data_SJF # _chem_comp.id SJF _chem_comp.name "(1S,3aR,6aS)-2-[(3,4-dichlorophenoxy)acetyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}octahydrocyclopenta[c]pyrrole-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H29 Cl2 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-28 _chem_comp.pdbx_modified_date 2024-08-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 498.399 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SJF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8TY3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SJF C1 C1 C 0 1 N N N N N N -6.080 -14.302 -18.093 1.057 -4.827 0.262 C1 SJF 1 SJF C10 C2 C 0 1 N N N N N N -6.160 -13.102 -17.155 1.513 -4.637 1.720 C10 SJF 2 SJF C11 C3 C 0 1 N N N N N N -9.520 -17.705 -18.673 -1.853 -0.207 0.197 C11 SJF 3 SJF C12 C4 C 0 1 N N N N N N -9.699 -16.409 -17.905 -0.355 -0.101 0.325 C12 SJF 4 SJF C13 C5 C 0 1 N N N N N N -7.910 -15.441 -19.332 -0.102 -2.595 0.202 C13 SJF 5 SJF C14 C6 C 0 1 N N S N N N -9.120 -14.060 -17.696 1.866 -1.257 0.440 C14 SJF 6 SJF C15 C7 C 0 1 N N N N N N -10.528 -13.539 -17.831 2.492 -0.467 -0.681 C15 SJF 7 SJF C16 C8 C 0 1 N N R N N N -7.182 -14.135 -19.132 1.083 -3.414 -0.353 C16 SJF 8 SJF C17 C9 C 0 1 N N S N N N -12.419 -12.432 -16.783 4.379 0.714 -1.670 C17 SJF 9 SJF C19 C10 C 0 1 N N N N N N -13.301 -13.203 -15.782 5.522 1.567 -1.116 C19 SJF 10 SJF C2 C11 C 0 1 N N N N N N -7.368 -12.284 -17.612 2.320 -3.331 1.764 C2 SJF 11 SJF C20 C12 C 0 1 N N S N N N -13.455 -14.660 -16.213 4.957 2.612 -0.151 C20 SJF 12 SJF C21 C13 C 0 1 N N N N N N -14.288 -14.797 -17.480 6.090 3.508 0.400 C21 SJF 13 SJF C22 C14 C 0 1 N N N N N N -15.085 -16.084 -17.284 6.450 2.787 1.718 C22 SJF 14 SJF C24 C15 C 0 1 N N N N N N -14.230 -15.486 -15.229 4.383 1.942 1.078 C24 SJF 15 SJF C3 C16 C 0 1 Y N N N N N -11.828 -18.500 -18.901 -3.780 1.184 0.121 C3 SJF 16 SJF C34 C17 C 0 1 N N S N N N -8.177 -13.192 -18.515 2.301 -2.733 0.346 C34 SJF 17 SJF C4 C18 C 0 1 Y N N N N N -12.795 -19.495 -18.747 -4.403 2.424 0.142 C4 SJF 18 SJF C5 C19 C 0 1 Y N N N N N -14.065 -19.334 -19.301 -5.778 2.507 0.034 C5 SJF 19 SJF C6 C20 C 0 1 Y N N N N N -14.360 -18.169 -20.022 -6.534 1.355 -0.093 C6 SJF 20 SJF C7 C21 C 0 1 Y N N N N N -13.391 -17.192 -20.173 -5.914 0.117 -0.114 C7 SJF 21 SJF C8 C22 C 0 1 N N N N N N -12.382 -10.939 -16.440 4.927 -0.247 -2.727 C8 SJF 22 SJF C9 C23 C 0 1 Y N N N N N -12.137 -17.351 -19.614 -4.537 0.031 -0.012 C9 SJF 23 SJF N13 N1 N 0 1 N N N N N N -8.946 -15.388 -18.301 0.402 -1.216 0.322 N13 SJF 24 SJF N16 N2 N 0 1 N N N N N N -11.052 -12.938 -16.767 3.771 -0.054 -0.581 N16 SJF 25 SJF N23 N3 N 0 1 N N N N N N -15.052 -16.326 -15.854 5.236 2.060 2.110 N23 SJF 26 SJF O1 O1 O 0 1 N N N N N N -10.570 -18.635 -18.363 -2.427 1.102 0.226 O1 SJF 27 SJF O26 O2 O 0 1 N N N N N N -14.108 -15.362 -14.023 3.309 1.380 1.125 O26 SJF 28 SJF O33 O3 O 0 1 N N N N N N -10.503 -16.309 -16.991 