data_SID # _chem_comp.id SID _chem_comp.name "methyl 9-S-acetyl-5-acetamido-3,5-dideoxy-9-thio-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C14 H23 N O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;methyl 9-S-acetyl-5-(acetylamino)-3,5-dideoxy-9-thio-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid; 5-N-acetyl-9-S-acetyl-9-thioneuraminic acid methyl glycoside; methyl 9-S-acetyl-5-acetamido-3,5-dideoxy-9-thio-D-glycero-alpha-D-galacto-non-2-ulosidonic acid; methyl 9-S-acetyl-5-acetamido-3,5-dideoxy-9-thio-D-glycero-D-galacto-non-2-ulosidonic acid; methyl 9-S-acetyl-5-acetamido-3,5-dideoxy-9-thio-D-glycero-galacto-non-2-ulosidonic acid ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-07-24 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 381.399 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SID _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3I27 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 SID "methyl 9-S-acetyl-5-(acetylamino)-3,5-dideoxy-9-thio-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid" PDB ? 2 SID "5-N-acetyl-9-S-acetyl-9-thioneuraminic acid methyl glycoside" PDB ? 3 SID "methyl 9-S-acetyl-5-acetamido-3,5-dideoxy-9-thio-D-glycero-alpha-D-galacto-non-2-ulosidonic acid" PDB ? 4 SID "methyl 9-S-acetyl-5-acetamido-3,5-dideoxy-9-thio-D-glycero-D-galacto-non-2-ulosidonic acid" PDB ? 5 SID "methyl 9-S-acetyl-5-acetamido-3,5-dideoxy-9-thio-D-glycero-galacto-non-2-ulosidonic acid" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SID C1 C1 C 0 1 N N N 40.388 26.675 -31.889 2.094 2.275 1.170 C1 SID 1 SID O1A O1 O 0 1 N N N 39.227 26.571 -32.358 2.053 3.425 1.538 O1A SID 2 SID C2 C2 C 0 1 N N R 40.631 27.752 -30.810 1.965 1.947 -0.295 C2 SID 3 SID O2 O2 O 0 1 N N N 40.527 27.143 -29.480 1.897 3.159 -1.051 O2 SID 4 SID C3 C3 C 0 1 N N N 42.038 28.390 -30.991 3.180 1.132 -0.746 C3 SID 5 SID O1B O3 O 0 1 N N N 41.364 25.965 -32.214 2.261 1.289 2.066 O1B SID 6 SID C4 C4 C 0 1 N N S 42.107 29.389 -32.189 3.211 -0.191 0.025 C4 SID 7 SID O4 O4 O 0 1 N N N 43.341 30.125 -32.174 4.300 -0.990 -0.441 O4 SID 8 SID C5 C5 C 0 1 N N R 40.926 30.373 -32.218 1.893 -0.936 -0.206 C5 SID 9 SID N5 N5 N 0 1 N N N 40.906 31.156 -33.474 1.882 -2.168 0.585 N5 SID 10 SID C6 C6 C 0 1 N N R 39.662 29.544 -32.130 0.728 -0.041 0.223 C6 SID 11 SID O6 O6 O 0 1 N N N 39.609 28.791 -30.893 0.775 1.185 -0.510 O6 SID 12 SID C7 C7 C 0 1 N N R 38.431 30.424 -32.115 -0.595 -0.755 -0.061 C7 SID 13 SID O7 O7 O 0 1 N N N 38.485 31.385 -31.039 -0.646 -1.134 -1.438 O7 SID 14 SID C8 C8 C 0 1 N N S 37.249 29.511 -31.910 -1.760 0.187 0.251 C8 SID 15 SID O8 O8 O 0 1 N N N 36.994 28.791 -33.133 -1.710 0.566 