data_SIB # _chem_comp.id SIB _chem_comp.name "(2S)-2-AMINO-4-({[(2S,3S,4R,5R)-3,4-DIHYDROXY-5-(6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL)TETRAHYDROFURAN-2-YL]METHYL}THIO)BUTANOIC ACID" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C14 H19 N5 O6 S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-04-26 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 385.396 _chem_comp.one_letter_code C _chem_comp.three_letter_code SIB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "Corina V3.40" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SIB N N N 0 1 N N N 49.190 29.469 -0.732 6.981 0.673 0.730 N SIB 1 SIB CA CA C 0 1 N N S 49.415 28.572 -1.883 6.343 -0.638 0.549 CA SIB 2 SIB CB CB C 0 1 N N N 49.612 29.379 -3.175 5.093 -0.481 -0.319 CB SIB 3 SIB CG CG C 0 1 N N N 48.379 30.217 -3.493 4.061 0.371 0.422 CG SIB 4 SIB SD SD S 0 1 N N N 46.936 29.147 -3.669 2.579 0.557 -0.606 SD SIB 5 SIB C C C 0 1 N N N 50.643 27.729 -1.661 7.309 -1.577 -0.127 C SIB 6 SIB OXT O O 0 1 N Y N 51.346 27.908 -0.693 7.125 -2.904 -0.043 OXT SIB 7 SIB O OXT O 0 1 N N N 50.956 26.784 -2.550 8.249 -1.136 -0.744 O SIB 8 SIB "C5'" C5* C 0 1 N N N 45.608 30.368 -3.678 1.492 1.579 0.425 "C5'" SIB 9 SIB "C4'" C4* C 0 1 N N S 45.673 31.177 -2.391 0.176 1.831 -0.314 "C4'" SIB 10 SIB "O4'" O4* O 0 1 N N N 44.727 32.252 -2.435 -0.546 0.597 -0.460 "O4'" SIB 11 SIB "C3'" C3* C 0 1 N N S 45.332 30.313 -1.160 -0.712 2.786 0.507 "C3'" SIB 12 SIB "O3'" O3* O 0 1 N N N 46.454 30.232 -0.273 -0.993 3.972 -0.239 "O3'" SIB 13 SIB "C2'" C2* C 0 1 N N R 44.117 31.051 -0.558 -2.010 1.980 0.753 "C2'" SIB 14 SIB "O2'" O2* O 0 1 N N N 44.049 30.951 0.860 -3.163 2.813 0.608 "O2'" SIB 15 SIB "C1'" C1* C 0 1 N N R 44.372 32.475 -1.070 -1.951 0.917 -0.373 "C1'" SIB 16 SIB N9 N9 N 0 1 Y N N 43.194 33.350 -0.939 -2.729 -0.268 -0.005 N9 SIB 17 SIB C8 C8 C 0 1 Y N N 41.914 32.996 -0.622 -2.263 -1.364 0.658 C8 SIB 18 SIB N7 N7 N 0 1 Y N N 41.153 34.044 -0.582 -3.227 -2.225 0.817 N7 SIB 19 SIB C5 C5 C 0 1 Y N N 41.886 35.135 -0.867 -4.361 -1.734 0.268 C5 SIB 20 SIB C6 C6 C 0 1 N N N 41.616 36.519 -0.962 -5.688 -2.216 0.141 C6 SIB 21 SIB O6 O6 O 0 1 N N N 40.359 36.981 -0.728 -6.005 -3.305 0.589 O6 SIB 22 SIB N1 N1 N 0 1 N N N 42.633 37.367 -1.291 -6.594 -1.434 -0.488 N1 SIB 23 SIB C2 C2 C 0 1 N N N 43.882 36.919 -1.520 -6.231 -0.224 -0.982 C2 SIB 24 SIB N3 N3 N 0 1 N N N 44.174 35.616 -1.428 -5.014 0.233 -0.874 N3 SIB 25 SIB C4 C4 C 0 1 Y N N 43.213 34.705 -1.108 -4.057 -0.475 -0.259 C4 SIB 26 SIB H 1HN H 0 1 N N N 49.139 28.928 0.108 7.250 1.070 -0.157 H SIB 27 SIB H2 2HN H 0 1 N Y N 49.946 30.120 -0.664 6.377 1.301 1.239 H2 SIB 28 SIB HA HA H 0 1 N N N 48.528 27.929 -1.979 6.062 -1.043 1.521 HA SIB 29 SIB HB2 1HB H 0 1 N N N 50.476 30.049 -3.049 5.360 0.005 -1.257 HB2 SIB 30 SIB HB3 2HB H 0 1 N N N 49.781 28.676 -4.004 4.669 -1.464 -0.527 HB3 SIB 31 SIB HG2 1HG H 0 1 N N N 48.204 30.932 -2.675 3.794 -0.116 1.360 HG2 SIB 32 SIB HG3 2HG H 0 1 N N N 48.544 30.760 -4.435 4.484 1.354 0.631 HG3 SIB 33 SIB HO HO H 0 1 N N N 52.075 27.299 -0.713 7.771 -3.466 -0.492 HO SIB 34 SIB "H5'1" 1H5* H 0 0 N N N 45.727 31.038 -4.542 1.289 1.062 1.363 "H5'1" SIB 35 SIB "H5'2" 2H5* H 0 