data_SJM
#
_chem_comp.id SJM
_chem_comp.name "~{N}-[6-methyl-5-[3-[2-[[(3~{S})-piperidin-3-yl]amino]pyrimidin-4-yl]pyridin-2-yl]oxy-naphthalen-1-yl]but-2-ynamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H28 N6 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-10
_chem_comp.pdbx_modified_date 2020-12-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 492.572
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SJM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6W3A
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SJM C4 C1 C 0 1 N N N 108.618 -15.613 51.891 6.285 -1.183 -0.788 C4 SJM 1
SJM C14 C2 C 0 1 Y N N 108.547 -19.865 50.596 2.303 0.009 2.681 C14 SJM 2
SJM C11 C3 C 0 1 Y N N 106.838 -19.580 52.755 1.767 0.137 -0.045 C11 SJM 3
SJM C7 C4 C 0 1 Y N N 107.808 -17.398 53.264 3.948 -0.856 -0.507 C7 SJM 4
SJM C8 C5 C 0 1 Y N N 106.930 -17.298 54.324 3.668 -0.785 -1.855 C8 SJM 5
SJM C9 C6 C 0 1 Y N N 106.023 -18.312 54.613 2.459 -0.262 -2.304 C9 SJM 6
SJM C10 C7 C 0 1 Y N N 105.971 -19.437 53.850 1.521 0.192 -1.427 C10 SJM 7
SJM C12 C8 C 0 1 Y N N 107.770 -18.556 52.449 2.994 -0.392 0.424 C12 SJM 8
SJM C13 C9 C 0 1 Y N N 108.625 -18.730 51.348 3.241 -0.446 1.805 C13 SJM 9
SJM C3 C10 C 0 1 N N N 109.499 -14.506 51.673 7.547 -1.639 -0.289 C3 SJM 10
SJM C1 C11 C 0 1 N N N 111.116 -12.456 51.241 9.880 -2.481 0.632 C1 SJM 11
SJM C15 C12 C 0 1 Y N N 107.631 -20.871 50.892 1.093 0.531 2.231 C15 SJM 12
SJM C16 C13 C 0 1 Y N N 106.784 -20.744 51.964 0.814 0.600 0.885 C16 SJM 13
SJM C18 C14 C 0 1 Y N N 106.086 -23.006 52.404 -0.435 2.443 0.210 C18 SJM 14
SJM C19 C15 C 0 1 Y N N 105.061 -23.925 52.112 -1.638 3.010 -0.228 C19 SJM 15
SJM C2 C16 C 0 1 N N N 110.217 -13.596 51.482 8.582 -2.012 0.119 C2 SJM 16
SJM C20 C17 C 0 1 Y N N 105.345 -25.287 52.231 -1.687 4.385 -0.470 C20 SJM 17
SJM C21 C18 C 0 1 Y N N 106.614 -25.677 52.627 -0.537 5.130 -0.265 C21 SJM 18
SJM C22 C19 C 0 1 Y N N 107.565 -24.712 52.895 0.613 4.498 0.169 C22 SJM 19
SJM C24 C20 C 0 1 Y N N 103.694 -23.520 51.683 -2.839 2.167 -0.431 C24 SJM 20
SJM C25 C21 C 0 1 Y N N 103.266 -22.186 51.646 -4.040 2.734 -0.869 C25 SJM 21
SJM C26 C22 C 0 1 Y N N 101.980 -21.899 51.233 -5.134 1.908 -1.046 C26 SJM 22
SJM C28 C23 C 0 1 Y N N 101.601 -24.147 50.930 -3.864 0.101 -0.383 C28 SJM 23
SJM C31 C24 C 0 1 N N S 101.141 -26.560 50.645 -4.956 -2.111 -0.329 C31 SJM 24
SJM C33 C25 C 0 1 N N N 99.895 -27.439 50.511 -4.506 -3.548 -0.610 C33 SJM 25
SJM C34 C26 C 0 1 N N N 100.298 -28.913 50.433 -5.741 -4.443 -0.749 C34 SJM 26
SJM C35 C27 C 0 1 N N N 101.269 -29.105 49.268 -6.576 -4.353 0.531 C35 SJM 27
SJM C37 C28 C 0 1 N N N 102.138 -26.868 49.522 -5.814 -2.089 0.938 C37 SJM 28
SJM C38 C29 C 0 1 N N N 107.605 -22.091 50.007 0.078 1.025 3.229 C38 SJM 29
