data_SI7 # _chem_comp.id SI7 _chem_comp.name "[N-(2-{bis[2-(pyridin-2-yl-kappaN)ethyl]amino-kappaN}ethyl)-5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentanamide](hydroxy)copper" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H36 Cu N6 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-07-06 _chem_comp.pdbx_modified_date 2017-11-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 576.213 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SI7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5WBD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SI7 CU1 CU1 CU 0 0 N N N 24.164 25.396 -17.726 24.164 25.396 -17.726 CU1 SI7 1 SI7 N6 N1 N 0 1 Y N N 25.833 24.431 -17.280 25.833 24.431 -17.280 N6 SI7 2 SI7 C23 C1 C 0 1 Y N N 26.320 23.315 -18.012 26.320 23.315 -18.012 C23 SI7 3 SI7 C24 C2 C 0 1 Y N N 27.502 22.678 -17.633 27.502 22.678 -17.633 C24 SI7 4 SI7 C25 C3 C 0 1 Y N N 28.234 23.123 -16.524 28.234 23.123 -16.524 C25 SI7 5 SI7 C26 C4 C 0 1 Y N N 27.781 24.215 -15.780 27.781 24.215 -15.780 C26 SI7 6 SI7 C22 C5 C 0 1 Y N N 26.603 24.851 -16.157 26.603 24.851 -16.157 C22 SI7 7 SI7 C21 C6 C 0 1 N N N 26.052 26.032 -15.401 26.052 26.032 -15.401 C21 SI7 8 SI7 C20 C7 C 0 1 N N N 24.652 25.716 -14.914 24.652 25.716 -14.914 C20 SI7 9 SI7 N4 N2 N 0 1 N N N 23.594 25.871 -15.872 23.594 25.871 -15.872 N4 SI7 10 SI7 N5 N3 N 0 1 Y N N 22.585 26.278 -18.528 22.585 26.278 -18.528 N5 SI7 11 SI7 C16 C8 C 0 1 Y N N 22.135 25.747 -19.770 22.135 25.747 -19.770 C16 SI7 12 SI7 C17 C9 C 0 1 Y N N 21.038 26.279 -20.452 21.038 26.279 -20.452 C17 SI7 13 SI7 C18 C10 C 0 1 Y N N 20.353 27.366 -19.901 20.353 27.366 -19.901 C18 SI7 14 SI7 C19 C11 C 0 1 Y N N 20.767 27.905 -18.680 20.767 27.905 -18.680 C19 SI7 15 SI7 C15 C12 C 0 1 Y N N 21.862 27.377 -17.998 21.862 27.377 -17.998 C15 SI7 16 SI7 C14 C13 C 0 1 N N N 22.293 27.991 -16.684 22.293 27.991 -16.684 C14 SI7 17 SI7 C13 C14 C 0 1 N N N 23.055 27.186 -15.641 23.055 27.186 -15.641 C13 SI7 18 SI7 C12 C15 C 0 1 N N N 22.575 24.889 -15.575 22.575 24.889 -15.575 C12 SI7 19 SI7 C11 C16 C 0 1 N N N 22.113 24.796 -14.119 22.113 24.796 -14.119 C11 SI7 20 SI7 N3 N4 N 0 1 N N N 20.799 24.319 -13.842 20.799 24.319 -13.842 N3 SI7 21 SI7 C10 C17 C 0 1 N N N 19.627 24.894 -14.117 19.627 24.894 -14.117 C10 SI7 22 SI7 O2 O1 O 0 1 N N N 19.615 26.129 -14.745 19.615 26.129 -14.745 O2 SI7 23 SI7 C9 C18 C 0 1 N N N 18.319 24.343 -13.609 18.319 24.343 -13.609 C9 SI7 24 SI7 C8 C19 C 0 1 N N N 17.433 25.387 -12.979 17.433 25.387 -12.979 C8 SI7 25 SI7 C7 C20 C 0 1 N N N 18.044 26.046 -11.751 18.044 26.046 -11.751 C7 SI7 26 SI7 C6 C21 C 0 1 N N N 17.266 27.202 -11.152 17.266 27.202 -11.152 C6 SI7 27 SI7 C5 C22 C 0 1 N N S 17.904 27.775 -9.898 17.904 27.775 -9.898 C5 SI7 28 SI7 C4 C23 C 0 1 N N S 17.324 29.128 -9.491 17.324 29.128 -9.491 C4 SI7 29 SI7 N2 N5 N 0 1 N N N 15.898 29.214 -9.485 15.898 29.214 -9.485 N2 SI7 30 SI7 S1 S1 S 0 1 N N N 17.761 26.783 -8.434 17.761 26.783 -8.434 S1 SI7 31 SI7 C3 C24 C 0 1 N N N 18.438 28.147 -7.537 18.438 28.147 -7.537 C3 SI7 32 SI7 C2 C25 C 0 1 N N R 17.639 29.351 -8.010 17.639 29.351 -8.010 C2 SI7 33 SI7 N1 N6 N 0 1 N N N 16.382 29.548 -7.399 16.382 29.548 -7.399 N1 SI7 34 SI7 C1 C26 C 0 1 N N N 15.291 29.407 -8.238 15.291 29.407 -8.238 C1 SI7 35 SI7 O1 O2 O 0 1 N N N 13.971 29.429 -8.004 13.971 29.429 -8.004 O1 SI7 36 SI7 O3 O3 O 0 1 N N N 23.222 23.161 -18.267 23.222 23.161 -18.267 O3 SI7 37 SI7 H1 H1 H 0 1 N N N 25.770 22.956 -18.870 25.770 22.956 -18.870 H1 SI7 38 SI7 H2 H2 H 0 1 N N N 27.857 21.831 -18.201 27.857 21.831 -18.201 H2 SI7 39 SI7 H3 H3 H 0 1 N N N 29.149 22.621 -16.244 29.149 22.622 -16.244 H3 SI7 40 SI7 H4 H4 H 0 1 N N N 28.339 24.561 -14.922 28.339 24.561 -14.922 H4 SI7 41 SI7 H5 H5 H 0 1 N N N 26.699 26.249 -14.538 26.699 26.249 -14.538 H5 SI7 42 SI7 H6 H6 H 0 1 N N N 26.020 26.909 -16.065 26.020 26.909 -16.065 H6 SI7 43 SI7 H7 H7 H 0 1 N N N 24.435 26.381 -14.065 24.435 26.381 -14.065 H7 SI7 44 SI7 H8 H8 H 0 1 N N N 24.644 24.670 -14.573 24.644 24.670 -14.573 H8 SI7 45 SI7 H9 H9 H 0 1 N N N 22.659 24.906 -20.199 22.659 24.906 -20.199 H9 SI7 46 SI7 H10 H10 H 0 1 N N N 20.723 25.855 -21.394 20.723 25.855 -21.394 H10 SI7 47 SI7 H11 H11 H 0 1 N N N 19.505 27.789 -20.419 19.505 27.789 -20.419 H11 SI7 48 SI7 H12 H12 H 0 1 N N N 20.231 28.743 -18.259 20.231 28.743 -18.259 H12 SI7 49 SI7 H13 H13 H 0 1 N N N 22.930 28.851 -16.938 22.930 28.851 -16.938 H13 SI7 50 SI7 H14 H14 H 0 1 N N N 23.911 27.812 -15.349 23.911 27.812 -15.349 H14 SI7 51 SI7 H15 H15 H 0 1 N N N 21.694 25.127 -16.190 21.694 25.126 -16.190 H15 SI7 52 SI7 H16 H16 H 0 1 N N N 22.968 23.903 -15.863 22.968 23.903 -15.863 H16 SI7 53 SI7 H17 H17 H 0 1 N N N 22.815 