data_SIZ # _chem_comp.id SIZ _chem_comp.name "2-deoxy-2-[(difluoroacetyl)amino]-beta-D-galactopyranose" _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C8 H13 F2 N O6" _chem_comp.mon_nstd_parent_comp_id NGA _chem_comp.pdbx_synonyms ;N-DIFLUOROACETYL-D-GALACTOSAMINE; N-difluoroacetyl-beta-D-galactosamine; 2-deoxy-2-[(difluoroacetyl)amino]-beta-D-galactose; 2-deoxy-2-[(difluoroacetyl)amino]-D-galactose; 2-deoxy-2-[(difluoroacetyl)amino]-galactose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-12-14 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 257.189 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SIZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5FR0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 SIZ N-DIFLUOROACETYL-D-GALACTOSAMINE PDB ? 2 SIZ N-difluoroacetyl-beta-D-galactosamine PDB ? 3 SIZ "2-deoxy-2-[(difluoroacetyl)amino]-beta-D-galactose" PDB ? 4 SIZ "2-deoxy-2-[(difluoroacetyl)amino]-D-galactose" PDB ? 5 SIZ "2-deoxy-2-[(difluoroacetyl)amino]-galactose" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SIZ F2 F2 F 0 1 N N N 33.315 3.094 -15.632 3.934 0.393 -1.455 F2 SIZ 1 SIZ C8 C8 C 0 1 N N N 32.815 2.759 -14.546 3.829 -0.201 -0.193 C8 SIZ 2 SIZ F1 F1 F 0 1 N N N 31.370 2.606 -14.684 4.706 0.433 0.695 F1 SIZ 3 SIZ C7 C7 C 0 1 N N N 33.459 1.444 -14.134 2.416 -0.063 0.312 C7 SIZ 4 SIZ O7 O7 O 0 1 N N N 34.647 1.468 -13.832 2.205 0.451 1.390 O7 SIZ 5 SIZ N2 N2 N 0 1 N N N 32.666 0.320 -14.103 1.387 -0.511 -0.434 N2 SIZ 6 SIZ C2 C2 C 0 1 N N R 33.216 -0.986 -13.659 0.013 -0.377 0.056 C2 SIZ 7 SIZ C3 C3 C 0 1 N N R 33.352 -1.003 -12.112 -0.869 -1.447 -0.593 C3 SIZ 8 SIZ O3 O3 O 0 1 N N N 32.044 -0.979 -11.437 -0.416 -2.744 -0.199 O3 SIZ 9 SIZ C4 C4 C 0 1 N N R 34.237 -2.259 -11.706 -2.316 -1.248 -0.133 C4 SIZ 10 SIZ O4 O4 O 0 1 N N N 33.550 -3.462 -12.075 -2.397 -1.434 1.282 O4 SIZ 11 SIZ C5 C5 C 0 1 N N R 35.543 -2.226 -12.455 -2.767 0.170 -0.490 C5 SIZ 12 SIZ C6 C6 C 0 1 N N N 36.524 -3.329 -12.016 -4.191 0.397 0.020 C6 SIZ 13 SIZ O6 O6 O 0 1 N N N 37.787 -2.945 -12.633 -4.654 1.678 -0.413 O6 SIZ 14 SIZ O5 O5 O 0 1 N N N 35.226 -2.415 -13.877 -1.886 1.116 0.121 O5 SIZ 15 SIZ C1 C1 C 0 1 N N R 34.603 -1.251 -14.345 -0.527 1.008 -0.308 C1 SIZ 16 SIZ O1 O1 O 0 1 N Y N 34.431 -1.514 -15.744 0.258 2.011 0.340 O1 SIZ 17 SIZ H81 H8 H 0 1 N N N 33.016 3.496 -13.754 4.088 -1.258 -0.266 H81 SIZ 18 SIZ HN2 H2 H 0 1 N N N 31.708 0.383 -14.383 1.556 -0.922 -1.296 HN2 SIZ 19 SIZ H2 HA H 0 1 N N N 32.527 -1.790 -13.956 -0.000 -0.501 1.139 H2 SIZ 20 SIZ H3 H3 H 0 1 N N N 33.913 -0.103 -11.819 -0.814 -1.356 -1.678 H3 SIZ 21 SIZ H1 H1 H 0 1 N N N 35.245 -0.371 -14.194 -0.474 1.147 -1.388 H1 SIZ 22 SIZ HO3 HB H 0 1 N Y N 32.173 -0.990 -10.496 -0.931 -3.472 -0.574 HO3 SIZ 23 SIZ H4 H4 H 0 1 N N N 34.424 -2.228 -10.622 -2.960 -1.972 -0.632 H4 SIZ 24 SIZ HO4 HC H 0 1 N Y N 34.077 -4.215 -11.833 -3.287 -1.322 1.643 HO4 SIZ 25 SIZ H5 H5 H 0 1 N N N 36.021 -1.246 -12.308 -2.743 0.298 -1.572 H5 SIZ 26 SIZ H61 H61C H 0 1 N N N 36.617 -3.356 -10.920 -4.846 -0.379 -0.375 H61 SIZ 27 SIZ H62 H62C H 0 1 N N N 36.194 -4.313 -12.381 -4.198 0.358 1.110 H62 SIZ 28 SIZ HO6 H6 H 0 1 N Y N 38.456 -3.582 -12.409 -5.553 1.889 -0.125 HO6 SIZ 29 SIZ HO1 HD H 0 1 N Y N 35.278 -1.672 -16.143 -0.028 2.916 0.154 HO1 SIZ 30 