1.628 O8 SID 16 SID C9 C9 C 0 1 N N N 36.068 30.369 -31.497 -3.083 -0.527 -0.033 C9 SID 17 SID S9 S9 S 0 1 N N N 34.526 29.695 -32.165 -4.455 0.632 0.195 S9 SID 18 SID C10 C10 C 0 1 N N N 41.041 32.484 -33.524 2.450 -3.289 0.097 C10 SID 19 SID O10 O10 O 0 1 N N N 41.180 33.203 -32.540 2.972 -3.276 -0.998 O10 SID 20 SID C11 C11 C 0 1 N N N 41.003 33.089 -34.925 2.438 -4.556 0.912 C11 SID 21 SID CA9 CA9 C 0 1 N N N 34.129 30.868 -33.388 -5.775 -0.394 -0.175 CA9 SID 22 SID OA9 OA9 O 0 1 N N N 33.433 31.833 -33.083 -5.577 -1.551 -0.481 OA9 SID 23 SID CM2 CM2 C 0 1 N N N 39.267 26.490 -29.215 1.654 2.962 -2.445 CM2 SID 24 SID CM9 CM9 C 0 1 N N N 34.610 30.648 -34.826 -7.183 0.141 -0.122 CM9 SID 25 SID H32 H3 H 0 1 N N N 42.290 28.937 -30.070 3.107 0.929 -1.814 H32 SID 26 SID H31 H3A H 0 1 N N N 42.762 27.582 -31.173 4.091 1.695 -0.543 H31 SID 27 SID HO1B HO3 H 0 0 N N N 41.093 25.334 -32.871 2.339 1.548 2.994 HO1B SID 28 SID H4 H4 H 0 1 N N N 42.051 28.774 -33.099 3.336 0.010 1.089 H4 SID 29 SID HO4 HO4 H 0 1 N Y N 43.361 30.725 -32.910 5.167 -0.576 -0.331 HO4 SID 30 SID H5 H5 H 0 1 N N N 41.013 31.085 -31.384 1.794 -1.181 -1.264 H5 SID 31 SID HN5 HN5 H 0 1 N N N 40.784 30.662 -34.335 1.465 -2.178 1.461 HN5 SID 32 SID H6 H6 H 0 1 N N N 39.679 28.880 -33.007 0.805 0.170 1.290 H6 SID 33 SID H7 H7 H 0 1 N N N 38.359 30.988 -33.057 -0.670 -1.645 0.564 H7 SID 34 SID HO7 HO7 H 0 1 N Y N 37.702 31.922 -31.054 -0.585 -0.391 -2.053 HO7 SID 35 SID H8 H8 H 0 1 N N N 37.439 28.767 -31.122 -1.686 1.077 -0.374 H8 SID 36 SID HO8 HO8 H 0 1 N Y N 36.250 28.213 -33.011 -1.771 -0.177 2.243 HO8 SID 37 SID H92 H9 H 0 1 N N N 36.005 30.391 -30.399 -3.085 -0.894 -1.059 H92 SID 38 SID H91 H9A H 0 1 N N N 36.212 31.389 -31.883 -3.198 -1.366 0.653 H91 SID 39 SID H111 H11 H 0 0 N N N 41.115 34.181 -34.856 1.930 -4.375 1.859 H111 SID 40 SID H113 H11A H 0 0 N N N 41.825 32.673 -35.526 1.913 -5.337 0.361 H113 SID 41 SID H112 H11B H 0 0 N N N 40.042 32.848 -35.402 3.463 -4.874 1.105 H112 SID 42 SID HM2 HM2 H 0 1 N N N 39.280 26.065 -28.200 2.504 2.447 -2.893 HM2 SID 43 SID HM2A HM2A H 0 0 N N N 38.450 27.223 -29.295 0.755 2.359 -2.575 HM2A SID 44 SID HM2B HM2B H 0 0 N N N 39.110 25.685 -29.948 1.517 3.928 -2.930 HM2B SID 45 SID HM9 HM9 H 0 1 N N N 34.236 31.460 -35.467 -7.161 1.192 0.169 HM9 SID 46 SID HM9A HM9A H 0 0 N N N 35.710 30.641 -34.848 -7.646 0.045 -1.104 HM9A SID 47 SID HM9B HM9B H 0 0 N N N 34.230 29.684 -35.196 -7.759 -0.426 0.609 HM9B SID 48 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SID O1A C1 DOUB N N 1 SID O1B C1 SING N N 2 SID C1 C2 SING N N 3 SID C3 C2 SING N N 4 SID O6 C2 SING N N 5 SID C2 O2 SING N N 6 SID O2 CM2 SING N N 7 SID