24.127 -13.600 22.815 24.127 -13.600 H17 SI7 54 SI7 H18 H18 H 0 1 N N N 22.186 25.807 -13.692 22.186 25.807 -13.692 H18 SI7 55 SI7 H19 H19 H 0 1 N N N 20.749 23.434 -13.379 20.749 23.434 -13.379 H19 SI7 56 SI7 H20 H20 H 0 1 N N N 17.779 23.892 -14.454 17.779 23.892 -14.455 H20 SI7 57 SI7 H21 H21 H 0 1 N N N 18.535 23.570 -12.857 18.535 23.570 -12.857 H21 SI7 58 SI7 H22 H22 H 0 1 N N N 17.229 26.167 -13.727 17.229 26.167 -13.727 H22 SI7 59 SI7 H23 H23 H 0 1 N N N 16.488 24.908 -12.682 16.488 24.908 -12.682 H23 SI7 60 SI7 H24 H24 H 0 1 N N N 18.149 25.275 -10.974 18.149 25.274 -10.974 H24 SI7 61 SI7 H25 H25 H 0 1 N N N 19.039 26.422 -12.032 19.039 26.421 -12.032 H25 SI7 62 SI7 H26 H26 H 0 1 N N N 17.196 28.002 -11.904 17.196 28.002 -11.904 H26 SI7 63 SI7 H27 H27 H 0 1 N N N 16.256 26.848 -10.898 16.256 26.848 -10.898 H27 SI7 64 SI7 H28 H28 H 0 1 N N N 18.983 27.896 -10.076 18.983 27.896 -10.076 H28 SI7 65 SI7 H29 H29 H 0 1 N N N 17.774 29.929 -10.096 17.774 29.929 -10.096 H29 SI7 66 SI7 H30 H30 H 0 1 N N N 15.362 29.140 -10.326 15.362 29.140 -10.326 H30 SI7 67 SI7 H31 H31 H 0 1 N N N 18.314 28.000 -6.454 18.314 28.000 -6.454 H31 SI7 68 SI7 H32 H32 H 0 1 N N N 19.506 28.274 -7.770 19.506 28.274 -7.770 H32 SI7 69 SI7 H33 H33 H 0 1 N N N 18.260 30.253 -7.911 18.260 30.253 -7.911 H33 SI7 70 SI7 H34 H34 H 0 1 N N N 16.287 29.773 -6.429 16.287 29.773 -6.429 H34 SI7 71 SI7 H36 H36 H 0 1 N N N 21.376 28.346 -16.192 21.376 28.346 -16.192 H36 SI7 72 SI7 H37 H37 H 0 1 N N N 22.370 27.081 -14.787 22.370 27.081 -14.787 H37 SI7 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SI7 C17 C18 DOUB Y N 1 SI7 C17 C16 SING Y N 2 SI7 C18 C19 SING Y N 3 SI7 C16 N5 DOUB Y N 4 SI7 C19 C15 DOUB Y N 5 SI7 N5 C15 SING Y N 6 SI7 N5 CU1 SING N N 7 SI7 C23 C24 DOUB Y N 8 SI7 C23 N6 SING Y N 9 SI7 C15 C14 SING N N 10 SI7 CU1 N6 SING N N 11 SI7 CU1 N4 SING N N 12 SI7 C24 C25 SING Y N 13 SI7 N6 C22 DOUB Y N 14 SI7 C14 C13 SING N N 15 SI7 C25 C26 DOUB Y N 16 SI7 C22 C26 SING Y N 17 SI7 C22 C21 SING N N 18 SI7 N4 C13 SING N N 19 SI7 N4 C12 SING N N 20 SI7 N4 C20 SING N N 21 SI7 C12 C11 SING N N 22 SI7 C21 C20 SING N N 23 SI7 O2 C10 DOUB N N 24 SI7 C11 N3 SING N N 25 SI7 C10 N3 SING N N 26 SI7 C10 C9 SING N N 27 SI7 C9 C8 SING N N 28 SI7 C8 C7 SING N N 29 SI7 C7 C6 SING N N 30 SI7 C6 C5 SING N N 31 SI7 C5 C4 SING N N 32 SI7 C5 S1 SING N