data_SJG
#
_chem_comp.id SJG
_chem_comp.name "ethyl ~{N}-[6-methyl-5-[3-[2-[[(3~{S})-piperidin-3-yl]amino]pyrimidin-4-yl]pyridin-2-yl]oxy-naphthalen-1-yl]carbamate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H30 N6 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-10
_chem_comp.pdbx_modified_date 2020-12-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 498.576
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SJG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6W39
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SJG C4 C1 C 0 1 N N N 109.671 39.394 29.695 -6.143 1.270 0.450 C4 SJG 1
SJG C14 C2 C 0 1 Y N N 109.464 43.678 30.687 -2.172 -0.531 -2.875 C14 SJG 2
SJG C11 C3 C 0 1 Y N N 107.652 43.322 28.621 -1.644 -0.256 -0.162 C11 SJG 3
SJG C7 C4 C 0 1 Y N N 108.589 41.096 28.218 -3.841 0.758 0.153 C7 SJG 4
SJG C8 C5 C 0 1 Y N N 107.680 40.952 27.191 -3.560 0.891 1.495 C8 SJG 5
SJG C9 C6 C 0 1 Y N N 106.763 41.959 26.878 -2.346 0.452 2.015 C9 SJG 6
SJG C10 C7 C 0 1 Y N N 106.734 43.129 27.575 -1.398 -0.107 1.212 C10 SJG 7
SJG C12 C8 C 0 1 Y N N 108.582 42.302 28.945 -2.879 0.178 -0.702 C12 SJG 8
SJG C13 C9 C 0 1 Y N N 109.486 42.514 29.989 -3.123 0.028 -2.077 C13 SJG 9
SJG C1 C10 C 0 1 N N N 111.521 36.376 30.711 -9.626 2.460 0.212 C1 SJG 10
SJG C2 C11 C 0 1 N N N 110.652 37.622 30.939 -8.414 1.839 0.910 C2 SJG 11
SJG O3 O1 O 0 1 N N N 110.609 38.431 29.727 -7.294 1.793 -0.012 O3 SJG 12
SJG O5 O2 O 0 1 N N N 109.021 39.594 30.724 -6.075 0.863 1.593 O5 SJG 13
SJG N6 N1 N 0 1 N N N 109.494 40.055 28.516 -5.066 1.192 -0.357 N6 SJG 14
SJG C15 C12 C 0 1 Y N N 108.550 44.680 30.393 -0.958 -0.964 -2.350 C15 SJG 15
SJG C16 C13 C 0 1 Y N N 107.655 44.521 29.368 -0.684 -0.836 -1.018 C16 SJG 16
SJG O17 O3 O 0 1 N N N 106.702 45.436 29.056 0.508 -1.258 -0.521 O17 SJG 17
SJG C18 C14 C 0 1 Y N N 106.919 46.726 28.804 0.596 -2.538 -0.083 C18 SJG 18
SJG C19 C15 C 0 1 Y N N 105.885 47.658 29.026 1.808 -3.013 0.437 C19 SJG 19
SJG C20 C16 C 0 1 Y N N 106.177 48.989 28.725 1.878 -4.334 0.883 C20 SJG 20
SJG C21 C17 C 0 1 Y N N 107.442 49.318 28.246 0.741 -5.121 0.791 C21 SJG 21
SJG C22 C18 C 0 1 Y N N 108.393 48.338 28.061 -0.418 -4.581 0.267 C22 SJG 22
SJG N23 N2 N 0 1 Y N N 108.098 47.082 28.341 -0.462 -3.328 -0.143 N23 SJG 23
SJG C24 C19 C 0 1 Y N N 104.515 47.321 29.532 2.994 -2.129 0.511 C24 SJG 24
SJG C25 C20 C 0 1 Y N N 104.056 46.000 29.749 4.202 -2.604 1.030 C25 SJG 25
SJG C26 C21 C 0 1 Y N N 102.765 45.784 30.214 5.283 -1.742 1.079 C26 SJG 26
SJG N27 N3 N 0 1 Y N N 101.979 46.840 30.424 5.143 -0.502 0.637 N27 SJG 27
SJG C28 C22 C 0 1 Y N N 102.428 48.085 30.226 3.986 -0.078 0.150 C28 SJG 28
SJG N29 N4 N 0 1 Y N N 103.674 48.328 29.791 2.928 -0.871 0.080 N29 SJG 29
SJG N30 N5 N 0 1 N N N 101.579 49.163 30.480 3.882 1.226 -0.301 N30 SJG 30
