data_SK3 # _chem_comp.id SK3 _chem_comp.name "(1R,2R,3S,4S,5R)-5-(BENZYLAMINO)CYCLOPENTANE-1,2,3,4-TETROL" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H17 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-01-24 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 239.268 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SK3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2F7R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SK3 C5 C5 C 0 1 N N R 31.166 66.088 9.384 0.932 0.360 0.769 C5 SK3 1 SK3 N5 N5 N 0 1 N N N 30.741 64.914 10.168 -0.378 0.381 0.106 N5 SK3 2 SK3 C4 C4 C 0 1 N N R 32.689 66.210 9.273 1.628 -1.011 0.577 C4 SK3 3 SK3 O4 O4 O 0 1 N N N 33.363 65.001 9.586 1.371 -1.523 -0.733 O4 SK3 4 SK3 C3 C3 C 0 1 N N R 32.994 66.632 7.825 3.129 -0.701 0.753 C3 SK3 5 SK3 O3 O3 O 0 1 N N N 33.627 65.610 7.061 3.902 -1.490 -0.154 O3 SK3 6 SK3 C2 C2 C 0 1 N N S 31.607 66.982 7.293 3.310 0.794 0.437 C2 SK3 7 SK3 O2 O2 O 0 1 N N N 31.481 67.082 5.894 4.198 0.957 -0.670 O2 SK3 8 SK3 C1 C1 C 0 1 N N S 30.608 66.052 7.971 1.912 1.341 0.079 C1 SK3 9 SK3 O1 O1 O 0 1 N N N 30.529 64.776 7.392 1.719 1.332 -1.336 O1 SK3 10 SK3 C6 C6 C 0 1 N N N 29.357 65.071 10.623 -1.365 -0.049 1.106 C6 SK3 11 SK3 C7 C7 C 0 1 Y N N 28.779 63.915 11.465 -2.739 -0.051 0.488 C7 SK3 12 SK3 C12 C12 C 0 1 Y N N 28.837 64.019 12.849 -3.216 -1.189 -0.134 C12 SK3 13 SK3 C11 C11 C 0 1 Y N N 28.302 62.898 13.495 -4.477 -1.190 -0.701 C11 SK3 14 SK3 C8 C8 C 0 1 Y N N 28.310 62.921 10.590 -3.525 1.085 0.548 C8 SK3 15 SK3 C9 C9 C 0 1 Y N N 27.792 61.813 11.306 -4.784 1.086 -0.023 C9 SK3 16 SK3 C10 C10 C 0 1 Y N N 27.811 61.854 12.706 -5.261 -0.053 -0.646 C10 SK3 17 SK3 H5 H5 H 0 1 N N N 30.770 66.954 9.934 0.831 0.596 1.828 H5 SK3 18 SK3 HN5 HN5 H 0 1 N N N 30.806 64.097 9.595 -0.581 1.347 -0.105 HN5 SK3 19 SK3 H4 H4 H 0 1 N N N 33.050 66.950 10.002 1.292 -1.719 1.335 H4 SK3 20 SK3 HO4 HO4 H 0 1 N N N 33.514 64.506 8.789 1.827 -2.374 -0.794 HO4 SK3 21 SK3 H3 H3 H 0 1 N N N 33.714 67.461 7.764 3.434 -0.906 1.779 H3 SK3 22 SK3 HO3 HO3 H 0 1 N N N 33.768 65.919 6.174 4.828 -1.252 -0.012 HO3 SK3 23 SK3 H2 H2 H 0 1 N N N 31.385 68.025 7.564 3.702 1.315 1.310 H2 SK3 24 SK3 HO2 HO2 H 0 1 N N N 30.561 67.105 5.659 5.049 0.581 -0.403 HO2 SK3 25 SK3 H1 H1 H 0 1 N N N 29.553 66.353 7.892 1.785 2.349 0.475 H1 SK3 26 SK3 HO1 HO1 H 0 1 N N N 30.511 64.858 6.446 2.393 