data_SIS
#
_chem_comp.id SIS
_chem_comp.name "(1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H37 N5 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Sisomicin
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-06-12
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 447.526
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SIS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4F8U
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SIS C11 C11 C 0 1 N N S -30.990 -0.347 -5.662 -3.067 0.772 0.444 C11 SIS 1
SIS C12 C12 C 0 1 N N R -35.486 2.257 -7.134 0.717 -2.942 0.515 C12 SIS 2
SIS C13 C13 C 0 1 N N R -34.928 1.674 -10.490 2.530 -0.250 -1.177 C13 SIS 3
SIS C21 C21 C 0 1 N N R -31.021 -1.789 -5.032 -3.724 1.864 1.299 C21 SIS 4
SIS C22 C22 C 0 1 N N N -34.788 2.947 -5.880 -0.733 -3.426 0.470 C22 SIS 5
SIS C23 C23 C 0 1 N N R -36.252 1.346 -11.217 4.045 -0.031 -1.172 C23 SIS 6
SIS C31 C31 C 0 1 N N N -30.981 -1.698 -3.454 -4.428 2.848 0.358 C31 SIS 7
SIS C32 C32 C 0 1 N N S -33.952 1.863 -5.087 -1.624 -2.441 1.229 C32 SIS 8
SIS C33 C33 C 0 1 N N R -36.368 -0.236 -11.328 4.448 0.669 0.130 C33 SIS 9
SIS C41 C41 C 0 1 N N N -29.990 -0.590 -2.958 -5.232 2.082 -0.657 C41 SIS 10
SIS C42 C42 C 0 1 N N R -32.877 1.231 -6.027 -1.526 -1.060 0.578 C42 SIS 11
SIS C43 C43 C 0 1 N N R -35.122 -0.797 -12.179 3.669 1.983 0.252 C43 SIS 12
SIS C51 C51 C 0 1 N N N -29.492 0.332 -3.808 -5.031 0.814 -0.900 C51 SIS 13
SIS C52 C52 C 0 1 N N S -33.583 0.583 -7.299 -0.076 -0.576 0.623 C52 SIS 14
SIS C53 C53 C 0 1 N N N -33.784 -0.396 -11.457 2.169 1.686 0.192 C53 SIS 15
SIS C61 C61 C 0 1 N N N -28.512 1.437 -3.355 -5.885 0.142 -1.944 C61 SIS 16
SIS C62 C62 C 0 1 N N S -34.401 1.684 -8.074 0.815 -1.561 -0.136 C62 SIS 17
SIS C83 C83 C 0 1 N N N -35.075 -2.337 -12.381 4.005 2.654 1.585 C83 SIS 18
SIS C93 C93 C 0 1 N N N -38.786 -0.885 -11.119 6.658 -0.213 0.573 C93 SIS 19
SIS N12 N12 N 0 1 N N N -36.243 3.227 -7.866 1.572 -3.889 -0.213 N12 SIS 20
SIS N21 N21 N 0 1 N N N -32.237 -2.467 -5.497 -4.706 1.258 2.208 N21 SIS 21
SIS N32 N32 N 0 1 N N N -33.271 2.478 -3.920 -3.017 -2.905 1.185 N32 SIS 22
SIS N33 N33 N 0 1 N N N -37.642 -0.600 -12.009 5.889 0.950 0.111 N33 SIS 23
SIS N61 N61 N 0 1 N N N -29.071 2.732 -3.698 -5.040 -0.279 -3.070 N61 SIS 24
SIS O11 O11 O 0 1 N N N -32.197 0.263 -5.266 -2.358 -0.139 1.286 O11 SIS 25
SIS O23 O23 O 0 1 N N N -37.331 1.884 -10.485 4.711 -1.292 -1.262 O23 SIS 26
SIS O43 O43 O 0 1 N N N -35.124 -0.260 -13.491 4.027 2.852 -0.825 O43 SIS 27
SIS O51 O51 O 0 1 N N N -29.820 0.373 -5.203 -4.097 0.075 -0.262 O51 SIS 28
SIS O52 O52 O 0 1 N N N -32.577 0.054 -8.168 0.015 0.714 0.015 O52 SIS 29
SIS O53 O53 O 0 1 N N N -33.759 1.107 -11.220 1.867 1.007 -1.029 O53 SIS 30
SIS O62 O62 O 0 1 N N N -35.024 1.096 -9.177 2.170 -1.109 -0.093 O62 SIS 31
SIS H1 H1 H 0 1 N N N -30.956 -0.452 -6.756 -2.377 1.227 -0.268 H1 SIS 32
SIS H2 H2 H 0 1 N N N -36.130 1.440 -6.777 1.047 -2.879 1.553 H2 SIS 33
