data_SJI # _chem_comp.id SJI _chem_comp.name "N-ethyl-1-{(3S,4S)-1-[(1-hydroxycyclohexyl)methyl]-3-methylpiperidin-4-yl}-2-methyl-1H-benzimidazole-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H36 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-06 _chem_comp.pdbx_modified_date 2023-01-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 412.568 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SJI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8DKB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SJI C32 C1 C 0 1 N N N 9.598 17.083 -13.424 1.208 -4.863 -0.094 C32 SJI 1 SJI N3 N1 N 0 1 N N N 15.699 14.335 -9.554 4.990 2.697 0.061 N3 SJI 2 SJI C4 C2 C 0 1 N N N 15.558 15.643 -9.318 5.182 1.369 -0.061 C4 SJI 3 SJI C7 C3 C 0 1 Y N N 14.058 17.624 -9.433 2.736 0.958 0.175 C7 SJI 4 SJI C6 C4 C 0 1 Y N N 14.292 16.292 -9.781 4.029 0.448 -0.005 C6 SJI 5 SJI C9 C5 C 0 1 Y N N 12.194 17.690 -10.898 1.844 -1.256 0.107 C9 SJI 6 SJI C13 C6 C 0 1 Y N N 10.734 17.037 -12.468 1.746 -3.456 -0.048 C13 SJI 7 SJI C20 C7 C 0 1 N N N 10.603 21.922 -11.918 -2.595 -1.358 -0.618 C20 SJI 8 SJI C21 C8 C 0 1 N N S 11.375 20.593 -12.006 -1.083 -1.453 -0.832 C21 SJI 9 SJI C8 C9 C 0 1 Y N N 12.999 18.333 -9.972 1.663 0.117 0.232 C8 SJI 10 SJI C18 C10 C 0 1 N N N 9.075 21.068 -10.259 -2.325 -1.552 1.783 C18 SJI 11 SJI C26 C11 C 0 1 N N N 10.934 25.020 -9.815 -6.196 1.047 0.354 C26 SJI 12 SJI C1 C12 C 0 1 N N N 16.309 12.189 -8.584 5.645 5.051 0.169 C1 SJI 13 SJI C2 C13 C 0 1 N N N 16.787 13.527 -9.006 6.134 3.611 0.006 C2 SJI 14 SJI O5 O1 O 0 1 N N N 16.458 16.316 -8.822 6.304 0.928 -0.217 O5 SJI 15 SJI C10 C14 C 0 1 Y N N 12.401 16.363 -11.266 3.134 -1.785 -0.079 C10 SJI 16 SJI C11 C15 C 0 1 Y N N 13.447 15.643 -10.684 4.229 -0.923 -0.132 C11 SJI 17 SJI N12 N2 N 0 1 Y N N 11.482 15.982 -12.249 3.001 -3.134 -0.166 N12 SJI 18 SJI N14 N3 N 0 1 Y N N 11.114 18.115 -11.679 0.990 -2.337 0.122 N14 SJI 19 SJI C15 C16 C 0 1 N N S 10.453 19.441 -11.620 -0.465 -2.291 0.290 C15 SJI 20 SJI C17 C17 C 0 1 N N N 9.806 19.726 -10.271 -0.804 -1.653 1.639 C17 SJI 21 SJI N19 N4 N 0 1 N N N 9.972 22.173 -10.612 -2.868 -0.740 0.686 N19 SJI 22 SJI C23 C18 C 0 1 N N N 12.047 20.443 -13.365 -0.800 -2.117 -2.181 C23 SJI 23 SJI C24 C19 C 0 1 N N N 9.190 23.413 -10.653 -4.307 -0.506 0.867 C24 SJI 24 SJI C25 C20 C 0 1 N N N 9.517 24.476 -9.621 -4.729 0.725 0.062 C25 SJI 25 SJI C27 C21 C 0 1 N N N 11.292 26.292 -9.050 -6.618 2.278 -0.451 C27 SJI 26 SJI C28 C22 C 0 1 N N N 10.253 27.381 -9.274 -5.745 3.470 -0.056 C28 SJI 27 SJI C29 C23 C 0 1 N N N 8.851 26.876 -8.931 -4.278 3.148 -0.349 C29 SJI 28 SJI C30 C24 C 0 1 N N N 8.506 25.615 -9.725 -3.856 1.917 0.457 C30 SJI 29 SJI O31 O2 O 0 1 N N N 9.390 23.899 -8.304 -4.569 0.459 -1.333 O31 SJI 30 SJI H1 H1 H 0 1 N N N 9.488 16.103 -13.911 1.260 -5.305 0.900 H1 SJI 31 SJI H2 H2 H 0 1 N N N 8.673 17.329 -12.882 0.171 -4.844 -0.430 H2 SJI 32 SJI H3 H3 H 0 1 N N N 9.792 17.852 -14.187 1.804 -5.457 -0.788 H3 SJI 33 SJI H4 H4 H 0 1 N N N 15.023 13.884 -10.137 4.095 3.049 0.185 H4 SJI 34 SJI H5 H5 H 0 1 N N N 14.717 18.111 -8.729 2.588 2.023 0.273 H5 SJI 35 SJI H6 H6 H 0 1 N N N 11.306 22.743 -12.124 -3.037 -0.749 -1.407 H6 SJI 36 SJI H7 H7 H 0 1 N N N 9.815 21.913 -12.685 -3.029 -2.357 -0.644 H7 SJI 37 SJI H8 H8 H 0 1 N N N 12.174 20.635 -11.252 -0.650 -0.452 -0.820 H8 SJI 38 SJI H9 H9 H 0 1 N N N 12.806 19.355 -9.680 0.670 0.519 0.374 H9 SJI 39 SJI H10 H10 H 0 1 N N N 8.669 21.245 -9.252 -2.760 -2.550 1.745 H10 SJI 40 SJI H11 H11 H 0 1 N N N 8.250 21.032 -10.985 -2.570 -1.084 2.736 H11 SJI 41 SJI H12 H12 H 0 1 N N N 11.638 24.234 -9.503 -6.818 0.198 0.072 H12 SJI 42 SJI H13 H13 H 0 1 N N N 11.067 25.227 -10.887 -6.318 1.250 1.418 H13 SJI 43 SJI H14 H14 H 0 1 N N N 17.151 11.610 -8.178 6.496 5.731 0.128 H14 SJI 44 SJI H15 H15 H 0 1 N N N 15.536 12.303 -7.810 4.949 5.292 -0.635 H15 SJI 45 SJI H16 H16 H 0 1 N N N 15.885 11.661 -9.451 5.141 5.157 1.130 H16 SJI 46 SJI H17 H17 H 0 1 N N N 17.563 13.403 -9.776 6.830 3.370 0.809 H17 SJI 47 SJI H18 H18 H 0 1 N N N 17.214 14.045 -8.135 6.638 3.504 -0.955 H18 SJI 48 SJI H19 H19 H 0 1 N N N 13.600 14.602 -10.928 5.225 -1.316 -0.275 H19 SJI 49 SJI H20 H20 H 0 1 N N N 9.640 19.429 -12.361 -0.868 -3.303 0.253 H20 SJI 50 SJI H21 H21 H 0 1 N N N 9.084 18.926 -10.047 -0.367 -0.655 1.691 H21 SJI 51 SJI H22 H22 H 0 1 N N N 10.588 19.741 -9.498 -0.403 -2.268 2.444 H22 SJI 52 SJI H24 H24 H 0 1 N N N 12.591 19.488 -13.402 -1.243 -1.521 -2.980 H24 SJI 53 SJI H25 H25 H 0 1 N N N 11.283 20.461 -14.156 0.278 -2.184 -2.334 H25 SJI 54 SJI H26 H26 H 0 1 N N N 12.753 21.273 -13.518 -1.232 -3.117 -2.192 H26 SJI 55 SJI H27 H27 H 0 1 N N N 9.334 23.862 -11.647 -4.863 -1.376 0.519 H27 SJI 56 SJI H28 H28 H 0 1 N N N 8.132 23.141 -10.523 -4.518 -0.338 1.923 H28 SJI 57 SJI H29 H29 H 0 1 N N N 11.344 26.062 -7.976 -6.496 2.075 -1.515 H29 SJI 58 SJI H30 H30 H 0 1 N N N 12.272 26.654 -9.395 -7.663 2.507 -0.243 H30 SJI 59 SJI H31 H31 H 0 1 N N N 10.492 28.244 -8.634 -6.045 4.347 -0.630 H31 SJI 60 SJI H32 H32 H 0 1 N N N 10.276 27.690 -10.330 -5.867 3.673 1.008 H32 SJI 61 SJI H33 H33 H 0 1 N N N 8.119 27.661 -9.170 -4.156 2.945 -1.413 H33 SJI 62 SJI H34 H34 H 0 1 N N N 8.806 26.647 -7.856 -3.656 3.997 -0.067 H34 SJI 63 SJI H35 H35 H 0 1 N N N 8.419 25.895 -10.785 -3.978 2.120 1.521 H35 SJI 64 SJI H36 H36 H 0 1 N N N 7.536 25.242 -9.364 -2.811 1.687 0.249 H36 SJI 65 SJI H37 H37 H 0 1 N N N 9.593 24.556 -7.649 -4.818 1.197 -1.906 H37 SJI 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SJI C32 C13 SING N N 1 SJI C23 C21 SING N N 2 SJI C13 N12 DOUB Y N 3 SJI