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SIZ F2 C8 SING N N 1 SIZ C8 F1 SING N N 2 SIZ C8 C7 SING N N 3 SIZ C7 O7 DOUB N N 4 SIZ C7 N2 SING N N 5 SIZ N2 C2 SING N N 6 SIZ C2 C3 SING N N 7 SIZ C2 C1 SING N N 8 SIZ C3 O3 SING N N 9 SIZ C3 C4 SING N N 10 SIZ C4 O4 SING N N 11 SIZ C4 C5 SING N N 12 SIZ C5 C6 SING N N 13 SIZ C5 O5 SING N N 14 SIZ C6 O6 SING N N 15 SIZ O5 C1 SING N N 16 SIZ C1 O1 SING N N 17 SIZ C8 H81 SING N N 18 SIZ N2 HN2 SING N N 19 SIZ C2 H2 SING N N 20 SIZ C3 H3 SING N N 21 SIZ C1 H1 SING N N 22 SIZ O3 HO3 SING N N 23 SIZ C4 H4 SING N N 24 SIZ O4 HO4 SING N N 25 SIZ C5 H5 SING N N 26 SIZ C6 H61 SING N N 27 SIZ C6 H62 SING N N 28 SIZ O6 HO6 SING N N 29 SIZ O1 HO1 SING N N 30 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SIZ InChI InChI 1.03 "InChI=1S/C8H13F2NO6/c9-6(10)7(15)11-3-5(14)4(13)2(1-12)17-8(3)16/h2-6,8,12-14,16H,1H2,(H,11,15)/t2-,3-,4+,5-,8-/m1/s1" SIZ InChIKey InChI 1.03 QWUDJWPZSGMAGG-UXDJRKLDSA-N SIZ SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](O)[C@H](NC(=O)C(F)F)[C@@H](O)[C@H]1O" SIZ SMILES CACTVS 3.385 "OC[CH]1O[CH](O)[CH](NC(=O)C(F)F)[CH](O)[CH]1O" SIZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)O)NC(=O)C(F)F)O)O)O" SIZ SMILES "OpenEye OEToolkits" 1.7.6 "C(C1C(C(C(C(O1)O)NC(=O)C(F)F)O)O)O" # _pdbx_chem_comp_identifier.comp_id SIZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.7.6 _pdbx_chem_comp_identifier.identifier "2,2-bis(fluoranyl)-N-[(2R,3R,4R,5R,6R)-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl]ethanamide" # _pdbx_chem_comp_related.comp_id SIZ _pdbx_chem_comp_related.related_comp_id NGA _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 SIZ C1 NGA C1 "Carbohydrate core" 2 SIZ C2 NGA C2 "Carbohydrate core" 3 SIZ C3 NGA C3 "Carbohydrate core" 4 SIZ C4 NGA C4 "Carbohydrate core" 5 SIZ C5 NGA C5 "Carbohydrate core" 6 SIZ C6 NGA C6 "Carbohydrate core" 7 SIZ C7 NGA C7 "Carbohydrate core" 8 SIZ C8 NGA C8 "Carbohydrate core" 9 SIZ N2 NGA N2 "Carbohydrate core" 10 SIZ O1 NGA O1 "Carbohydrate core" 11 SIZ O3 NGA O3 "Carbohydrate core" 12 SIZ O4 NGA O4 "Carbohydrate core" 13 SIZ O5 NGA O5 "Carbohydrate core" 14 SIZ O6 NGA O6 "Carbohydrate core" 15 SIZ O7 NGA O7 "Carbohydrate core" 16 SIZ H1 NGA H1 "Carbohydrate core" 17 SIZ HN2 NGA HN2 "Carbohydrate core" 18 SIZ H3 NGA H3 "Carbohydrate core" 19 SIZ H4 NGA H4 "Carbohydrate core" 20 SIZ H5 NGA H5 "Carbohydrate core" 21 SIZ HO6 NGA HO6 "Carbohydrate core" 22 SIZ H61 NGA H61 "Carbohydrate core" 23 SIZ H62 NGA H62 "Carbohydrate core" 24 SIZ H81 NGA H81 "Carbohydrate core" 25 SIZ H2 NGA H2 "Carbohydrate core" 26 SIZ HO3 NGA HO3 "Carbohydrate core" 27 SIZ HO4 NGA HO4 "Carbohydrate core" 28 SIZ HO1 NGA HO1 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support SIZ "CARBOHYDRATE ISOMER" D PDB ? SIZ "CARBOHYDRATE RING" pyranose PDB ? SIZ "CARBOHYDRATE ANOMER" beta PDB ? SIZ "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SIZ "Create component" 2015-12-14 EBI SIZ "Initial release" 2016-03-30 RCSB SIZ "Other modification" 2020-07-03 RCSB SIZ "Modify parent residue" 2020-07-17 RCSB SIZ "Modify name" 2020-07-17 RCSB SIZ "Modify synonyms" 2020-07-17 RCSB SIZ "Modify linking type" 2020-07-17 RCSB SIZ "Modify atom id" 2020-07-17 RCSB SIZ "Modify component atom id" 2020-07-17 RCSB SIZ "Modify leaving atom flag" 2020-07-17 RCSB ##