data_SH5 # _chem_comp.id SH5 _chem_comp.name "5'-O-[(S)-[(8-bromooctanoyl)oxy](hydroxy)phosphoryl]adenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H27 Br N5 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-04-24 _chem_comp.pdbx_modified_date 2017-03-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 552.313 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SH5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4PDU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SH5 BRA BR1 BR 0 0 N N N -19.223 -1.342 40.426 -12.026 -1.245 -0.123 BRA SH5 1 SH5 CAB C1 C 0 1 N N N -18.294 0.297 40.955 -10.314 -1.402 0.829 CAB SH5 2 SH5 CAC C2 C 0 1 N N N -17.564 0.955 39.784 -9.230 -0.645 0.058 CAC SH5 3 SH5 CAD C3 C 0 1 N N N -18.572 1.380 38.714 -7.897 -0.767 0.800 CAD SH5 4 SH5 CAE C4 C 0 1 N N N -17.897 2.268 37.672 -6.814 -0.010 0.029 CAE SH5 5 SH5 CAF C5 C 0 1 N N N -18.637 2.178 36.339 -5.481 -0.131 0.770 CAF SH5 6 SH5 CAG C6 C 0 1 N N N -17.831 2.867 35.236 -4.398 0.626 -0.001 CAG SH5 7 SH5 CAH C7 C 0 1 N N N -18.597 2.734 33.920 -3.065 0.504 0.741 CAH SH5 8 SH5 CAI C8 C 0 1 N N N -17.730 2.935 32.664 -1.998 1.249 -0.018 CAI SH5 9 SH5 OAJ O1 O 0 1 N N N -16.547 3.285 32.698 -2.275 1.819 -1.047 OAJ SH5 10 SH5 OAK O2 O 0 1 N N N -18.414 2.670 31.517 -0.739 1.280 0.448 OAK SH5 11 SH5 PAL P1 P 0 1 N N N -17.884 3.134 30.069 0.342 2.097 -0.421 PAL SH5 12 SH5 OAN O3 O 0 1 N N N -17.499 4.614 30.284 -0.044 3.660 -0.425 OAN SH5 13 SH5 OAM O4 O 0 1 N N N -18.916 2.920 29.042 0.348 1.586 -1.809 OAM SH5 14 SH5 "O5'" O5 O 0 1 N N N -16.523 2.395 29.744 1.804 1.908 0.227 "O5'" SH5 15 SH5 "C5'" C9 C 0 1 N N N -16.564 1.043 29.332 2.994 2.424 -0.373 "C5'" SH5 16 SH5 "C4'" C10 C 0 1 N N R -15.219 0.652 28.758 4.200 2.067 0.498 "C4'" SH5 17 SH5 "O4'" O6 O 0 1 N N N -14.176 0.824 29.741 4.401 0.644 0.495 "O4'" SH5 18 SH5 "C3'" C11 C 0 1 N N S -15.229 -0.832 28.433 5.474 2.711 -0.083 "C3'" SH5 19 SH5 "O3'" O7 O 0 1 N N N -15.867 -1.072 27.152 6.061 3.603 0.867 "O3'" SH5 20 SH5 "C2'" C12 C 0 1 N N R -13.758 -1.083 28.380 6.414 1.511 -0.356 "C2'" SH5 21 SH5 "O2'" O8 O 0 1 N N N -13.174 -0.451 27.240 7.759 1.823 0.014 "O2'" SH5 22 SH5 "C1'" C13 C 0 1 N N R -13.291 -0.332 29.623 5.825 0.419 0.572 "C1'" SH5 23 SH5 N9 N1 N 0 1 Y N N -13.361 -1.142 30.845 6.164 -0.917 0.076 N9 SH5 24 SH5 C8 C14 C 0 1 Y N N -13.876 -2.348 31.119 5.385 -1.703 -0.720 C8 SH5 25 SH5 N7 N2 N 0 1 Y N N -13.661 -2.613 32.406 5.995 -2.826 -0.970 N7 SH5 26 SH5 C5 C15 C 0 1 Y N N -13.001 -1.569 32.925 7.200 -2.831 -0.351 C5 SH5 27 SH5 C4 C16 C 0 1 Y N N -12.821 -0.659 31.956 