SJG C31 C23 C 0 1 N N S 102.005 50.562 30.273 5.042 2.118 -0.237 C31 SJG 31
SJG C33 C24 C 0 1 N N N 100.765 51.443 30.110 4.902 3.216 -1.295 C33 SJG 32
SJG C34 C25 C 0 1 N N N 101.221 52.894 29.929 6.088 4.178 -1.182 C34 SJG 33
SJG C35 C26 C 0 1 N N N 101.954 53.294 31.209 6.133 4.760 0.233 C35 SJG 34
SJG N36 N6 N 0 1 N N N 103.148 52.451 31.368 6.268 3.670 1.208 N36 SJG 35
SJG C37 C27 C 0 1 N N N 102.803 51.027 31.489 5.117 2.760 1.150 C37 SJG 36
SJG C38 C28 C 0 1 N N N 108.605 45.931 31.240 0.068 -1.584 -3.264 C38 SJG 37
SJG H1 H1 H 0 1 N N N 110.173 43.827 31.488 -2.365 -0.644 -3.932 H1 SJG 38
SJG H2 H2 H 0 1 N N N 107.677 40.039 26.615 -4.293 1.334 2.153 H2 SJG 39
SJG H3 H3 H 0 1 N N N 106.064 41.807 26.069 -2.147 0.566 3.070 H3 SJG 40
SJG H4 H4 H 0 1 N N N 106.016 43.897 27.327 -0.459 -0.436 1.632 H4 SJG 41
SJG H5 H5 H 0 1 N N N 110.205 41.749 30.242 -4.061 0.356 -2.499 H5 SJG 42
SJG H6 H6 H 0 1 N N N 111.547 35.773 31.631 -9.379 3.471 -0.111 H6 SJG 43
SJG H7 H7 H 0 1 N N N 111.096 35.777 29.892 -9.894 1.856 -0.655 H7 SJG 44
SJG H8 H8 H 0 1 N N N 112.543 36.685 30.447 -10.466 2.494 0.905 H8 SJG 45
SJG H9 H9 H 0 1 N N N 111.078 38.218 31.759 -8.146 2.442 1.778 H9 SJG 46
SJG H10 H10 H 0 1 N N N 109.631 37.310 31.205 -8.661 0.827 1.234 H10 SJG 47
SJG H11 H11 H 0 1 N N N 110.083 39.764 27.763 -5.142 1.439 -1.292 H11 SJG 48
SJG H12 H12 H 0 1 N N N 105.429 49.756 28.862 2.795 -4.734 1.289 H12 SJG 49
SJG H13 H13 H 0 1 N N N 107.679 50.347 28.018 0.760 -6.147 1.127 H13 SJG 50
SJG H14 H14 H 0 1 N N N 109.374 48.596 27.689 -1.305 -5.194 0.196 H14 SJG 51
SJG H15 H15 H 0 1 N N N 104.708 45.162 29.553 4.290 -3.621 1.384 H15 SJG 52
SJG H16 H16 H 0 1 N N N 102.406 44.783 30.401 6.231 -2.077 1.474 H16 SJG 53
SJG H17 H17 H 0 1 N N N 100.774 49.027 29.902 3.040 1.550 -0.660 H17 SJG 54
SJG H32 H18 H 0 1 N N N 102.631 50.639 29.372 5.951 1.547 -0.424 H32 SJG 55
SJG H18 H19 H 0 1 N N N 100.132 51.362 31.006 4.891 2.766 -2.288 H18 SJG 56
SJG H19 H20 H 0 1 N N N 100.194 51.120 29.227 3.972 3.762 -1.133 H19 SJG 57
SJG H20 H21 H 0 1 N N N 101.898 52.972 29.066 7.014 3.639 -1.383 H20 SJG 58
SJG H21 H22 H 0 1 N N N 100.350 53.547 29.772 5.972 4.986 -1.904 H21 SJG 59
SJG H22 H23 H 0 1 N N N 102.255 54.350 31.145 6.985 5.434 0.321 H22 SJG 60
SJG H23 H24 H 0 1 N N N 101.288 53.154 32.073 5.212 5.310 0.429 H23 SJG 61
SJG H24 H25 H 0 1 N N N 103.739 52.574 30.570 7.133 3.169 1.072 H24 SJG 62
SJG H26 H27 H 0 1 N N N 102.199 50.877 32.396 4.202 3.319 1.342 H26 SJG 63
SJG H27 H28 H 0 1 N N N 103.728 50.436 31.562 5.232 1.982 1.904 H27 SJG 64
SJG H28 H29 H 0 1 N N N 107.940 45.816 32.109 0.722 -0.805 -3.657 H28 SJG 65
SJG H29 H30 H 0 1 N N N 109.636 46.094 31.587 0.661 -2.308 -2.705 H29 SJG 66
SJG H30 H31 H 0 1 N N N 108.279 46.794 30.641 -0.436 -2.086 -4.089 H30 SJG 67
