data_SJ3
# 
_chem_comp.id                                    SJ3 
_chem_comp.name                                  "(4R)-4-hydroxypentanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C5 H10 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-07-05 
_chem_comp.pdbx_modified_date                    2023-01-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        118.131 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SJ3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8DJZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SJ3 C05  C1  C 0 1 N N R 16.773 7.323 -7.407  -1.896 0.108  -0.347 C05  SJ3 1  
SJ3 C06  C2  C 0 1 N N N 18.599 7.955 -9.121  0.564  0.544  -0.319 C06  SJ3 2  
SJ3 C08  C3  C 0 1 N N N 17.801 7.270 -10.208 1.914  -0.045 -0.001 C08  SJ3 3  
SJ3 C04  C4  C 0 1 N N N 17.841 8.316 -7.828  -0.525 -0.489 -0.024 C04  SJ3 4  
SJ3 C07  C5  C 0 1 N N N 17.333 6.021 -6.869  -2.974 -0.963 -0.171 C07  SJ3 5  
SJ3 O01  O1  O 0 1 N N N 15.941 7.941 -6.417  -2.160 1.199  0.538  O01  SJ3 6  
SJ3 O02  O2  O 0 1 N N N 16.923 7.930 -10.802 1.997  -1.176 0.419  O02  SJ3 7  
SJ3 O03  O3  O 0 1 N N N 18.079 6.082 -10.461 3.025  0.685  -0.183 O03  SJ3 8  
SJ3 H051 H1  H 0 0 N N N 16.162 7.089 -8.291  -1.903 0.466  -1.376 H051 SJ3 9  
SJ3 H061 H2  H 0 0 N N N 19.429 7.287 -8.846  0.400  1.429  0.295  H061 SJ3 10 
SJ3 H062 H3  H 0 0 N N N 19.003 8.888 -9.542  0.527  0.820  -1.372 H062 SJ3 11 
SJ3 H042 H4  H 0 0 N N N 18.576 8.392 -7.013  -0.488 -0.766 1.030  H042 SJ3 12 
SJ3 H041 H5  H 0 0 N N N 17.358 9.293 -7.978  -0.362 -1.375 -0.637 H041 SJ3 13 
SJ3 H073 H6  H 0 0 N N N 16.505 5.354 -6.586  -2.773 -1.795 -0.845 H073 SJ3 14 
SJ3 H072 H7  H 0 0 N N N 17.944 5.537 -7.645  -2.967 -1.320 0.859  H072 SJ3 15 
SJ3 H071 H8  H 0 0 N N N 17.956 6.227 -5.986  -3.951 -0.537 -0.401 H071 SJ3 16 
SJ3 H011 H9  H 0 0 N N N 15.267 7.330 -6.143  -3.015 1.628  0.390  H011 SJ3 17 
SJ3 H1   H10 H 0 1 N N N 17.524 5.769 -11.166 3.868  0.265  0.035  H1   SJ3 18 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SJ3 O02 C08  DOUB N N 1  
SJ3 O03 C08  SING N N 2  
SJ3 C08 C06  SING N N 3  
SJ3 C06 C04  SING N N 4  
SJ3 C04 C05  SING N N 5  
SJ3 C05 C07  SING N N 6  
SJ3 C05 O01  SING N N 7  
SJ3 C05 H051 SING N N 8  
SJ3 C06 H061 SING N N 9  
SJ3 C06 H062 SING N N 10 
SJ3 C04 H042 SING N N 11 
SJ3 C04 H041 SING N N 12 
SJ3 C07 H073 SING N N 13 
SJ3 C07 H072 SING N N 14 
SJ3 C07 H071 SING N N 15 
SJ3 O01 H011 SING N N 16 
SJ3 O03 H1   SING N N 17 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SJ3 SMILES           ACDLabs              12.01 "O=C(O)CCC(C)O"                                                       
SJ3 InChI            InChI                1.06  "InChI=1S/C5H10O3/c1-4(6)2-3-5(7)8/h4,6H,2-3H2,1H3,(H,7,8)/t4-/m1/s1" 
SJ3 InChIKey         InChI                1.06  FMHKPLXYWVCLME-SCSAIBSYSA-N                                           
SJ3 SMILES_CANONICAL CACTVS               3.385 "C[C@@H](O)CCC(O)=O"                                                  
SJ3 SMILES           CACTVS               3.385 "C[CH](O)CCC(O)=O"                                                    
SJ3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CCC(=O)O)O"                                                   
SJ3 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(CCC(=O)O)O"                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SJ3 "SYSTEMATIC NAME" ACDLabs              12.01 "(4R)-4-hydroxypentanoic acid"     
SJ3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4~{R})-4-oxidanylpentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SJ3 "Create component" 2022-07-05 RCSB 
SJ3 "Initial release"  2023-01-11 RCSB 
#