data_SJV
#
_chem_comp.id SJV
_chem_comp.name "methyl ~{N}-[6-methyl-5-[3-[2-[[(3~{S})-piperidin-3-yl]amino]pyrimidin-4-yl]pyridin-2-yl]oxy-naphthalen-1-yl]carbamate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H28 N6 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-10
_chem_comp.pdbx_modified_date 2020-12-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 484.550
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SJV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6W3E
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SJV C4 C1 C 0 1 Y N N 17.927 -39.769 20.667 3.515 0.182 -1.964 C4 SJV 1
SJV C5 C2 C 0 1 Y N N 17.202 -40.959 20.839 3.244 -0.000 -0.598 C5 SJV 2
SJV C6 C3 C 0 1 Y N N 16.195 -41.298 19.902 1.987 0.395 -0.079 C6 SJV 3
SJV C11 C4 C 0 1 Y N N 14.573 -42.530 14.757 -1.657 4.368 0.952 C11 SJV 4
SJV C7 C5 C 0 1 Y N N 15.942 -40.436 18.816 1.031 0.964 -0.946 C7 SJV 5
SJV C9 C6 C 0 1 Y N N 15.256 -41.361 16.749 -0.311 2.619 -0.013 C9 SJV 6
SJV C10 C7 C 0 1 Y N N 14.226 -41.909 15.959 -1.544 3.055 0.487 C10 SJV 7
SJV C12 C8 C 0 1 Y N N 15.906 -42.578 14.390 -0.540 5.185 0.893 C12 SJV 8
SJV C13 C9 C 0 1 Y N N 16.857 -42.014 15.218 0.642 4.683 0.381 C13 SJV 9
SJV C3 C10 C 0 1 Y N N 17.655 -38.956 19.608 2.572 0.739 -2.773 C3 SJV 10
SJV C1 C11 C 0 1 N N N 16.392 -38.358 17.530 0.311 1.733 -3.195 C1 SJV 11
SJV C2 C12 C 0 1 Y N N 16.664 -39.284 18.687 1.332 1.125 -2.269 C2 SJV 12
SJV O8 O1 O 0 1 N N N 14.967 -40.744 17.921 -0.181 1.349 -0.469 O8 SJV 13
SJV N14 N1 N 0 1 Y N N 16.514 -41.432 16.350 0.725 3.440 -0.053 N14 SJV 14
SJV C15 C13 C 0 1 Y N N 12.793 -41.862 16.354 -2.709 2.141 0.523 C15 SJV 15
SJV C16 C14 C 0 1 Y N N 12.395 -41.848 17.696 -3.940 2.578 1.023 C16 SJV 16
SJV C17 C15 C 0 1 Y N N 11.046 -41.809 17.995 -4.999 1.688 1.036 C17 SJV 17
SJV N18 N2 N 0 1 Y N N 10.167 -41.797 17.007 -4.818 0.459 0.578 N18 SJV 18
SJV C19 C16 C 0 1 Y N N 10.564 -41.823 15.744 -3.641 0.072 0.110 C19 SJV 19
SJV N20 N3 N 0 1 Y N N 11.847 -41.857 15.415 -2.602 0.892 0.074 N20 SJV 20
SJV N21 N4 N 0 1 N N N 9.604 -41.807 14.750 -3.494 -1.223 -0.358 N21 SJV 21
SJV C22 C17 C 0 1 N N S 9.947 -42.201 13.383 -4.632 -2.144 -0.332 C22 SJV 22
SJV C24 C18 C 0 1 N N N 8.656 -42.453 12.600 -4.444 -3.220 -1.405 C24 SJV 23
SJV C25 C19 C 0 1 N N N 9.004 -42.795 11.149 -5.607 -4.213 -1.331 C25 SJV 24
SJV C26 C20 C 0 1 N N N 9.831 -41.660 10.542 -5.665 -4.820 0.072 C26 SJV 25
SJV N27 N5 N 0 1 N N N 11.056 -41.468 11.328 -5.847 -3.751 1.062 N27 SJV 26
SJV C28 C21 C 0 1 N N N 10.743 -41.082 12.709 -4.719 -2.810 1.043 C28 SJV 27
SJV C29 C22 C 0 1 Y N N 15.466 -42.486 20.068 1.714 0.213 1.286 C29 SJV 28
SJV C30 C23 C 0 1 Y N N 15.732 -43.301 21.125 2.655 -0.340 2.100 C30 SJV 29