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SJG C9 C8 DOUB Y N 1
SJG C9 C10 SING Y N 2
SJG C8 C7 SING Y N 3
SJG C10 C11 DOUB Y N 4
SJG C22 C21 DOUB Y N 5
SJG C22 N23 SING Y N 6
SJG C7 N6 SING N N 7
SJG C7 C12 DOUB Y N 8
SJG C21 C20 SING Y N 9
SJG N23 C18 DOUB Y N 10
SJG N6 C4 SING N N 11
SJG C11 C12 SING Y N 12
SJG C11 C16 SING Y N 13
SJG C20 C19 DOUB Y N 14
SJG C18 C19 SING Y N 15
SJG C18 O17 SING N N 16
SJG C12 C13 SING Y N 17
SJG C19 C24 SING N N 18
SJG O17 C16 SING N N 19
SJG C16 C15 DOUB Y N 20
SJG C24 C25 DOUB Y N 21
SJG C24 N29 SING Y N 22
SJG C4 O3 SING N N 23
SJG C4 O5 DOUB N N 24
SJG O3 C2 SING N N 25
SJG C25 C26 SING Y N 26
SJG N29 C28 DOUB Y N 27
SJG C34 C33 SING N N 28
SJG C34 C35 SING N N 29
SJG C13 C14 DOUB Y N 30
SJG C33 C31 SING N N 31
SJG C26 N27 DOUB Y N 32
SJG C28 N27 SING Y N 33
SJG C28 N30 SING N N 34
SJG C31 N30 SING N N 35
SJG C31 C37 SING N N 36
SJG C15 C14 SING Y N 37
SJG C15 C38 SING N N 38
SJG C1 C2 SING N N 39
SJG C35 N36 SING N N 40
SJG N36 C37 SING N N 41
SJG C14 H1 SING N N 42
SJG C8 H2 SING N N 43
SJG C9 H3 SING N N 44
SJG C10 H4 SING N N 45
SJG C13 H5 SING N N 46
SJG C1 H6 SING N N 47
SJG C1 H7 SING N N 48
SJG C1 H8 SING N N 49
SJG C2 H9 SING N N 50
SJG C2 H10 SING N N 51
SJG N6 H11 SING N N 52
SJG C20 H12 SING N N 53
SJG C21 H13 SING N N 54
SJG C22 H14 SING N N 55
SJG C25 H15 SING N N 56
SJG C26 H16 SING N N 57
SJG N30 H17 SING N N 58
SJG C31 H32 SING N N 59
SJG C33 H18 SING N N 60
SJG C33 H19 SING N N 61
SJG C34 H20 SING N N 62
SJG C34 H21 SING N N 63
SJG C35 H22 SING N N 64
SJG C35 H23 SING N N 65
SJG N36 H24 SING N N 66
SJG C37 H26 SING N N 67
SJG C37 H27 SING N N 68
SJG C38 H28 SING N N 69
SJG C38 H29 SING N N 70
SJG C38 H30 SING N N 71
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SJG InChI InChI 1.03 "InChI=1S/C28H30N6O3/c1-3-36-28(35)34-23-10-4-8-21-20(23)12-11-18(2)25(21)37-26-22(9-6-15-30-26)24-13-16-31-27(33-24)32-19-7-5-14-29-17-19/h4,6,8-13,15-16,19,29H,3,5,7,14,17H2,1-2H3,(H,34,35)(H,31,32,33)/t19-/m0/s1"
SJG InChIKey InChI 1.03 FAXJSCJHZCBHCM-IBGZPJMESA-N
SJG SMILES_CANONICAL CACTVS 3.385 "CCOC(=O)Nc1cccc2c(Oc3ncccc3c4ccnc(N[C@H]5CCCNC5)n4)c(C)ccc12"
SJG SMILES CACTVS 3.385 "CCOC(=O)Nc1cccc2c(Oc3ncccc3c4ccnc(N[CH]5CCCNC5)n4)c(C)ccc12"
SJG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC(=O)Nc1cccc2c1ccc(c2Oc3c(cccn3)c4ccnc(n4)N[C@H]5CCCNC5)C"
SJG SMILES "OpenEye OEToolkits" 2.0.7 "CCOC(=O)Nc1cccc2c1ccc(c2Oc3c(cccn3)c4ccnc(n4)NC5CCCNC5)C"
#
_pdbx_chem_comp_identifier.comp_id SJG
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "ethyl ~{N}-[6-methyl-5-[3-[2-[[(3~{S})-piperidin-3-yl]amino]pyrimidin-4-yl]pyridin-2-yl]oxy-naphthalen-1-yl]carbamate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SJG "Create component" 2020-03-10 RCSB
SJG "Initial release" 2020-12-09 RCSB
##