0.169 0.988 0.430 O33 SJF 29 SJF O38 O4 O 0 1 N N N N N N -11.132 -13.667 -18.885 1.845 -0.204 -1.672 O38 SJF 30 SJF O9 O5 O 0 1 N N N N N N -13.680 -10.347 -16.631 5.992 -1.016 -2.166 O9 SJF 31 SJF CL1 CL1 CL 0 0 N N N N N N -13.724 -15.678 -21.071 -6.864 -1.327 -0.274 CL1 SJF 32 SJF CL2 CL2 CL 0 0 N N N N N N -15.981 -17.921 -20.765 -8.261 1.462 -0.227 CL2 SJF 33 SJF H1 H1 H 0 1 N N N N N N -6.233 -15.233 -17.528 1.747 -5.484 -0.268 H1 SJF 34 SJF H2 H2 H 0 1 N N N N N N -5.097 -14.330 -18.587 0.047 -5.237 0.231 H2 SJF 35 SJF H3 H3 H 0 1 N N N N N N -6.298 -13.438 -16.117 0.645 -4.561 2.375 H3 SJF 36 SJF H4 H4 H 0 1 N N N N N N -5.242 -12.500 -17.227 2.140 -5.474 2.028 H4 SJF 37 SJF H5 H5 H 0 1 N N N N N N -8.552 -18.152 -18.404 -2.104 -0.693 -0.745 H5 SJF 38 SJF H6 H6 H 0 1 N N N N N N -9.537 -17.490 -19.752 -2.247 -0.795 1.026 H6 SJF 39 SJF H7 H7 H 0 1 N N N N N N -8.353 -15.499 -20.337 -0.943 -2.631 -0.491 H7 SJF 40 SJF H8 H8 H 0 1 N N N N N N -7.238 -16.298 -19.177 -0.400 -2.976 1.179 H8 SJF 41 SJF H9 H9 H 0 1 N N N N N N -8.812 -14.065 -16.640 2.171 -0.842 1.400 H9 SJF 42 SJF H10 H10 H 0 1 N N N N N N -6.784 -13.743 -20.080 1.143 -3.405 -1.442 H10 SJF 43 SJF H11 H11 H 0 1 N N N N N N -12.846 -12.551 -17.790 3.628 1.362 -2.122 H11 SJF 44 SJF H12 H12 H 0 1 N N N N N N -12.834 -13.168 -14.787 6.229 0.928 -0.586 H12 SJF 45 SJF H13 H13 H 0 1 N N N N N N -14.294 -12.732 -15.738 6.032 2.070 -1.938 H13 SJF 46 SJF H14 H14 H 0 1 N N N N N N -7.037 -11.392 -18.165 1.860 -2.635 2.466 H14 SJF 47 SJF H15 H15 H 0 1 N N N N N N -7.969 -11.975 -16.744 3.346 -3.539 2.068 H15 SJF 48 SJF H16 H16 H 0 1 N N N N N N -12.461 -15.103 -16.374 4.197 3.216 -0.646 H16 SJF 49 SJF H17 H17 H 0 1 N N N N N N -13.639 -14.874 -18.364 6.941 3.524 -0.281 H17 SJF 50 SJF H18 H18 H 0 1 N N N N N N -14.963 -13.936 -17.595 5.729 4.518 0.594 H18 SJF 51 SJF H19 H19 H 0 1 N N N N N N -16.121 -15.955 -17.631 7.271 2.090 1.555 H19 SJF 52 SJF H20 H20 H 0 1 N N N N N N -14.616 -16.917 -17.829 6.718 3.514 2.485 H20 SJF 53 SJF H21 H21 H 0 1 N N N N N N -8.721 -12.619 -19.280 3.237 -2.868 -0.196 H21 SJF 54 SJF H22 H22 H 0 1 N N N N N N -12.559 -20.394 -18.196 -3.814 3.323 0.242 H22 SJF 55 SJF H23 H23 H 0 1 N N N N N N -14.815 -20.101 -19.175 -6.263 3.471 0.051 H23 SJF 56 SJF H24 H24 H 0 1 N N N N N N -12.079 -10.816 -15.390 4.131 -0.915 -3.058 H24 SJF 57 SJF H25 H25 H 0 1 N N N N N N -11.654 -10.435 -17.093 5.300 0.323 -3.578 H25 SJF 58 SJF H26 H26 H 0 1 N N N N N N -11.394 -16.577 -19.733 -4.054 -0.935 -0.029 H26 SJF 59 SJF H27 H27 H 0 1 N N N N N N -10.498 -12.831 -15.941 4.288 -0.264 0.212 H27 SJF 60 SJF H28 H28 H 0 1 N N N N N N -15.583 -17.038 -15.394 5.072 1.709 2.999 H28 SJF 61 SJF H29 H29 H 0 1 N N N N N N -13.642 -9.423 -16.415 6.388 -1.648 -2.781 H29 SJF 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SJF CL1 C7 SING N N 1 SJF CL2 C6 SING N N 2 SJF C7 C6 DOUB Y N 3 SJF C7 C9 SING Y N 4 SJF