   SGN  30  
SGN  HO4   HO4   H  0  1  N  Y  N  -0.320   1.157  51.807  -2.786   0.049   1.602  HO4   SGN  31  
SGN  HOS3  HOS3  H  0  0  N  N  N  -2.287   5.369  58.164  -0.453  -1.730  -5.392  HOS3  SGN  32  
SGN  HOS6  HOS6  H  0  0  N  N  N   0.941  -0.933  54.697   0.864  -1.854   5.647  HOS6  SGN  33  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SGN  C1   C2    SING  N  N   1  
SGN  C1   O1    SING  N  N   2  
SGN  C1   O5    SING  N  N   3  
SGN  C1   H1    SING  N  N   4  
SGN  C2   C3    SING  N  N   5  
SGN  C2   N2    SING  N  N   6  
SGN  C2   H2    SING  N  N   7  
SGN  C3   C4    SING  N  N   8  
SGN  C3   O3    SING  N  N   9  
SGN  C3   H3    SING  N  N  10  
SGN  C4   C5    SING  N  N  11  
SGN  C4   O4    SING  N  N  12  
SGN  C4   H4    SING  N  N  13  
SGN  C5   C6    SING  N  N  14  
SGN  C5   O5    SING  N  N  15  
SGN  C5   H5    SING  N  N  16  
SGN  C6   O6    SING  N  N  17  
SGN  C6   H61   SING  N  N  18  
SGN  C6   H62   SING  N  N  19  
SGN  N2   S1    SING  N  N  20  
SGN  N2   HN21  SING  N  N  21  
SGN  O1   HO1   SING  N  N  22  
SGN  O3   HO3   SING  N  N  23  
SGN  O4   HO4   SING  N  N  24  
SGN  O6   S2    SING  N  N  25  
SGN  S1   O1S   DOUB  N  N  26  
SGN  S1   O2S   DOUB  N  N  27  
SGN  S1   O3S   SING  N  N  28  
SGN  O3S  HOS3  SING  N  N  29  
SGN  S2   O4S   DOUB  N  N  30  
SGN  S2   O5S   DOUB  N  N  31  
SGN  S2   O6S   SING  N  N  32  
SGN  O6S  HOS6  SING  N  N  33  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SGN  SMILES            ACDLabs               10.04  "O=S(=O)(O)OCC1OC(O)C(NS(=O)(=O)O)C(O)C1O"  
SGN  SMILES_CANONICAL  CACTVS                3.341  "O[C@H]1O[C@H](CO[S](O)(=O)=O)[C@@H](O)[C@H](O)[C@H]1N[S](O)(=O)=O"  
SGN  SMILES            CACTVS                3.341  "O[CH]1O[CH](CO[S](O)(=O)=O)[CH](O)[CH](O)[CH]1N[S](O)(=O)=O"  
SGN  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)NS(=O)(=O)O)O)O)OS(=O)(=O)O"  
SGN  SMILES            "OpenEye OEToolkits"  1.5.0  "C(C1C(C(C(C(O1)O)NS(=O)(=O)O)O)O)OS(=O)(=O)O"  
SGN  InChI             InChI                 1.03   "InChI=1S/C6H13NO11S2/c8-4-2(1-17-20(14,15)16)18-6(10)3(5(4)9)7-19(11,12)13/h2-10H,1H2,(H,11,12,13)(H,14,15,16)/t2-,3-,4-,5-,6+/m1/s1"  
SGN  InChIKey          InChI                 1.03   DQTRACMFIGDHSN-UKFBFLRUSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SGN  "SYSTEMATIC NAME"                      ACDLabs               10.04  "2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose"  
SGN  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.5.0  "[(2S,3R,4R,5S,6R)-2,4,5-trihydroxy-6-(sulfooxymethyl)oxan-3-yl]sulfamic acid"  
SGN  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DGlcpNS[6S]a  
SGN  "COMMON NAME"                          GMML                  1.0    N-sulfo-6-sulfo-a-D-glucopyranose  
SGN  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    a-D-GlcpNSO36SO3  
#
_pdbx_chem_comp_related.comp_id            SGN
_pdbx_chem_comp_related.related_comp_id    PA1
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  SGN  C1    PA1  C1    "Carbohydrate core"  
 2  SGN  C2    PA1  C2    "Carbohydrate core"  
 3  SGN  C3    PA1  C3    "Carbohydrate core"  
 4  SGN  C4    PA1  C4    "Carbohydrate core"  
 5  SGN  C5    PA1  C5    "Carbohydrate core"  
 6  SGN  C6    PA1  C6    "Carbohydrate core"  
 7  SGN  N2    PA1  N2    "Carbohydrate core"  
 8  SGN  O1    PA1  O1    "Carbohydrate core"  
 9  SGN  O3    PA1  O3    "Carbohydrate core"  
10  SGN  O4    PA1  O4    "Carbohydrate core"  
11  SGN  O5    PA1  O5    "Carbohydrate core"  
12  SGN  O6    PA1  O6    "Carbohydrate core"  
13  SGN  H1    PA1  H1    "Carbohydrate core"  
14  SGN  H2    PA1  H2    "Carbohydrate core"  
15  SGN  H3    PA1  H3    "Carbohydrate core"  
16  SGN  H4    PA1  H4    "Carbohydrate core"  
17  SGN  H5    PA1  H5    "Carbohydrate core"  
18  SGN  H61   PA1  H61   "Carbohydrate core"  
19  SGN  H62   PA1  H62   "Carbohydrate core"  
20  SGN  HN21  PA1  HN21  "Carbohydrate core"  
21  SGN  HO1   PA1  HO1   "Carbohydrate core"  
22  SGN  HO3   PA1  HO3   "Carbohydrate core"  
23  SGN  HO4   PA1  HO4   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
SGN  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
SGN  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
SGN  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
SGN  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SGN  "Create component"          1999-07-08  EBI   
SGN  "Modify descriptor"         2011-06-04  RCSB  
SGN  "Other modification"        2020-07-03  RCSB  
SGN  "Modify parent residue"     2020-07-17  RCSB  
SGN  "Modify name"               2020-07-17  RCSB  
SGN  "Modify synonyms"           2020-07-17  RCSB  
SGN  "Modify linking type"       2020-07-17  RCSB  
SGN  "Modify atom id"            2020-07-17  RCSB  
SGN  "Modify component atom id"  2020-07-17  RCSB  
SGN  "Modify leaving atom flag"  2020-07-17  RCSB  
##