SIS H3 H3 H 0 1 N N N -34.823 2.767 -10.419 2.233 -0.710 -2.120 H3 SIS 34
SIS H4 H4 H 0 1 N N N -30.131 -2.339 -5.372 -2.962 2.388 1.876 H4 SIS 35
SIS H5 H5 H 0 1 N N N -34.118 3.747 -6.227 -1.063 -3.490 -0.567 H5 SIS 36
SIS H6 H6 H 0 1 N N N -35.557 3.374 -5.220 -0.803 -4.410 0.934 H6 SIS 37
SIS H7 H7 H 0 1 N N N -36.217 1.766 -12.233 4.326 0.591 -2.023 H7 SIS 38
SIS H8 H8 H 0 1 N N N -31.990 -1.463 -3.086 -5.091 3.492 0.936 H8 SIS 39
SIS H9 H9 H 0 1 N N N -30.660 -2.669 -3.050 -3.683 3.458 -0.153 H9 SIS 40
SIS H10 H10 H 0 1 N N N -34.636 1.072 -4.747 -1.294 -2.377 2.266 H10 SIS 41
SIS H11 H11 H 0 1 N N N -36.334 -0.671 -10.318 4.212 0.026 0.977 H11 SIS 42
SIS H12 H12 H 0 1 N N N -29.701 -0.564 -1.918 -6.004 2.601 -1.206 H12 SIS 43
SIS H13 H13 H 0 1 N N N -32.192 2.021 -6.370 -1.856 -1.123 -0.460 H13 SIS 44
SIS H14 H14 H 0 1 N N N -34.271 -0.206 -6.962 0.254 -0.512 1.660 H14 SIS 45
SIS H15 H15 H 0 1 N N N -33.718 -0.919 -10.492 1.889 1.056 1.036 H15 SIS 46
SIS H16 H16 H 0 1 N N N -32.929 -0.681 -12.087 1.611 2.621 0.235 H16 SIS 47
SIS H17 H17 H 0 1 N N N -28.364 1.375 -2.267 -6.372 -0.730 -1.509 H17 SIS 48
SIS H18 H18 H 0 1 N N N -27.546 1.305 -3.865 -6.642 0.841 -2.300 H18 SIS 49
SIS H19 H19 H 0 1 N N N -33.718 2.491 -8.378 0.485 -1.625 -1.173 H19 SIS 50
SIS H20 H20 H 0 1 N N N -35.071 -2.836 -11.401 3.734 1.989 2.405 H20 SIS 51
SIS H21 H21 H 0 1 N N N -35.958 -2.659 -12.952 5.073 2.865 1.627 H21 SIS 52
SIS H22 H22 H 0 1 N N N -34.163 -2.607 -12.934 3.446 3.586 1.674 H22 SIS 53
SIS H23 H23 H 0 1 N N N -39.668 -1.141 -11.725 6.364 -0.461 1.593 H23 SIS 54
SIS H24 H24 H 0 1 N N N -38.536 -1.730 -10.460 6.459 -1.063 -0.079 H24 SIS 55
SIS H25 H25 H 0 1 N N N -39.006 0.003 -10.509 7.722 0.023 0.550 H25 SIS 56
SIS H26 H26 H 0 1 N N N -36.952 3.612 -7.275 1.525 -4.809 0.198 H26 SIS 57
SIS H27 H27 H 0 1 N N N -35.636 3.958 -8.177 1.328 -3.917 -1.192 H27 SIS 58
SIS H29 H29 H 0 1 N N N -32.276 -3.387 -5.107 -5.151 1.960 2.780 H29 SIS 59
SIS H30 H30 H 0 1 N N N -33.040 -1.947 -5.206 -5.391 0.723 1.695 H30 SIS 60
SIS H32 H32 H 0 1 N N N -33.953 2.885 -3.312 -3.108 -3.816 1.610 H32 SIS 61
SIS H33 H33 H 0 1 N N N -32.760 1.776 -3.424 -3.634 -2.239 1.624 H33 SIS 62
SIS H35 H35 H 0 1 N N N -37.899 0.160 -12.606 6.189 1.240 -0.808 H35 SIS 63
SIS H37 H37 H 0 1 N N N -28.443 3.454 -3.408 -4.291 -0.877 -2.756 H37 SIS 64
SIS H38 H38 H 0 1 N N N -29.206 2.785 -4.687 -5.589 -0.733 -3.784 H38 SIS 65
SIS H40 H40 H 0 1 N N N -37.239 2.828 -10.433 4.498 -1.793 -2.061 H40 SIS 66
SIS H41 H41 H 0 1 N N N -35.152 0.688 -13.445 3.567 3.703 -0.813 H41 SIS 67
SIS H42 H42 H 0 1 N N N -32.079 -0.611 -7.708 -0.467 1.407 0.487 H42 SIS 68
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SIS O43 C43 SING N N 1
SIS C83 C43 SING N N 2
SIS C43 C53 SING N N 3
SIS C43 C33 SING N N 4
SIS N33 C33 SING N N 5
SIS N33 C93 SING N N 6
SIS C53 O53 SING N N 7
SIS C33 C23 SING N N 8
SIS O53 C13 SING N N 9
SIS C23 C13 SING N N 10