C13 N14 SING Y N 4 SJI N12 C10 SING Y N 5 SJI C21 C20 SING N N 6 SJI C21 C15 SING N N 7 SJI C20 N19 SING N N 8 SJI N14 C15 SING N N 9 SJI N14 C9 SING Y N 10 SJI C15 C17 SING N N 11 SJI C10 C9 DOUB Y N 12 SJI C10 C11 SING Y N 13 SJI C9 C8 SING Y N 14 SJI C11 C6 DOUB Y N 15 SJI C24 N19 SING N N 16 SJI C24 C25 SING N N 17 SJI N19 C18 SING N N 18 SJI C17 C18 SING N N 19 SJI C8 C7 DOUB Y N 20 SJI C26 C25 SING N N 21 SJI C26 C27 SING N N 22 SJI C6 C7 SING Y N 23 SJI C6 C4 SING N N 24 SJI C30 C25 SING N N 25 SJI C30 C29 SING N N 26 SJI C25 O31 SING N N 27 SJI N3 C4 SING N N 28 SJI N3 C2 SING N N 29 SJI C4 O5 DOUB N N 30 SJI C28 C27 SING N N 31 SJI C28 C29 SING N N 32 SJI C2 C1 SING N N 33 SJI C32 H1 SING N N 34 SJI C32 H2 SING N N 35 SJI C32 H3 SING N N 36 SJI N3 H4 SING N N 37 SJI C7 H5 SING N N 38 SJI C20 H6 SING N N 39 SJI C20 H7 SING N N 40 SJI C21 H8 SING N N 41 SJI C8 H9 SING N N 42 SJI C18 H10 SING N N 43 SJI C18 H11 SING N N 44 SJI C26 H12 SING N N 45 SJI C26 H13 SING N N 46 SJI C1 H14 SING N N 47 SJI C1 H15 SING N N 48 SJI C1 H16 SING N N 49 SJI C2 H17 SING N N 50 SJI C2 H18 SING N N 51 SJI C11 H19 SING N N 52 SJI C15 H20 SING N N 53 SJI C17 H21 SING N N 54 SJI C17 H22 SING N N 55 SJI C23 H24 SING N N 56 SJI C23 H25 SING N N 57 SJI C23 H26 SING N N 58 SJI C24 H27 SING N N 59 SJI C24 H28 SING N N 60 SJI C27 H29 SING N N 61 SJI C27 H30 SING N N 62 SJI C28 H31 SING N N 63 SJI C28 H32 SING N N 64 SJI C29 H33 SING N N 65 SJI C29 H34 SING N N 66 SJI C30 H35 SING N N 67 SJI C30 H36 SING N N 68 SJI O31 H37 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SJI SMILES ACDLabs 12.01 "CCNC(=O)c1cc2nc(C)n(C3CCN(CC4(O)CCCCC4)CC3C)c2cc1" SJI InChI InChI 1.06 "InChI=1S/C24H36N4O2/c1-4-25-23(29)19-8-9-22-20(14-19)26-18(3)28(22)21-10-13-27(15-17(21)2)16-24(30)11-6-5-7-12-24/h8-9,14,17,21,30H,4-7,10-13,15-16H2,1-3H3,(H,25,29)/t17-,21-/m0/s1" SJI InChIKey InChI 1.06 WGCGFOZDARLLJO-UWJYYQICSA-N SJI SMILES_CANONICAL CACTVS 3.385 "CCNC(=O)c1ccc2n([C@H]3CCN(C[C@@H]3C)CC4(O)CCCCC4)c(C)nc2c1" SJI SMILES CACTVS 3.385 "CCNC(=O)c1ccc2n([CH]3CCN(C[CH]3C)CC4(O)CCCCC4)c(C)nc2c1" SJI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCNC(=O)c1ccc2c(c1)nc(n2[C@H]3CCN(C[C@@H]3C)CC4(CCCCC4)O)C" SJI SMILES "OpenEye OEToolkits" 2.0.7 "CCNC(=O)c1ccc2c(c1)nc(n2C3CCN(CC3C)CC4(CCCCC4)O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SJI "SYSTEMATIC NAME" ACDLabs 12.01 "N-ethyl-1-{(3S,4S)-1-[(1-hydroxycyclohexyl)methyl]-3-methylpiperidin-4-yl}-2-methyl-1H-benzimidazole-5-carboxamide" SJI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-ethyl-2-methyl-1-[(3~{S},4~{S})-3-methyl-1-[(1-oxidanylcyclohexyl)methyl]piperidin-4-yl]benzimidazole-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SJI "Create component" 2022-07-06 RCSB SJI "Initial release" 2023-01-11 RCSB #