7.325 -1.605 0.323 C4 SH5 28 SH5 N3 N3 N 0 1 Y N N -12.186 0.511 32.189 8.434 -1.356 1.012 N3 SH5 29 SH5 C2 C17 C 0 1 Y N N -11.709 0.777 33.467 9.406 -2.243 1.062 C2 SH5 30 SH5 N1 N4 N 0 1 Y N N -11.903 -0.187 34.457 9.335 -3.408 0.443 N1 SH5 31 SH5 C6 C18 C 0 1 Y N N -12.540 -1.327 34.155 8.262 -3.747 -0.264 C6 SH5 32 SH5 N6 N5 N 0 1 N N N -12.736 -2.267 35.079 8.198 -4.969 -0.911 N6 SH5 33 SH5 H1 H1 H 0 1 N N N -17.560 0.051 41.736 -10.413 -0.976 1.828 H1 SH5 34 SH5 H2 H2 H 0 1 N N N -19.032 1.008 41.356 -10.036 -2.453 0.908 H2 SH5 35 SH5 H3 H3 H 0 1 N N N -16.851 0.238 39.350 -9.130 -1.070 -0.940 H3 SH5 36 SH5 H4 H4 H 0 1 N N N -17.020 1.840 40.145 -9.507 0.406 -0.020 H4 SH5 37 SH5 H5 H5 H 0 1 N N N -19.392 1.938 39.189 -7.997 -0.341 1.798 H5 SH5 38 SH5 H6 H6 H 0 1 N N N -18.976 0.484 38.220 -7.620 -1.818 0.879 H6 SH5 39 SH5 H7 H7 H 0 1 N N N -16.857 1.938 37.533 -6.714 -0.435 -0.970 H7 SH5 40 SH5 H8 H8 H 0 1 N N N -17.907 3.311 38.023 -7.091 1.041 -0.050 H8 SH5 41 SH5 H9 H9 H 0 1 N N N -19.616 2.670 36.434 -5.581 0.294 1.769 H9 SH5 42 SH5 H10 H10 H 0 1 N N N -18.782 1.120 36.075 -5.204 -1.183 0.849 H10 SH5 43 SH5 H11 H11 H 0 1 N N N -16.846 2.387 35.142 -4.298 0.200 -0.999 H11 SH5 44 SH5 H12 H12 H 0 1 N N N -17.699 3.931 35.482 -4.675 1.677 -0.079 H12 SH5 45 SH5 H13 H13 H 0 1 N N N -19.399 3.487 33.910 -3.164 0.929 1.740 H13 SH5 46 SH5 H14 H14 H 0 1 N N N -19.038 1.727 33.878 -2.788 -0.547 0.820 H14 SH5 47 SH5 H15 H15 H 0 1 N N N -18.008 5.162 29.699 -0.067 4.062 0.454 H15 SH5 48 SH5 H16 H16 H 0 1 N N N -17.342 0.917 28.564 3.120 1.989 -1.364 H16 SH5 49 SH5 H17 H17 H 0 1 N N N -16.794 0.403 30.196 2.916 3.508 -0.459 H17 SH5 50 SH5 H18 H18 H 0 1 N N N -15.010 1.236 27.850 4.037 2.417 1.518 H18 SH5 51 SH5 H19 H19 H 0 1 N N N -15.703 -1.407 29.242 5.247 3.237 -1.010 H19 SH5 52 SH5 H20 H20 H 0 1 N N N -16.799 -0.902 27.225 6.867 4.037 0.553 H20 SH5 53 SH5 H21 H21 H 0 1 N N N -13.521 -2.155 28.445 6.360 1.205 -1.400 H21 SH5 54 SH5 H22 H22 H 0 1 N N N -12.240 -0.623 27.226 8.141 2.562 -0.479 H22 SH5 55 SH5 H23 H23 H 0 1 N N N -12.257 0.008 29.465 6.180 0.551 1.594 H23 SH5 56 SH5 H24 H24 H 0 1 N N N -14.380 -2.995 30.416 4.407 -1.434 -1.089 H24 SH5 57 SH5 H25 H25 H 0 1 N N N -11.202 1.705 33.688 10.294 -2.010 1.630 H25 SH5 58 SH5 H26 H26 H 0 1 N N N -12.346 -1.966 35.949 7.413 -5.202 -1.432 H26 SH5 59 SH5 H27 H27 H 0 1 N N N -13.717 -2.425 35.191 8.938 -5.593 -0.843 H27 SH5 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SH5 "O3'" "C3'" SING N N 1 SH5 "O2'" "C2'" SING N N 2 SH5 "C2'" "C3'" SING N N 3 SH5 "C2'" "C1'" SING N N 4 SH5 "C3'" "C4'" SING N N 5 SH5 "C4'" "C5'" SING N N 6 SH5 "C4'" "O4'" SING N N 7 SH5 OAM PAL DOUB N N 8 SH5 "C5'" "O5'" SING N N 9 SH5 "C1'" "O4'" SING N N 10 SH5 "C1'" N9 SING N N 11 SH5 "O5'" PAL SING N N 12 SH5 PAL OAN SING N N 13 SH5 PAL OAK SING N N 14 SH5 N9 C8 SING Y N 15 SH5 N9 C4 SING Y N 16 SH5 C8 N7 DOUB Y N 17 SH5 OAK CAI SING N N 18 SH5 C4 N3 DOUB Y N 19 SH5 C4 C5 SING Y N 20 SH5 N3 C2 SING Y N 21 SH5 N7 C5 SING Y N 22 SH5 CAI OAJ DOUB N N 23 SH5 CAI CAH SING N N 24 SH5 C5 C6 DOUB Y N 25 SH5 C2 N1 DOUB Y N 26 SH5 CAH CAG SING N N 27 SH5 C6 N1 SING Y N 28 SH5 C6 N6 SING N N 29 SH5 CAG CAF SING N N 30 SH5 CAF CAE SING N N 31 SH5 CAE CAD SING N N 32 SH5 CAD CAC SING N N 33 SH5 CAC CAB SING N N 34 SH5 BRA CAB SING N N 35 SH5 CAB H1 SING N N 36 SH5 CAB H2 SING N N 37 SH5 CAC H3 SING N N 38 SH5 CAC H4 SING N N 39 SH5 CAD H5 SING N N 40 SH5 CAD H6 SING N N 41 SH5 CAE H7 SING N N 42 SH5 CAE H8 SING N N 43 SH5 CAF H9 SING N N 44 SH5 CAF H10 SING N N 45 SH5 CAG H11 SING N N 46 SH5 CAG H12 SING N N 47 SH5 CAH H13 SING N N 48 SH5 CAH H14 SING N N 49 SH5 OAN H15 SING N N 50 SH5 "C5'" H16 SING N N 51 SH5 "C5'" H17 SING N N 52 SH5 "C4'" H18 SING N N 53 SH5 "C3'" H19 SING N N 54 SH5 "O3'" H20 SING N N 55 SH5 "C2'" H21 SING N N 56 SH5 "O2'" H22 SING N N 57 SH5 "C1'" H23 SING N N 58 SH5 C8 H24 SING N N 59 SH5 C2 H25 SING N N 60 SH5 N6 H26 SING N N 61 SH5 N6 H27 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SH5 SMILES ACDLabs 12.01 "BrCCCCCCCC(=O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O" SH5 InChI InChI 1.03 "InChI=1S/C18H27BrN5O8P/c19-7-5-3-1-2-4-6-12(25)32-33(28,29)30-8-11-14(26)15(27)18(31-11)24-10-23-13-16(20)21-9-22-17(13)24/h9-11,14-15,18,26-27H,1-8H2,(H,28,29)(H2,20,21,22)/t11-,14-,15-,18-/m1/s1" SH5 InChIKey InChI 1.03 UBTOIYSSWKLJCN-XKLVTHTNSA-N SH5 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)OC(=O)CCCCCCCBr)[C@@H](O)[C@H]3O" SH5 SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)OC(=O)CCCCCCCBr)[CH](O)[CH]3O" SH5 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OC(=O)CCCCCCCBr)O)O)N" SH5 SMILES "OpenEye OEToolkits" 1.9.2 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OC(=O)CCCCCCCBr)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SH5 "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-[(S)-[(8-bromooctanoyl)oxy](hydroxy)phosphoryl]adenosine" SH5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] 8-bromanyloctanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SH5 "Create component" 2014-04-24 RCSB SH5 "Modify descriptor" 2014-09-05 RCSB SH5 "Initial release" 2017-03-15 RCSB #