0 N N N 44.635 29.859 -3.749 1.979 2.532 0.633 "H5'2" SIB 36 SIB "H4'" H4* H 0 1 N N N 46.702 31.557 -2.304 0.378 2.260 -1.295 "H4'" SIB 37 SIB "H3'" H3* H 0 1 N N N 45.099 29.262 -1.386 -0.232 3.035 1.453 "H3'" SIB 38 SIB "HO3'" HO3* H 0 0 N N N 47.258 30.214 -0.779 -1.549 4.610 0.230 "HO3'" SIB 39 SIB "H2'" H2* H 0 1 N N N 43.140 30.641 -0.852 -1.995 1.508 1.735 "H2'" SIB 40 SIB "HO2'" HO2* H 0 0 N N N 44.034 30.035 1.113 -3.198 3.549 1.235 "HO2'" SIB 41 SIB "H1'" H1* H 0 1 N N N 45.146 33.004 -0.494 -2.309 1.335 -1.314 "H1'" SIB 42 SIB H8 H8 H 0 1 N N N 41.583 31.986 -0.432 -1.248 -1.498 1.000 H8 SIB 43 SIB HN1 HN1 H 0 1 N N N 42.446 38.347 -1.364 -7.509 -1.740 -0.588 HN1 SIB 44 SIB HC2 H2 H 0 1 N N N 44.660 37.621 -1.782 -6.973 0.381 -1.481 HC2 SIB 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SIB N CA SING N N 1 SIB N H SING N N 2 SIB N H2 SING N N 3 SIB CA CB SING N N 4 SIB CA C SING N N 5 SIB CA HA SING N N 6 SIB CB CG SING N N 7 SIB CB HB2 SING N N 8 SIB CB HB3 SING N N 9 SIB CG SD SING N N 10 SIB CG HG2 SING N N 11 SIB CG HG3 SING N N 12 SIB SD "C5'" SING N N 13 SIB C O DOUB N N 14 SIB C OXT SING N N 15 SIB OXT HO SING N N 16 SIB "C5'" "C4'" SING N N 17 SIB "C5'" "H5'1" SING N N 18 SIB "C5'" "H5'2" SING N N 19 SIB "C4'" "O4'" SING N N 20 SIB "C4'" "C3'" SING N N 21 SIB "C4'" "H4'" SING N N 22 SIB "O4'" "C1'" SING N N 23 SIB "C3'" "C2'" SING N N 24 SIB "C3'" "O3'" SING N N 25 SIB "C3'" "H3'" SING N N 26 SIB "O3'" "HO3'" SING N N 27 SIB "C2'" "C1'" SING N N 28 SIB "C2'" "O2'" SING N N 29 SIB "C2'" "H2'" SING N N 30 SIB "O2'" "HO2'" SING N N 31 SIB "C1'" N9 SING N N 32 SIB "C1'" "H1'" SING N N 33 SIB N9 C4 SING Y N 34 SIB N9 C8 SING Y N 35 SIB C8 N7 DOUB Y N 36 SIB C8 H8 SING N N 37 SIB N7 C5 SING Y N 38 SIB C5 C4 DOUB Y N 39 SIB C5 C6 SING N N 40 SIB C6 N1 SING N N 41 SIB C6 O6 DOUB N N 42 SIB N1 C2 SING N N 43 SIB N1 HN1 SING N N 44 SIB C2 N3 DOUB N N 45 SIB C2 HC2 SING N N 46 SIB N3 C4 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SIB SMILES ACDLabs 10.04 "O=C(O)C(N)CCSCC3OC(n2cnc1c2N=CNC1=O)C(O)C3O" SIB SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3C(=O)NC=Nc23)C(O)=O" SIB SMILES CACTVS 3.341 "N[CH](CCSC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3C(=O)NC=Nc23)C(O)=O" SIB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CSCC[C@@H](C(=O)O)N)O)O)N=CNC2=O" SIB SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)CSCCC(C(=O)O)N)O)O)N=CNC2=O" SIB InChI InChI 1.03 "InChI=1S/C14H19N5O6S/c15-6(14(23)24)1-2-26-3-7-9(20)10(21)13(25-7)19-5-18-8-11(19)16-4-17-12(8)22/h4-7,9-10,13,20-21H,1-3,15H2,(H,23,24)(H,16,17,22)/t6-,7+,9+,10+,13+/m0/s1" SIB InChIKey InChI 1.03 VNPWVMVYUSNFAW-WFMPWKQPSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SIB "SYSTEMATIC NAME" ACDLabs 10.04 "(2S)-2-amino-4-({[(2S,3S,4R,5R)-3,4-dihydroxy-5-(6-oxo-1,6-dihydro-9H-purin-9-yl)tetrahydrofuran-2-yl]methyl}sulfanyl)butanoic acid (non-preferred name)" SIB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-4-[[(2S,3S,4R,5R)-3,4-dihydroxy-5-(6-oxo-1H-purin-9-yl)oxolan-2-yl]methylsulfanyl]butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SIB "Create component" 2007-04-26 EBI SIB "Modify descriptor" 2011-06-04 RCSB #