SIS C23 O23 SING N N 11
SIS C13 O62 SING N N 12
SIS O62 C62 SING N N 13
SIS O52 C52 SING N N 14
SIS C62 C52 SING N N 15
SIS C62 C12 SING N N 16
SIS N12 C12 SING N N 17
SIS C52 C42 SING N N 18
SIS C12 C22 SING N N 19
SIS C42 O11 SING N N 20
SIS C42 C32 SING N N 21
SIS C22 C32 SING N N 22
SIS C11 O11 SING N N 23
SIS C11 O51 SING N N 24
SIS C11 C21 SING N N 25
SIS N21 C21 SING N N 26
SIS O51 C51 SING N N 27
SIS C32 N32 SING N N 28
SIS C21 C31 SING N N 29
SIS C51 C61 SING N N 30
SIS C51 C41 DOUB N N 31
SIS N61 C61 SING N N 32
SIS C31 C41 SING N N 33
SIS C11 H1 SING N N 34
SIS C12 H2 SING N N 35
SIS C13 H3 SING N N 36
SIS C21 H4 SING N N 37
SIS C22 H5 SING N N 38
SIS C22 H6 SING N N 39
SIS C23 H7 SING N N 40
SIS C31 H8 SING N N 41
SIS C31 H9 SING N N 42
SIS C32 H10 SING N N 43
SIS C33 H11 SING N N 44
SIS C41 H12 SING N N 45
SIS C42 H13 SING N N 46
SIS C52 H14 SING N N 47
SIS C53 H15 SING N N 48
SIS C53 H16 SING N N 49
SIS C61 H17 SING N N 50
SIS C61 H18 SING N N 51
SIS C62 H19 SING N N 52
SIS C83 H20 SING N N 53
SIS C83 H21 SING N N 54
SIS C83 H22 SING N N 55
SIS C93 H23 SING N N 56
SIS C93 H24 SING N N 57
SIS C93 H25 SING N N 58
SIS N12 H26 SING N N 59
SIS N12 H27 SING N N 60
SIS N21 H29 SING N N 61
SIS N21 H30 SING N N 62
SIS N32 H32 SING N N 63
SIS N32 H33 SING N N 64
SIS N33 H35 SING N N 65
SIS N61 H37 SING N N 66
SIS N61 H38 SING N N 67
SIS O23 H40 SING N N 68
SIS O43 H41 SING N N 69
SIS O52 H42 SING N N 70
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SIS SMILES ACDLabs 12.01 "O(C2C(O)C(OC1OC(=CCC1N)CN)C(N)CC2N)C3OCC(O)(C(NC)C3O)C"
SIS InChI InChI 1.03 "InChI=1S/C19H37N5O7/c1-19(27)7-28-18(13(26)16(19)24-2)31-15-11(23)5-10(22)14(12(15)25)30-17-9(21)4-3-8(6-20)29-17/h3,9-18,24-27H,4-7,20-23H2,1-2H3/t9-,10+,11-,12+,13-,14-,15+,16-,17-,18-,19+/m1/s1"
SIS InChIKey InChI 1.03 URWAJWIAIPFPJE-YFMIWBNJSA-N
SIS SMILES_CANONICAL CACTVS 3.370 "CN[C@@H]1[C@@H](O)[C@H](OC[C@]1(C)O)O[C@H]2[C@H](N)C[C@H](N)[C@@H](O[C@H]3OC(=CC[C@H]3N)CN)[C@@H]2O"
SIS SMILES CACTVS 3.370 "CN[CH]1[CH](O)[CH](OC[C]1(C)O)O[CH]2[CH](N)C[CH](N)[CH](O[CH]3OC(=CC[CH]3N)CN)[CH]2O"
SIS SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@]1(CO[C@@H]([C@@H]([C@H]1NC)O)O[C@H]2[C@@H](C[C@@H]([C@H]([C@@H]2O)O[C@@H]3[C@@H](CC=C(O3)CN)N)N)N)O"
SIS SMILES "OpenEye OEToolkits" 1.7.6 "CC1(COC(C(C1NC)O)OC2C(CC(C(C2O)OC3C(CC=C(O3)CN)N)N)N)O"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SIS "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside"
SIS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3R,4R,5R)-2-[(1S,2S,3R,4S,6R)-3-[[(2S,3R)-6-(aminomethyl)-3-azanyl-3,4-dihydro-2H-pyran-2-yl]oxy]-4,6-bis(azanyl)-2-oxidanyl-cyclohexyl]oxy-5-methyl-4-(methylamino)oxane-3,5-diol"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SIS "Create component" 2012-06-12 PDBJ
SIS "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id SIS
_pdbx_chem_comp_synonyms.name Sisomicin
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##