C6 C5 SING Y N 5 SJF C9 C3 DOUB Y N 6 SJF C13 C16 SING N N 7 SJF C13 N13 SING N N 8 SJF C5 C4 DOUB Y N 9 SJF C16 C34 SING N N 10 SJF C16 C1 SING N N 11 SJF C3 C4 SING Y N 12 SJF C3 O1 SING N N 13 SJF O38 C15 DOUB N N 14 SJF C11 O1 SING N N 15 SJF C11 C12 SING N N 16 SJF C34 C14 SING N N 17 SJF C34 C2 SING N N 18 SJF N13 C12 SING N N 19 SJF N13 C14 SING N N 20 SJF C1 C10 SING N N 21 SJF C12 O33 DOUB N N 22 SJF C15 C14 SING N N 23 SJF C15 N16 SING N N 24 SJF C2 C10 SING N N 25 SJF C21 C22 SING N N 26 SJF C21 C20 SING N N 27 SJF C22 N23 SING N N 28 SJF C17 N16 SING N N 29 SJF C17 C8 SING N N 30 SJF C17 C19 SING N N 31 SJF O9 C8 SING N N 32 SJF C20 C19 SING N N 33 SJF C20 C24 SING N N 34 SJF N23 C24 SING N N 35 SJF C24 O26 DOUB N N 36 SJF C1 H1 SING N N 37 SJF C1 H2 SING N N 38 SJF C10 H3 SING N N 39 SJF C10 H4 SING N N 40 SJF C11 H5 SING N N 41 SJF C11 H6 SING N N 42 SJF C13 H7 SING N N 43 SJF C13 H8 SING N N 44 SJF C14 H9 SING N N 45 SJF C16 H10 SING N N 46 SJF C17 H11 SING N N 47 SJF C19 H12 SING N N 48 SJF C19 H13 SING N N 49 SJF C2 H14 SING N N 50 SJF C2 H15 SING N N 51 SJF C20 H16 SING N N 52 SJF C21 H17 SING N N 53 SJF C21 H18 SING N N 54 SJF C22 H19 SING N N 55 SJF C22 H20 SING N N 56 SJF C34 H21 SING N N 57 SJF C4 H22 SING N N 58 SJF C5 H23 SING N N 59 SJF C8 H24 SING N N 60 SJF C8 H25 SING N N 61 SJF C9 H26 SING N N 62 SJF N16 H27 SING N N 63 SJF N23 H28 SING N N 64 SJF O9 H29 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SJF SMILES ACDLabs 12.01 "O=C1NCCC1CC(CO)NC(=O)C1C2CCCC2CN1C(=O)COc1ccc(Cl)c(Cl)c1" SJF InChI InChI 1.06 "InChI=1S/C23H29Cl2N3O5/c24-18-5-4-16(9-19(18)25)33-12-20(30)28-10-14-2-1-3-17(14)21(28)23(32)27-15(11-29)8-13-6-7-26-22(13)31/h4-5,9,13-15,17,21,29H,1-3,6-8,10-12H2,(H,26,31)(H,27,32)/t13-,14-,15-,17-,21-/m0/s1" SJF InChIKey InChI 1.06 DSVCEMXKUZHNPU-ICWLNENESA-N SJF SMILES_CANONICAL CACTVS 3.385 "OC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H]2[C@H]3CCC[C@H]3CN2C(=O)COc4ccc(Cl)c(Cl)c4" SJF SMILES CACTVS 3.385 "OC[CH](C[CH]1CCNC1=O)NC(=O)[CH]2[CH]3CCC[CH]3CN2C(=O)COc4ccc(Cl)c(Cl)c4" SJF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1OCC(=O)N2C[C@@H]3CCC[C@@H]3[C@H]2C(=O)N[C@@H](C[C@@H]4CCNC4=O)CO)Cl)Cl" SJF SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1OCC(=O)N2CC3CCCC3C2C(=O)NC(CC4CCNC4=O)CO)Cl)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SJF "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,3aR,6aS)-2-[(3,4-dichlorophenoxy)acetyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}octahydrocyclopenta[c]pyrrole-1-carboxamide" SJF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S},3~{a}~{S},6~{a}~{R})-2-[2-[3,4-bis(chloranyl)phenoxy]ethanoyl]-~{N}-[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-3,3~{a},4,5,6,6~{a}-hexahydro-1~{H}-cyclopenta[c]pyrrole-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SJF "Create component" 2023-08-28 RCSB SJF "Initial release" 2024-08-28 RCSB #