data_SK6 # _chem_comp.id SK6 _chem_comp.name "3-[2-(6-amino-4-methylpyridin-2-yl)ethyl]-5-{[2-(pyridin-2-yl)ethyl]amino}benzonitrile" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H23 N5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-10-23 _chem_comp.pdbx_modified_date 2015-01-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 357.452 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SK6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4D3N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SK6 N01 N01 N 0 1 Y N N 3.033 16.311 25.461 -5.439 -0.475 0.156 N01 SK6 1 SK6 C02 C02 C 0 1 Y N N 2.320 17.317 25.955 -6.709 -0.200 0.408 C02 SK6 2 SK6 C03 C03 C 0 1 Y N N 2.219 18.511 25.232 -7.229 1.061 0.134 C03 SK6 3 SK6 C04 C04 C 0 1 Y N N 2.887 18.601 24.009 -6.399 2.027 -0.406 C04 SK6 4 SK6 C05 C05 C 0 1 Y N N 3.634 17.516 23.532 -5.073 1.698 -0.655 C05 SK6 5 SK6 C06 C06 C 0 1 Y N N 3.700 16.350 24.298 -4.625 0.427 -0.359 C06 SK6 6 SK6 N07 N07 N 0 1 N N N 1.717 17.138 27.144 -7.531 -1.181 0.951 N07 SK6 7 SK6 C08 C08 C 0 1 N N N 2.814 19.783 23.277 -6.923 3.405 -0.718 C08 SK6 8 SK6 C09 C09 C 0 1 N N N 4.390 15.165 23.921 -3.187 0.064 -0.627 C09 SK6 9 SK6 C10 C10 C 0 1 N N N 5.803 15.364 23.374 -2.546 -0.465 0.658 C10 SK6 10 SK6 C11 C11 C 0 1 Y N N 6.436 14.133 23.011 -1.108 -0.827 0.390 C11 SK6 11 SK6 C12 C12 C 0 1 Y N N 6.131 12.881 23.578 -0.116 0.120 0.559 C12 SK6 12 SK6 C13 C13 C 0 1 Y N N 6.793 11.722 23.156 1.213 -0.207 0.314 C13 SK6 13 SK6 C14 C14 C 0 1 Y N N 7.822 11.819 22.214 1.547 -1.487 -0.101 C14 SK6 14 SK6 C15 C15 C 0 1 Y N N 8.141 13.056 21.653 0.545 -2.443 -0.271 C15 SK6 15 SK6 C16 C16 C 0 1 Y N N 7.450 14.187 22.059 -0.786 -2.106 -0.017 C16 SK6 16 SK6 N17 N17 N 0 1 N N N 6.465 10.539 23.706 2.211 0.755 0.486 N17 SK6 17 SK6 C18 C18 C 0 1 N N N 7.070 9.214 23.384 3.612 0.411 0.227 C18 SK6 18 SK6 C19 C19 C 0 1 N N N 5.830 8.395 22.945 4.494 1.633 0.488 C19 SK6 19 SK6 C20 C20 C 0 1 Y N N 5.980 7.054 22.551 5.935 1.279 0.223 C20 SK6 20 SK6 N21 N21 N 0 1 Y N N 4.850 6.364 22.310 6.478 0.250 0.844 N21 SK6 21 SK6 C22 C22 C 0 1 Y N N 4.873 5.023 21.900 7.734 -0.096 0.642 C22 SK6 22 SK6 C23 C23 C 0 1 Y N N 6.097 4.390 21.746 8.532 0.614 -0.234 C23 SK6 23 SK6 C24 C24 C 0 1 Y N N 7.264 5.101 22.000 7.996 1.702 -0.906 C24 SK6 24 SK6 C25 C25 C 0 1 Y N N 7.209 6.430 22.399 6.669 2.033 -0.673 C25 SK6 25 SK6 C26 C26 C 0 1 N N N 9.201 13.208 20.635 0.882 -3.767 -0.699 C26 SK6 26 SK6 N27 N27 N 0 1 N N N 10.071 13.352 19.801 1.149 -4.818 -1.039 N27 SK6 27 SK6 H03 H03 H 0 1 N N N 1.640 19.341 25.610 -8.265 1.283 0.340 H03 SK6 28 SK6 H05 H05 H 0 1 N N N 4.151 17.580 22.586 -4.400 2.430 -1.077 H05 SK6 29 SK6 HN07 HN07 H 0 0 N N N 1.916 16.219 27.484 -7.174 -2.061 1.144 HN07 SK6 30 SK6 HN0A HN0A H 0 0 N N N 2.058 17.816 27.796 -8.463 -0.984 1.138 HN0A SK6 31 SK6 H08 H08 H 0 1 N N N 3.636 20.451 23.575 -6.795 4.048 0.153 H08 SK6 32 SK6 H08A H08A H 0 0 N N N 2.898 19.555 22.204 -6.371 3.821 -1.561 H08A SK6 33 SK6 H08B H08B H 0 0 N N N 1.851 20.277 23.473 -7.981 3.343 -0.972 H08B SK6 34 SK6 H09 H09 H 0 1 N N N 4.459 14.518 24.808 -3.144 -0.705 -1.398 H09 SK6 35 SK6 H09A H09A H 0 0 N N N 3.796 14.661 23.145 -2.646 0.948 -0.965 H09A SK6 36 SK6 H10 H10 H 0 1 N N N 5.748 16.007 22.483 -2.589 0.305 1.429 H10 SK6 37 SK6 H10A H10A H 0 0 N N N 6.412 15.858 