N 33 SI7 C4 N2 SING N N 34 SI7 C4 C2 SING N N 35 SI7 N2 C1 SING N N 36 SI7 S1 C3 SING N N 37 SI7 C1 O1 DOUB N N 38 SI7 C1 N1 SING N N 39 SI7 C2 C3 SING N N 40 SI7 C2 N1 SING N N 41 SI7 CU1 O3 SING N N 42 SI7 C23 H1 SING N N 43 SI7 C24 H2 SING N N 44 SI7 C25 H3 SING N N 45 SI7 C26 H4 SING N N 46 SI7 C21 H5 SING N N 47 SI7 C21 H6 SING N N 48 SI7 C20 H7 SING N N 49 SI7 C20 H8 SING N N 50 SI7 C16 H9 SING N N 51 SI7 C17 H10 SING N N 52 SI7 C18 H11 SING N N 53 SI7 C19 H12 SING N N 54 SI7 C14 H13 SING N N 55 SI7 C13 H14 SING N N 56 SI7 C12 H15 SING N N 57 SI7 C12 H16 SING N N 58 SI7 C11 H17 SING N N 59 SI7 C11 H18 SING N N 60 SI7 N3 H19 SING N N 61 SI7 C9 H20 SING N N 62 SI7 C9 H21 SING N N 63 SI7 C8 H22 SING N N 64 SI7 C8 H23 SING N N 65 SI7 C7 H24 SING N N 66 SI7 C7 H25 SING N N 67 SI7 C6 H26 SING N N 68 SI7 C6 H27 SING N N 69 SI7 C5 H28 SING N N 70 SI7 C4 H29 SING N N 71 SI7 N2 H30 SING N N 72 SI7 C3 H31 SING N N 73 SI7 C3 H32 SING N N 74 SI7 C2 H33 SING N N 75 SI7 N1 H34 SING N N 76 SI7 C14 H36 SING N N 77 SI7 C13 H37 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SI7 SMILES ACDLabs 12.01 "[Cu]23(n1c(cccc1)CCN2(CCc4n3cccc4)CCNC(CCCCC6C5NC(NC5CS6)=O)=O)O" SI7 InChI InChI 1.03 "InChI=1S/C26H36N6O2S.Cu.H2O/c33-24(10-2-1-9-23-25-22(19-35-23)30-26(34)31-25)29-15-18-32(16-11-20-7-3-5-13-27-20)17-12-21-8-4-6-14-28-21;;/h3-8,13-14,22-23,25H,1-2,9-12,15-19H2,(H,29,33)(H2,30,31,34);;1H2/q;+1;/p-1/t22-,23-,25-;;/m0../s1" SI7 InChIKey InChI 1.03 VJQJBNZBGSOUKA-HRKQCRCBSA-M SI7 SMILES_CANONICAL CACTVS 3.385 "O.[Cu].O=C(CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12)NCCN(CCc3ccccn3)CCc4ccccn4" SI7 SMILES CACTVS 3.385 "O.[Cu].O=C(CCCC[CH]1SC[CH]2NC(=O)N[CH]12)NCCN(CCc3ccccn3)CCc4ccccn4" SI7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1C[N]2(CCC3=CC=CC=[N]3[Cu]2([N]4=C1C=CC=C4)[O])CCNC(=O)CCCC[C@H]5[C@@H]6[C@H](CS5)NC(=O)N6" SI7 SMILES "OpenEye OEToolkits" 2.0.6 "C1C[N]2(CCC3=CC=CC=[N]3[Cu]2([N]4=C1C=CC=C4)[O])CCNC(=O)CCCCC5C6C(CS5)NC(=O)N6" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SI7 "SYSTEMATIC NAME" ACDLabs 12.01 "[N-(2-{bis[2-(pyridin-2-yl-kappaN)ethyl]amino-kappaN}ethyl)-5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentanamide](hydroxy)copper" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SI7 "Create component" 2017-07-06 RCSB SI7 "Initial release" 2017-11-22 RCSB #