data_SKC # _chem_comp.id SKC _chem_comp.name "(2E,4aR,7aS)-6-[3-(4-chlorophenyl)pyridin-2-yl]-7a-(2,5-difluorophenyl)-2-imino-3-methyloctahydro-4H-pyrrolo[3,4-d]pyrimidin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H20 Cl F2 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-28 _chem_comp.pdbx_modified_date 2024-08-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 467.898 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SKC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8TYG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SKC N1 N1 N 0 1 Y N N N N N 37.892 30.501 22.837 -0.602 2.854 0.989 N1 SKC 1 SKC C7 C1 C 0 1 Y N N N N N 40.043 25.308 20.408 -5.403 -0.219 -0.846 C7 SKC 2 SKC C8 C2 C 0 1 Y N N N N N 41.146 25.092 21.202 -5.121 -1.480 -0.349 C8 SKC 3 SKC N2 N2 N 0 1 N N N N N N 35.821 27.241 24.904 2.376 1.267 0.542 N2 SKC 4 SKC C9 C3 C 0 1 Y N N N N N 41.513 26.002 22.170 -4.067 -1.663 0.530 C9 SKC 5 SKC C6 C4 C 0 1 Y N N N N N 39.310 26.469 20.569 -4.631 0.862 -0.472 C6 SKC 6 SKC N3 N3 N 0 1 N N N N N N 35.400 28.409 26.922 3.297 1.475 -1.625 N3 SKC 7 SKC N4 N4 N 0 1 N N N N N N 33.711 28.186 25.423 4.571 2.018 0.237 N4 SKC 8 SKC C10 C5 C 0 1 Y N N N N N 40.778 27.164 22.319 -3.292 -0.588 0.914 C10 SKC 9 SKC C11 C6 C 0 1 Y N N N N N 39.672 27.430 21.512 -3.565 0.682 0.409 C11 SKC 10 SKC C12 C7 C 0 1 Y N N N N N 38.960 28.733 21.586 -2.732 1.840 0.814 C12 SKC 11 SKC C13 C8 C 0 1 Y N N N N N 38.881 29.516 20.432 -3.317 2.967 1.390 C13 SKC 12 SKC C14 C9 C 0 1 Y N N N N N 38.316 30.777 20.498 -2.495 4.023 1.753 C14 SKC 13 SKC C15 C10 C 0 1 Y N N N N N 37.849 31.226 21.709 -1.134 3.931 1.536 C15 SKC 14 SKC C16 C11 C 0 1 Y N N N N N 38.438 24.963 26.340 1.800 -2.428 0.216 C16 SKC 15 SKC C17 C12 C 0 1 Y N N N N N 38.517 23.747 26.969 2.507 -3.588 0.482 C17 SKC 16 SKC C18 C13 C 0 1 Y N N N N N 37.351 23.046 27.219 3.784 -3.514 1.005 C18 SKC 17 SKC C19 C14 C 0 1 Y N N N N N 36.167 23.602 26.814 4.356 -2.281 1.263 C19 SKC 18 SKC C20 C15 C 0 1 Y N N N N N 36.073 24.813 26.166 3.649 -1.120 0.996 C20 SKC 19 SKC C21 C16 C 0 1 Y N N N N N 38.411 29.266 22.783 -1.343 1.820 0.626 C21 SKC 20 SKC C22 C17 C 0 1 Y N N N N N 37.240 25.530 25.921 2.372 -1.194 0.474 C22 SKC 21 SKC C23 C18 C 0 1 N N S N N N 37.192 26.904 25.268 1.603 0.069 0.184 C23 SKC 22 SKC C24 C19 C 0 1 N N R N N N 37.716 28.033 26.197 1.194 0.160 -1.301 C24 SKC 23 SKC C25 C20 C 0 1 N N N N N N 36.735 28.481 27.255 2.262 0.793 -2.132 C25 SKC 24 SKC C26 C21 C 0 1 N N N N N N 34.965 27.937 25.699 3.443 1.609 -0.268 C26 SKC 25 SKC C27 C22 C 0 1 N N N N N N 34.428 28.873 27.908 4.261 2.114 -2.526 C27 SKC 26 SKC C28 C23 C 0 1 N N N N N N 38.064 27.050 24.015 0.264 0.111 0.952 C28 SKC 27 SKC C29 C24 C 0 1 N N N N N N 38.044 29.170 25.218 -0.053 1.071 -1.250 C29 SKC 28 SKC F32 F1 F 0 1 N N N N N N 39.586 25.648 26.138 0.553 -2.500 -0.301 F32 SKC 29 SKC F33 F2 F 0 1 N N N N N N 35.017 22.936 27.088 5.604 -2.209 1.775 F33 SKC 30 SKC N5 N5 N 0 1 N N N N N N 38.250 28.502 23.934 -0.741 0.707 0.054 N5 SKC 31 SKC O30 O1 O 0 1 N N N N N N 37.107 28.897 28.337 2.196 0.669 -3.336 O30 SKC 32 SKC CL31 CL1 CL 0 0 N N N N N N 42.106 23.658 20.962 -6.093 -2.836 -0.828 CL31 SKC 33 SKC HC7 H1 H 0 1 N N N N N N 39.753 24.578 19.667 -6.227 -0.081 -1.531 HC7 SKC 34 SKC HN2 H2 H 0 1 N N N N N N 35.488 26.940 24.010 2.143 1.801 1.317 HN2 SKC 35 SKC HC9 H3 H 0 1 N N N N N N 42.365 25.810 22.805 -3.851 -2.648 0.915 HC9 SKC 36 SKC HC6 H4 H 0 1 N N N N N N 38.439 26.635 19.952 -4.852 1.845 -0.860 HC6 SKC 37 SKC HN4 H5 H 0 1 N N N N N N 33.258 28.690 26.159 5.299 2.276 -0.350 HN4 SKC 38 SKC HC10 H6 H 0 0 N N N N N N 41.066 27.879 23.075 -2.470 -0.731 1.600 HC10 SKC 39 SKC HC13 H7 H 0 0 N N N N N N 39.259 29.139 19.493 -4.384 3.016 1.550 HC13 SKC 40 SKC HC14 H8 H 0 0 N N N N N N 38.244 31.396 19.616 -2.916 4.911 2.201 HC14 SKC 41 SKC HC15 H9 H 0 0 N N N N N N 37.424 32.218 21.756 -0.495 4.754 1.818 HC15 SKC 42 SKC HC17 H10 H 0 0 N N N N N N 39.474 23.343 27.264 2.060 -4.551 0.281 HC17 SKC 43 SKC HC18 H11 H 0 0 N N N N N N 37.374 22.089 27.719 4.335 -4.420 1.213 HC18 SKC 44 SKC HC20 H12 H 0 0 N N N N N N 35.113 25.198 25.854 4.095 -0.158 1.198 HC20 SKC 45 SKC HC24 H13 H 0 0 N N N N N N 38.645 27.694 26.679 0.946 -0.828 -1.690 HC24 SKC 46 SKC H27A H14 H 0 0 N N N N N N 34.955 29.209 28.813 5.119 1.456 -2.664 H27A SKC 47 SKC H27B H15 H 0 0 N N N N N N 33.851 29.710 27.488 3.788 2.301 -3.490 H27B SKC 48 SKC H27C H16 H 0 0 N N N N N N 33.746 28.050 28.166 4.592 3.058 -2.093 H27C SKC 49 SKC H28A H17 H 0 0 N N N N N N 39.026 26.531 24.136 -0.037 -0.900 1.225 H28A SKC 50 SKC H28B H18 H 0 0 N N N N N N 37.549 26.664 23.123 0.371 0.720 1.849 H28B SKC 51 SKC H29B H19 H 0 0 N N N N N N 38.955 29.701 25.530 0.245 2.119 -1.238 H29B SKC 52 SKC H29A H20 H 0 0 N N N N N N 37.208 29.882 25.156 -0.702 0.872 -2.103 H29A SKC 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SKC N1 C21 DOUB Y N 1 SKC N2 C23 SING N N 2 SKC N2 C26 SING N N 3 SKC N3 C26 SING N N 4 SKC N3 C27 SING N N 5 SKC N5 C29 SING N N 6 SKC C6 C7 DOUB Y N 7 SKC C6 C11 SING Y N 