24.145 -3.087 -1.348 0.997 H10A SK6 38 SK6 H12 H12 H 0 1 N N N 5.377 12.814 24.348 -0.374 1.118 0.882 H12 SK6 39 SK6 H14 H14 H 0 1 N N N 8.370 10.936 21.921 2.578 -1.742 -0.292 H14 SK6 40 SK6 H16 H16 H 0 1 N N N 7.707 15.141 21.623 -1.564 -2.844 -0.144 H16 SK6 41 SK6 HN17 HN17 H 0 0 N N N 6.610 10.660 24.688 1.978 1.651 0.775 HN17 SK6 42 SK6 H18 H18 H 0 1 N N N 7.804 9.297 22.569 3.914 -0.403 0.887 H18 SK6 43 SK6 H18A H18A H 0 0 N N N 7.551 8.769 24.267 3.724 0.097 -0.811 H18A SK6 44 SK6 H19 H19 H 0 1 N N N 5.129 8.401 23.792 4.192 2.447 -0.171 H19 SK6 45 SK6 H19A H19A H 0 0 N N N 5.382 8.928 22.094 4.383 1.947 1.526 H19A SK6 46 SK6 H22 H22 H 0 1 N N N 3.952 4.492 21.707 8.145 -0.945 1.169 H22 SK6 47 SK6 H23 H23 H 0 1 N N N 6.143 3.357 21.433 9.560 0.326 -0.394 H23 SK6 48 SK6 H24 H24 H 0 1 N N N 8.222 4.616 21.886 8.595 2.276 -1.596 H24 SK6 49 SK6 H25 H25 H 0 1 N N N 8.121 6.976 22.590 6.218 2.871 -1.182 H25 SK6 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SK6 N01 C02 DOUB Y N 1 SK6 N01 C06 SING Y N 2 SK6 C02 C03 SING Y N 3 SK6 C02 N07 SING N N 4 SK6 C03 C04 DOUB Y N 5 SK6 C04 C05 SING Y N 6 SK6 C04 C08 SING N N 7 SK6 C05 C06 DOUB Y N 8 SK6 C06 C09 SING N N 9 SK6 C09 C10 SING N N 10 SK6 C10 C11 SING N N 11 SK6 C11 C12 DOUB Y N 12 SK6 C11 C16 SING Y N 13 SK6 C12 C13 SING Y N 14 SK6 C13 C14 DOUB Y N 15 SK6 C13 N17 SING N N 16 SK6 C14 C15 SING Y N 17 SK6 C15 C16 DOUB Y N 18 SK6 C15 C26 SING N N 19 SK6 N17 C18 SING N N 20 SK6 C18 C19 SING N N 21 SK6 C19 C20 SING N N 22 SK6 C20 N21 DOUB Y N 23 SK6 C20 C25 SING Y N 24 SK6 N21 C22 SING Y N 25 SK6 C22 C23 DOUB Y N 26 SK6 C23 C24 SING Y N 27 SK6 C24 C25 DOUB Y N 28 SK6 C26 N27 TRIP N N 29 SK6 C03 H03 SING N N 30 SK6 C05 H05 SING N N 31 SK6 N07 HN07 SING N N 32 SK6 N07 HN0A SING N N 33 SK6 C08 H08 SING N N 34 SK6 C08 H08A SING N N 35 SK6 C08 H08B SING N N 36 SK6 C09 H09 SING N N 37 SK6 C09 H09A SING N N 38 SK6 C10 H10 SING N N 39 SK6 C10 H10A SING N N 40 SK6 C12 H12 SING N N 41 SK6 C14 H14 SING N N 42 SK6 C16 H16 SING N N 43 SK6 N17 HN17 SING N N 44 SK6 C18 H18 SING N N 45 SK6 C18 H18A SING N N 46 SK6 C19 H19 SING N N 47 SK6 C19 H19A SING N N 48 SK6 C22 H22 SING N N 49 SK6 C23 H23 SING N N 50 SK6 C24 H24 SING N N 51 SK6 C25 H25 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SK6 SMILES ACDLabs 12.01 "N#Cc2cc(cc(NCCc1ncccc1)c2)CCc3nc(N)cc(c3)C" SK6 InChI InChI 1.03 "InChI=1S/C22H23N5/c1-16-10-20(27-22(24)11-16)6-5-17-12-18(15-23)14-21(13-17)26-9-7-19-4-2-3-8-25-19/h2-4,8,10-14,26H,5-7,9H2,1H3,(H2,24,27)" SK6 InChIKey InChI 1.03 MPQMVSXQSZLJJB-UHFFFAOYSA-N SK6 SMILES_CANONICAL CACTVS 3.385 "Cc1cc(N)nc(CCc2cc(NCCc3ccccn3)cc(c2)C#N)c1" SK6 SMILES CACTVS 3.385 "Cc1cc(N)nc(CCc2cc(NCCc3ccccn3)cc(c2)C#N)c1" SK6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1cc(nc(c1)N)CCc2cc(cc(c2)NCCc3ccccn3)C#N" SK6 SMILES "OpenEye OEToolkits" 1.7.6 "Cc1cc(nc(c1)N)CCc2cc(cc(c2)NCCc3ccccn3)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SK6 "SYSTEMATIC NAME" ACDLabs 12.01 "3-[2-(6-amino-4-methylpyridin-2-yl)ethyl]-5-{[2-(pyridin-2-yl)ethyl]amino}benzonitrile" SK6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-[2-(6-azanyl-4-methyl-pyridin-2-yl)ethyl]-5-(2-pyridin-2-ylethylamino)benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SK6 "Create component" 2014-10-23 EBI SK6 "Initial release" 2015-01-14 RCSB #