SJV C31 C24 C 0 1 Y N N 16.717 -42.974 22.054 3.894 -0.732 1.602 C31 SJV 30
SJV C32 C25 C 0 1 Y N N 17.464 -41.821 21.925 4.201 -0.570 0.269 C32 SJV 31
SJV N33 N6 N 0 1 N N N 18.453 -41.467 22.854 5.447 -0.967 -0.221 N33 SJV 32
SJV C34 C26 C 0 1 N N N 19.245 -42.336 23.524 6.149 -1.924 0.417 C34 SJV 33
SJV O35 O2 O 0 1 N N N 19.172 -43.538 23.358 5.655 -2.514 1.358 O35 SJV 34
SJV O36 O3 O 0 1 N N N 20.150 -41.849 24.394 7.397 -2.227 0.013 O36 SJV 35
SJV C37 C27 C 0 1 N N N 20.794 -42.801 25.280 8.093 -3.269 0.747 C37 SJV 36
SJV H1 H1 H 0 1 N N N 18.699 -39.499 21.373 4.470 -0.116 -2.371 H1 SJV 37
SJV H2 H2 H 0 1 N N N 13.813 -42.965 14.125 -2.593 4.737 1.344 H2 SJV 38
SJV H3 H3 H 0 1 N N N 16.200 -43.052 13.465 -0.592 6.205 1.244 H3 SJV 39
SJV H4 H4 H 0 1 N N N 17.898 -42.050 14.933 1.513 5.320 0.335 H4 SJV 40
SJV H5 H5 H 0 1 N N N 18.217 -38.043 19.481 2.785 0.876 -3.822 H5 SJV 41
SJV H6 H6 H 0 1 N N N 15.624 -37.625 17.819 0.441 2.815 -3.219 H6 SJV 42
SJV H7 H7 H 0 1 N N N 17.318 -37.830 17.257 0.444 1.329 -4.199 H7 SJV 43
SJV H8 H8 H 0 1 N N N 16.036 -38.942 16.669 -0.691 1.495 -2.838 H8 SJV 44
SJV H9 H9 H 0 1 N N N 13.131 -41.867 18.486 -4.060 3.586 1.390 H9 SJV 45
SJV H10 H10 H 0 1 N N N 10.714 -41.789 19.023 -5.963 1.993 1.415 H10 SJV 46
SJV H11 H11 H 0 1 N N N 9.258 -40.870 14.700 -2.638 -1.519 -0.704 H11 SJV 47
SJV H23 H12 H 0 1 N N N 10.551 -43.121 13.393 -5.552 -1.593 -0.528 H23 SJV 48
SJV H12 H13 H 0 1 N N N 8.029 -41.550 12.625 -4.425 -2.754 -2.390 H12 SJV 49
SJV H13 H14 H 0 1 N N N 8.108 -43.292 13.054 -3.504 -3.745 -1.233 H13 SJV 50
SJV H14 H15 H 0 1 N N N 8.077 -42.924 10.570 -6.542 -3.695 -1.542 H14 SJV 51
SJV H15 H16 H 0 1 N N N 9.586 -43.728 11.122 -5.457 -5.005 -2.065 H15 SJV 52
SJV H16 H17 H 0 1 N N N 10.097 -41.915 9.506 -6.501 -5.517 0.133 H16 SJV 53
SJV H17 H18 H 0 1 N N N 9.241 -40.732 10.551 -4.735 -5.350 0.278 H17 SJV 54
SJV H18 H19 H 0 1 N N N 11.575 -42.323 11.337 -6.721 -3.269 0.917 H18 SJV 55
SJV H20 H21 H 0 1 N N N 11.678 -40.912 13.263 -3.793 -3.349 1.243 H20 SJV 56
SJV H21 H22 H 0 1 N N N 10.146 -40.158 12.705 -4.869 -2.048 1.808 H21 SJV 57
SJV H22 H23 H 0 1 N N N 14.696 -42.753 19.359 0.758 0.512 1.690 H22 SJV 58
SJV H24 H24 H 0 1 N N N 15.171 -44.216 21.245 2.437 -0.476 3.149 H24 SJV 59
SJV H25 H25 H 0 1 N N N 16.899 -43.634 22.889 4.624 -1.167 2.269 H25 SJV 60
SJV H26 H26 H 0 1 N N N 18.584 -40.492 23.036 5.808 -0.553 -1.021 H26 SJV 61
SJV H27 H27 H 0 1 N N N 21.504 -42.273 25.933 9.085 -3.414 0.320 H27 SJV 62
SJV H28 H28 H 0 1 N N N 20.032 -43.302 25.896 8.187 -2.976 1.793 H28 SJV 63
SJV H29 H29 H 0 1 N N N 21.333 -43.551 24.683 7.529 -4.199 0.680 H29 SJV 64