C4 C3 SING N N 8 SID C3 H32 SING N N 9 SID C3 H31 SING N N 10 SID O1B HO1B SING N N 11 SID C5 C4 SING N N 12 SID C4 O4 SING N N 13 SID C4 H4 SING N N 14 SID O4 HO4 SING N N 15 SID N5 C5 SING N N 16 SID C5 C6 SING N N 17 SID C5 H5 SING N N 18 SID C10 N5 SING N N 19 SID N5 HN5 SING N N 20 SID C6 C7 SING N N 21 SID C6 O6 SING N N 22 SID C6 H6 SING N N 23 SID C7 C8 SING N N 24 SID C7 O7 SING N N 25 SID C7 H7 SING N N 26 SID O7 HO7 SING N N 27 SID O8 C8 SING N N 28 SID C8 C9 SING N N 29 SID C8 H8 SING N N 30 SID O8 HO8 SING N N 31 SID S9 C9 SING N N 32 SID C9 H92 SING N N 33 SID C9 H91 SING N N 34 SID CA9 S9 SING N N 35 SID C11 C10 SING N N 36 SID C10 O10 DOUB N N 37 SID C11 H111 SING N N 38 SID C11 H113 SING N N 39 SID C11 H112 SING N N 40 SID CM9 CA9 SING N N 41 SID CA9 OA9 DOUB N N 42 SID CM2 HM2 SING N N 43 SID CM2 HM2A SING N N 44 SID CM2 HM2B SING N N 45 SID CM9 HM9 SING N N 46 SID CM9 HM9A SING N N 47 SID CM9 HM9B SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SID SMILES ACDLabs 11.02 "O=C(SCC(O)C(O)C1OC(OC)(C(=O)O)CC(O)C1NC(=O)C)C" SID SMILES_CANONICAL CACTVS 3.352 "CO[C@@]1(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O1)[C@H](O)[C@H](O)CSC(C)=O)C(O)=O" SID SMILES CACTVS 3.352 "CO[C]1(C[CH](O)[CH](NC(C)=O)[CH](O1)[CH](O)[CH](O)CSC(C)=O)C(O)=O" SID SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CSC(=O)C)O)O)(C(=O)O)OC)O" SID SMILES "OpenEye OEToolkits" 1.7.0 "CC(=O)NC1C(CC(OC1C(C(CSC(=O)C)O)O)(C(=O)O)OC)O" SID InChI InChI 1.03 "InChI=1S/C14H23NO9S/c1-6(16)15-10-8(18)4-14(23-3,13(21)22)24-12(10)11(20)9(19)5-25-7(2)17/h8-12,18-20H,4-5H2,1-3H3,(H,15,16)(H,21,22)/t8-,9+,10+,11+,12+,14+/m0/s1" SID InChIKey InChI 1.03 QHXQSHGOUBTADZ-KXEMTNKZSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SID "SYSTEMATIC NAME" ACDLabs 11.02 "methyl 9-S-acetyl-5-(acetylamino)-3,5-dideoxy-9-thio-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid" SID "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 ;(2R,4S,5R,6R)-5-acetamido-6-[(1R,2S)-3-ethanoylsulfanyl-1,2-dihydroxy-propyl]-4-hydroxy-2-methoxy-oxane-2-carboxylic acid ; # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support SID "CARBOHYDRATE ISOMER" D PDB ? SID "CARBOHYDRATE RING" pyranose PDB ? SID "CARBOHYDRATE ANOMER" alpha PDB ? SID "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SID "Create component" 2009-07-24 PDBJ SID "Modify descriptor" 2011-06-04 RCSB SID "Other modification" 2020-07-03 RCSB SID "Modify name" 2020-07-17 RCSB SID "Modify synonyms" 2020-07-17 RCSB SID "Modify linking type" 2020-07-17 RCSB SID "Modify atom id" 2020-07-17 RCSB SID "Modify component atom id" 2020-07-17 RCSB SID "Modify leaving atom flag" 2020-07-17 RCSB ##