8 SKC C7 C8 SING Y N 9 SKC C8 C9 DOUB Y N 10 SKC C9 C10 SING Y N 11 SKC C10 C11 DOUB Y N 12 SKC C11 C12 SING N N 13 SKC C12 C13 DOUB Y N 14 SKC C12 C21 SING Y N 15 SKC C13 C14 SING Y N 16 SKC C14 C15 DOUB Y N 17 SKC N1 C15 SING Y N 18 SKC C16 C17 DOUB Y N 19 SKC C16 C22 SING Y N 20 SKC C17 C18 SING Y N 21 SKC C18 C19 DOUB Y N 22 SKC C19 C20 SING Y N 23 SKC C20 C22 DOUB Y N 24 SKC N5 C21 SING N N 25 SKC C22 C23 SING N N 26 SKC C23 C24 SING N N 27 SKC C23 C28 SING N N 28 SKC C24 C25 SING N N 29 SKC C24 C29 SING N N 30 SKC N3 C25 SING N N 31 SKC C25 O30 DOUB N N 32 SKC N4 C26 DOUB N N 33 SKC N5 C28 SING N N 34 SKC C8 CL31 SING N N 35 SKC C16 F32 SING N N 36 SKC C19 F33 SING N N 37 SKC C7 HC7 SING N N 38 SKC N2 HN2 SING N N 39 SKC C9 HC9 SING N N 40 SKC C6 HC6 SING N N 41 SKC N4 HN4 SING N N 42 SKC C10 HC10 SING N N 43 SKC C13 HC13 SING N N 44 SKC C14 HC14 SING N N 45 SKC C15 HC15 SING N N 46 SKC C17 HC17 SING N N 47 SKC C18 HC18 SING N N 48 SKC C20 HC20 SING N N 49 SKC C24 HC24 SING N N 50 SKC C27 H27A SING N N 51 SKC C27 H27B SING N N 52 SKC C27 H27C SING N N 53 SKC C28 H28A SING N N 54 SKC C28 H28B SING N N 55 SKC C29 H29B SING N N 56 SKC C29 H29A SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SKC SMILES ACDLabs 12.01 "Clc1ccc(cc1)c1cccnc1N1CC2(NC(=N)N(C)C(=O)C2C1)c1cc(F)ccc1F" SKC InChI InChI 1.06 "InChI=1S/C24H20ClF2N5O/c1-31-22(33)19-12-32(21-17(3-2-10-29-21)14-4-6-15(25)7-5-14)13-24(19,30-23(31)28)18-11-16(26)8-9-20(18)27/h2-11,19H,12-13H2,1H3,(H2,28,30)/t19-,24+/m0/s1" SKC InChIKey InChI 1.06 JZQJSLYBFWXABF-YADARESESA-N SKC SMILES_CANONICAL CACTVS 3.385 "CN1C(=N)N[C@]2(CN(C[C@H]2C1=O)c3ncccc3c4ccc(Cl)cc4)c5cc(F)ccc5F" SKC SMILES CACTVS 3.385 "CN1C(=N)N[C]2(CN(C[CH]2C1=O)c3ncccc3c4ccc(Cl)cc4)c5cc(F)ccc5F" SKC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C/1\N[C@]2(CN(C[C@H]2C(=O)N1C)c3c(cccn3)c4ccc(cc4)Cl)c5cc(ccc5F)F" SKC SMILES "OpenEye OEToolkits" 2.0.7 "CN1C(=O)C2CN(CC2(NC1=N)c3cc(ccc3F)F)c4c(cccn4)c5ccc(cc5)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SKC "SYSTEMATIC NAME" ACDLabs 12.01 "(2E,4aR,7aS)-6-[3-(4-chlorophenyl)pyridin-2-yl]-7a-(2,5-difluorophenyl)-2-imino-3-methyloctahydro-4H-pyrrolo[3,4-d]pyrimidin-4-one" SKC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4~{a}~{R},7~{a}~{S})-2-azanylidene-7~{a}-[2,5-bis(fluoranyl)phenyl]-6-[3-(4-chlorophenyl)pyridin-2-yl]-3-methyl-1,4~{a},5,7-tetrahydropyrrolo[3,4-d]pyrimidin-4-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SKC "Create component" 2023-08-28 RCSB SKC "Initial release" 2024-08-28 RCSB #