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SJV C26 C25 SING N N 1
SJV C26 N27 SING N N 2
SJV C25 C24 SING N N 3
SJV N27 C28 SING N N 4
SJV C24 C22 SING N N 5
SJV C28 C22 SING N N 6
SJV C22 N21 SING N N 7
SJV C12 C11 DOUB Y N 8
SJV C12 C13 SING Y N 9
SJV N21 C19 SING N N 10
SJV C11 C10 SING Y N 11
SJV C13 N14 DOUB Y N 12
SJV N20 C19 DOUB Y N 13
SJV N20 C15 SING Y N 14
SJV C19 N18 SING Y N 15
SJV C10 C15 SING N N 16
SJV C10 C9 DOUB Y N 17
SJV N14 C9 SING Y N 18
SJV C15 C16 DOUB Y N 19
SJV C9 O8 SING N N 20
SJV N18 C17 DOUB Y N 21
SJV C1 C2 SING N N 22
SJV C16 C17 SING Y N 23
SJV O8 C7 SING N N 24
SJV C2 C7 DOUB Y N 25
SJV C2 C3 SING Y N 26
SJV C7 C6 SING Y N 27
SJV C3 C4 DOUB Y N 28
SJV C6 C29 DOUB Y N 29
SJV C6 C5 SING Y N 30
SJV C29 C30 SING Y N 31
SJV C4 C5 SING Y N 32
SJV C5 C32 DOUB Y N 33
SJV C30 C31 DOUB Y N 34
SJV C32 C31 SING Y N 35
SJV C32 N33 SING N N 36
SJV N33 C34 SING N N 37
SJV O35 C34 DOUB N N 38
SJV C34 O36 SING N N 39
SJV O36 C37 SING N N 40
SJV C4 H1 SING N N 41
SJV C11 H2 SING N N 42
SJV C12 H3 SING N N 43
SJV C13 H4 SING N N 44
SJV C3 H5 SING N N 45
SJV C1 H6 SING N N 46
SJV C1 H7 SING N N 47
SJV C1 H8 SING N N 48
SJV C16 H9 SING N N 49
SJV C17 H10 SING N N 50
SJV N21 H11 SING N N 51
SJV C22 H23 SING N N 52
SJV C24 H12 SING N N 53
SJV C24 H13 SING N N 54
SJV C25 H14 SING N N 55
SJV C25 H15 SING N N 56
SJV C26 H16 SING N N 57
SJV C26 H17 SING N N 58
SJV N27 H18 SING N N 59
SJV C28 H20 SING N N 60
SJV C28 H21 SING N N 61
SJV C29 H22 SING N N 62
SJV C30 H24 SING N N 63
SJV C31 H25 SING N N 64
SJV N33 H26 SING N N 65
SJV C37 H27 SING N N 66
SJV C37 H28 SING N N 67
SJV C37 H29 SING N N 68
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SJV InChI InChI 1.03 "InChI=1S/C27H28N6O3/c1-17-10-11-19-20(7-3-9-22(19)33-27(34)35-2)24(17)36-25-21(8-5-14-29-25)23-12-15-30-26(32-23)31-18-6-4-13-28-16-18/h3,5,7-12,14-15,18,28H,4,6,13,16H2,1-2H3,(H,33,34)(H,30,31,32)/t18-/m0/s1"
SJV InChIKey InChI 1.03 FMMZPTONJKUBJE-SFHVURJKSA-N
SJV SMILES_CANONICAL CACTVS 3.385 "COC(=O)Nc1cccc2c(Oc3ncccc3c4ccnc(N[C@H]5CCCNC5)n4)c(C)ccc12"
SJV SMILES CACTVS 3.385 "COC(=O)Nc1cccc2c(Oc3ncccc3c4ccnc(N[CH]5CCCNC5)n4)c(C)ccc12"
SJV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc2c(c1Oc3c(cccn3)c4ccnc(n4)N[C@H]5CCCNC5)cccc2NC(=O)OC"
SJV SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc2c(c1Oc3c(cccn3)c4ccnc(n4)NC5CCCNC5)cccc2NC(=O)OC"
#
_pdbx_chem_comp_identifier.comp_id SJV
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "methyl ~{N}-[6-methyl-5-[3-[2-[[(3~{S})-piperidin-3-yl]amino]pyrimidin-4-yl]pyridin-2-yl]oxy-naphthalen-1-yl]carbamate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SJV "Create component" 2020-03-10 RCSB
SJV "Initial release" 2020-12-09 RCSB
##