SJM N23 N1 N 0 1 Y N N 107.281 -23.430 52.779 0.635 3.197 0.391 N23 SJM 30
SJM N27 N2 N 0 1 Y N N 101.181 -22.893 50.885 -5.014 0.613 -0.797 N27 SJM 31
SJM N29 N3 N 0 1 Y N N 102.828 -24.462 51.318 -2.791 0.855 -0.206 N29 SJM 32
SJM N30 N4 N 0 1 N N N 100.731 -25.156 50.557 -3.780 -1.259 -0.139 N30 SJM 33
SJM N36 N5 N 0 1 N N N 102.470 -28.298 49.512 -6.982 -2.960 0.755 N36 SJM 34
SJM N6 N6 N 0 1 N N N 108.679 -16.326 53.037 5.163 -1.382 -0.067 N6 SJM 35
SJM O17 O1 O 0 1 N N N 105.854 -21.674 52.305 -0.369 1.111 0.456 O17 SJM 36
SJM O5 O2 O 0 1 N N N 107.813 -15.909 51.030 6.225 -0.612 -1.860 O5 SJM 37
SJM H1 H1 H 0 1 N N N 109.210 -19.986 49.752 2.498 -0.041 3.743 H1 SJM 38
SJM H2 H2 H 0 1 N N N 106.948 -16.413 54.943 4.396 -1.138 -2.570 H2 SJM 39
SJM H3 H3 H 0 1 N N N 105.352 -18.205 55.453 2.261 -0.216 -3.364 H3 SJM 40
SJM H4 H4 H 0 1 N N N 105.264 -20.219 54.086 0.588 0.593 -1.794 H4 SJM 41
SJM H5 H5 H 0 1 N N N 109.344 -17.965 51.097 4.174 -0.848 2.172 H5 SJM 42
SJM H6 H6 H 0 1 N N N 111.615 -12.177 52.181 10.664 -2.233 -0.083 H6 SJM 43
SJM H7 H7 H 0 1 N N N 111.873 -12.737 50.494 10.091 -1.996 1.585 H7 SJM 44
SJM H8 H8 H 0 1 N N N 110.532 -11.601 50.868 9.846 -3.561 0.774 H8 SJM 45
SJM H9 H9 H 0 1 N N N 104.586 -26.026 52.017 -2.598 4.855 -0.808 H9 SJM 46
SJM H10 H10 H 0 1 N N N 106.857 -26.725 52.725 -0.539 6.195 -0.442 H10 SJM 47
SJM H11 H11 H 0 1 N N N 108.555 -25.012 53.204 1.510 5.079 0.328 H11 SJM 48
SJM H12 H12 H 0 1 N N N 103.935 -21.390 51.938 -4.111 3.794 -1.065 H12 SJM 49
SJM H13 H13 H 0 1 N N N 101.632 -20.877 51.195 -6.076 2.313 -1.382 H13 SJM 50
SJM H32 H14 H 0 1 N N N 101.619 -26.755 51.616 -5.541 -1.742 -1.171 H32 SJM 51
SJM H14 H15 H 0 1 N N N 99.351 -27.162 49.596 -3.931 -3.575 -1.535 H14 SJM 52
SJM H15 H16 H 0 1 N N N 99.245 -27.285 51.385 -3.888 -3.904 0.214 H15 SJM 53
SJM H16 H17 H 0 1 N N N 99.403 -29.532 50.272 -6.338 -4.110 -1.597 H16 SJM 54
SJM H17 H18 H 0 1 N N N 100.786 -29.212 51.372 -5.427 -5.475 -0.907 H17 SJM 55
SJM H18 H19 H 0 1 N N N 100.791 -28.782 48.332 -7.464 -4.978 0.430 H18 SJM 56
SJM H19 H20 H 0 1 N N N 101.547 -30.166 49.190 -5.983 -4.699 1.377 H19 SJM 57
SJM H20 H21 H 0 1 N N N 103.056 -26.284 49.682 -5.224 -2.446 1.782 H20 SJM 58
SJM H21 H22 H 0 1 N N N 101.692 -26.593 48.555 -6.148 -1.070 1.133 H21 SJM 59
SJM H22 H23 H 0 1 N N N 108.301 -22.846 50.402 0.252 2.082 3.431 H22 SJM 60
SJM H23 H24 H 0 1 N N N 106.587 -22.506 49.985 -0.925 0.893 2.822 H23 SJM 61
SJM H24 H25 H 0 1 N N N 107.908 -21.811 48.987 0.172 0.458 4.155 H24 SJM 62
SJM H25 H26 H 0 1 N N N 100.489 -24.987 49.602 -2.942 -1.648 0.157 H25 SJM 63
SJM H26 H27 H 0 1 N N N 102.862 -28.551 50.397 -7.566 -2.628 0.002 H26 SJM 64
SJM H28 H29 H 0 1 N N N 109.356 -16.085 53.733 5.201 -1.891 0.758 H28 SJM 65