1.914 -1.714 HO1 SK3 27 SK3 H61 1H6 H 0 1 N N N 28.746 65.108 9.709 -1.119 -1.055 1.449 H61 SK3 28 SK3 H62 2H6 H 0 1 N N N 29.319 65.978 11.244 -1.347 0.637 1.952 H62 SK3 29 SK3 H12 H12 H 0 1 N N N 29.249 64.871 13.369 -2.604 -2.078 -0.178 H12 SK3 30 SK3 H11 H11 H 0 1 N N N 28.270 62.842 14.573 -4.849 -2.079 -1.188 H11 SK3 31 SK3 H8 H8 H 0 1 N N N 28.340 62.992 9.513 -3.152 1.974 1.035 H8 SK3 32 SK3 H9 H9 H 0 1 N N N 27.392 60.956 10.784 -5.396 1.974 0.020 H9 SK3 33 SK3 H10 H10 H 0 1 N N N 27.408 60.997 13.225 -6.245 -0.053 -1.089 H10 SK3 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SK3 C5 N5 SING N N 1 SK3 C5 C4 SING N N 2 SK3 C5 C1 SING N N 3 SK3 C5 H5 SING N N 4 SK3 N5 C6 SING N N 5 SK3 N5 HN5 SING N N 6 SK3 C4 O4 SING N N 7 SK3 C4 C3 SING N N 8 SK3 C4 H4 SING N N 9 SK3 O4 HO4 SING N N 10 SK3 C3 O3 SING N N 11 SK3 C3 C2 SING N N 12 SK3 C3 H3 SING N N 13 SK3 O3 HO3 SING N N 14 SK3 C2 O2 SING N N 15 SK3 C2 C1 SING N N 16 SK3 C2 H2 SING N N 17 SK3 O2 HO2 SING N N 18 SK3 C1 O1 SING N N 19 SK3 C1 H1 SING N N 20 SK3 O1 HO1 SING N N 21 SK3 C6 C7 SING N N 22 SK3 C6 H61 SING N N 23 SK3 C6 H62 SING N N 24 SK3 C7 C12 DOUB Y N 25 SK3 C7 C8 SING Y N 26 SK3 C12 C11 SING Y N 27 SK3 C12 H12 SING N N 28 SK3 C11 C10 DOUB Y N 29 SK3 C11 H11 SING N N 30 SK3 C8 C9 DOUB Y N 31 SK3 C8 H8 SING N N 32 SK3 C9 C10 SING Y N 33 SK3 C9 H9 SING N N 34 SK3 C10 H10 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SK3 SMILES ACDLabs 10.04 "OC2C(NCc1ccccc1)C(O)C(O)C2O" SK3 SMILES_CANONICAL CACTVS 3.341 "O[C@H]1[C@@H](O)[C@@H](O)[C@@H](NCc2ccccc2)[C@H]1O" SK3 SMILES CACTVS 3.341 "O[CH]1[CH](O)[CH](O)[CH](NCc2ccccc2)[CH]1O" SK3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)CNC2[C@H]([C@H]([C@H]([C@H]2O)O)O)O" SK3 SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)CNC2C(C(C(C2O)O)O)O" SK3 InChI InChI 1.03 "InChI=1S/C12H17NO4/c14-9-8(10(15)12(17)11(9)16)13-6-7-4-2-1-3-5-7/h1-5,8-17H,6H2/t8-,9+,10-,11+,12-" SK3 InChIKey InChI 1.03 AQARFUBRAYWQBH-NMZKHRHQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SK3 "SYSTEMATIC NAME" ACDLabs 10.04 "(1R,2R,3S,4S,5r)-5-(benzylamino)cyclopentane-1,2,3,4-tetrol" SK3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(1S,2S,3R,4R)-5-(phenylmethylamino)cyclopentane-1,2,3,4-tetrol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SK3 "Create component" 2006-01-24 RCSB SK3 "Modify descriptor" 2011-06-04 RCSB #