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SJM C35 N36 SING N N 1
SJM C35 C34 SING N N 2
SJM N36 C37 SING N N 3
SJM C37 C31 SING N N 4
SJM C38 C15 SING N N 5
SJM C34 C33 SING N N 6
SJM C33 C31 SING N N 7
SJM N30 C31 SING N N 8
SJM N30 C28 SING N N 9
SJM C14 C15 DOUB Y N 10
SJM C14 C13 SING Y N 11
SJM N27 C28 DOUB Y N 12
SJM N27 C26 SING Y N 13
SJM C15 C16 SING Y N 14
SJM C28 N29 SING Y N 15
SJM O5 C4 DOUB N N 16
SJM C26 C25 DOUB Y N 17
SJM C1 C2 SING N N 18
SJM N29 C24 DOUB Y N 19
SJM C13 C12 DOUB Y N 20
SJM C2 C3 TRIP N N 21
SJM C25 C24 SING Y N 22
SJM C3 C4 SING N N 23
SJM C24 C19 SING N N 24
SJM C4 N6 SING N N 25
SJM C16 O17 SING N N 26
SJM C16 C11 DOUB Y N 27
SJM C19 C20 DOUB Y N 28
SJM C19 C18 SING Y N 29
SJM C20 C21 SING Y N 30
SJM O17 C18 SING N N 31
SJM C18 N23 DOUB Y N 32
SJM C12 C11 SING Y N 33
SJM C12 C7 SING Y N 34
SJM C21 C22 DOUB Y N 35
SJM C11 C10 SING Y N 36
SJM N23 C22 SING Y N 37
SJM N6 C7 SING N N 38
SJM C7 C8 DOUB Y N 39
SJM C10 C9 DOUB Y N 40
SJM C8 C9 SING Y N 41
SJM C14 H1 SING N N 42
SJM C8 H2 SING N N 43
SJM C9 H3 SING N N 44
SJM C10 H4 SING N N 45
SJM C13 H5 SING N N 46
SJM C1 H6 SING N N 47
SJM C1 H7 SING N N 48
SJM C1 H8 SING N N 49
SJM C20 H9 SING N N 50
SJM C21 H10 SING N N 51
SJM C22 H11 SING N N 52
SJM C25 H12 SING N N 53
SJM C26 H13 SING N N 54
SJM C31 H32 SING N N 55
SJM C33 H14 SING N N 56
SJM C33 H15 SING N N 57
SJM C34 H16 SING N N 58
SJM C34 H17 SING N N 59
SJM C35 H18 SING N N 60
SJM C35 H19 SING N N 61
SJM C37 H20 SING N N 62
SJM C37 H21 SING N N 63
SJM C38 H22 SING N N 64
SJM C38 H23 SING N N 65
SJM C38 H24 SING N N 66
SJM N30 H25 SING N N 67
SJM N36 H26 SING N N 68
SJM N6 H28 SING N N 69
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SJM InChI InChI 1.03 "InChI=1S/C29H28N6O2/c1-3-7-26(36)34-24-11-4-9-22-21(24)13-12-19(2)27(22)37-28-23(10-6-16-31-28)25-14-17-32-29(35-25)33-20-8-5-15-30-18-20/h4,6,9-14,16-17,20,30H,5,8,15,18H2,1-2H3,(H,34,36)(H,32,33,35)/t20-/m0/s1"
SJM InChIKey InChI 1.03 NYJNJBQWBJXYJJ-FQEVSTJZSA-N
SJM SMILES_CANONICAL CACTVS 3.385 "CC#CC(=O)Nc1cccc2c(Oc3ncccc3c4ccnc(N[C@H]5CCCNC5)n4)c(C)ccc12"
SJM SMILES CACTVS 3.385 "CC#CC(=O)Nc1cccc2c(Oc3ncccc3c4ccnc(N[CH]5CCCNC5)n4)c(C)ccc12"
SJM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC#CC(=O)Nc1cccc2c1ccc(c2Oc3c(cccn3)c4ccnc(n4)N[C@H]5CCCNC5)C"
SJM SMILES "OpenEye OEToolkits" 2.0.7 "CC#CC(=O)Nc1cccc2c1ccc(c2Oc3c(cccn3)c4ccnc(n4)NC5CCCNC5)C"
#
_pdbx_chem_comp_identifier.comp_id SJM
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "~{N}-[6-methyl-5-[3-[2-[[(3~{S})-piperidin-3-yl]amino]pyrimidin-4-yl]pyridin-2-yl]oxy-naphthalen-1-yl]but-2-ynamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SJM "Create component" 2020-03-10 RCSB
SJM "Initial release" 2020-12-09 RCSB
##