data_SKH # _chem_comp.id SKH _chem_comp.name "(3~{S})-5-[[(5~{S})-5-azanyl-6-oxidanyl-6-oxidanylidene-hexyl]amino]-3-methyl-3-oxidanyl-5-oxidanylidene-pentanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C12 H22 N2 O6" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-07-22 _chem_comp.pdbx_modified_date 2017-11-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 290.313 _chem_comp.one_letter_code K _chem_comp.three_letter_code SKH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5OJO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SKH O O1 O 0 1 N N N 32.998 21.294 0.862 -7.488 -0.358 0.938 O SKH 1 SKH C C1 C 0 1 N N N 31.884 21.360 1.379 -6.787 -0.652 -0.001 C SKH 2 SKH CA C2 C 0 1 N N S 31.380 22.646 2.060 -5.612 0.220 -0.365 CA SKH 3 SKH N N1 N 0 1 N N N 32.245 22.929 3.195 -5.796 1.557 0.214 N SKH 4 SKH CB C3 C 0 1 N N N 31.202 23.828 1.121 -4.326 -0.402 0.183 CB SKH 5 SKH CG C4 C 0 1 N N N 31.910 23.472 -0.155 -3.122 0.414 -0.292 CG SKH 6 SKH CD C5 C 0 1 N N N 30.933 23.949 -1.219 -1.837 -0.207 0.256 CD SKH 7 SKH CE C6 C 0 1 N N N 31.633 23.484 -2.448 -0.633 0.609 -0.219 CE SKH 8 SKH NZ N2 N 0 1 N N N 31.512 24.559 -3.441 0.599 0.014 0.306 NZ SKH 9 SKH CAK C7 C 0 1 N N N 31.036 24.414 -4.687 1.792 0.568 0.015 CAK SKH 10 SKH OAT O2 O 0 1 N N N 30.581 23.375 -5.174 1.847 1.559 -0.682 OAT SKH 11 SKH CAL C8 C 0 1 N N N 31.129 25.704 -5.494 3.059 -0.044 0.555 CAL SKH 12 SKH CAM C9 C 0 1 N N S 29.771 26.108 -6.043 4.263 0.772 0.080 CAM SKH 13 SKH CAR C10 C 0 1 N N N 29.709 27.624 -6.010 4.135 2.211 0.586 CAR SKH 14 SKH OAS O3 O 0 1 N N N 28.714 25.527 -5.265 4.305 0.771 -1.349 OAS SKH 15 SKH CAN C11 C 0 1 N N N 29.698 25.712 -7.504 5.549 0.151 0.628 CAN SKH 16 SKH CAO C12 C 0 1 N N N 30.621 26.677 -8.246 5.673 -1.267 0.132 CAO SKH 17 SKH OAQ O4 O 0 1 N N N 31.006 26.329 -9.380 4.870 -1.703 -0.659 OAQ SKH 18 SKH OAP O5 O 0 1 N N N 30.922 27.747 -7.670 6.676 -2.045 0.569 OAP SKH 19 SKH H2 H2 H 0 1 N N N 30.382 22.412 2.460 -5.543 0.300 -1.450 H2 SKH 20 SKH H3 H3 H 0 1 N N N 32.319 22.114 3.770 -6.604 2.014 -0.181 H3 SKH 21 SKH H4 H4 H 0 1 N N N 33.153 23.188 2.866 -5.863 1.509 1.220 H4 SKH 22 SKH H6 H6 H 0 1 N N N 31.646 24.733 1.562 -4.358 -0.401 1.273 H6 SKH 23 SKH H7 H7 H 0 1 N N N 30.133 24.001 0.927 -4.236 -1.426 -0.177 H7 SKH 24 SKH H8 H8 H 0 1 N N N 32.078 22.387 -0.227 -3.091 0.414 -1.382 H8 SKH 25 SKH H9 H9 H 0 1 N N N 32.873 23.998 -0.235 -3.213 1.439 0.068 H9 SKH 26 SKH H10 H10 H 0 1 N N N 30.818 25.043 -1.205 -1.868 -0.206 1.346 H10 SKH 27 SKH H11 H11 H 0 1 N N N 29.947 23.475 -1.108 -1.746 -1.232 -0.104 H11 SKH 28 SKH H12 H12 H 0 1 N N N 31.162 22.565 -2.827 -0.601 0.608 -1.309 H12 SKH 29 SKH H13 H13 H 0 1 N N N 32.693 23.289 -2.229 -0.723 1.634 0.141 H13 SKH 30 SKH H14 H14 H 0 1 N N N 31.809 25.474 -3.166 0.555 -0.779 0.863 H14 SKH 31 SKH H15 H15 H 0 1 N N N 31.825 25.553 -6.333 3.027 -0.043 1.645 H15 SKH 32 SKH H16 H16 H 0 1 N N N 31.507 26.507 -4.844 3.150 -1.069 0.195 H16 SKH 33 SKH H17 H17 H 0 1 N N N 29.758 27.971 -4.967 3.971 2.204 1.663 H17 SKH 34 SKH H18 H18 H 0 1 N N N 30.557 28.038 -6.575 5.051 2.757 0.361 H18 SKH 35 SKH H19 H19 H 0 1 N N N 28.766 27.962 -6.465 3.293 2.696 0.093 H19 SKH 36 SKH H20 H20 H 0 1 N N N 28.968 24.655 -4.986 4.385 -0.110 -1.739 H20 SKH 37 SKH H21 H21 H 0 1 N N N 28.667 25.807 -7.875 6.406 0.731 0.288 H21 SKH 38 SKH H22 H22 H 0 1 N N N 30.041 24.675 -7.637 5.517 0.153 1.718 H22 SKH 39 SKH H23 H23 H 0 1 N N N 31.493 28.259 -8.231 6.714 -2.947 0.222 H23 SKH 40 SKH OXT OXT O 0 1 N Y N 33.005 21.285 0.861 -7.050 -1.757 -0.715 OXT SKH 41 SKH H1 H1 H 0 1 N N N 33.254 22.136 0.519 -7.811 -2.286 -0.440 H1 SKH 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SKH OAQ CAO DOUB N N 1 SKH CAO OAP SING N N 2 SKH CAO CAN SING N N 3 SKH CAN CAM SING N N 4 SKH CAM CAR SING N N 5 SKH CAM CAL SING N N 6 SKH CAM OAS SING N N 7 SKH CAL CAK SING N N 8 SKH OAT CAK DOUB N N 9 SKH CAK NZ SING N N 10 SKH NZ CE SING N N 11 SKH CE CD SING N N 12 SKH CD CG SING N N 13 SKH CG CB SING N N 14 SKH O C DOUB N N 15 SKH CB CA SING N N 16 SKH C CA SING N N 17 SKH CA N SING N N 18 SKH CA H2 SING N N 19 SKH N H3 SING N N 20 SKH N H4 SING N N 21 SKH CB H6 SING N N 22 SKH CB H7 SING N N 23 SKH CG H8 SING N N 24 SKH CG H9 SING N N 25 SKH CD H10 SING N N 26 SKH CD H11 SING N N 27 SKH CE H12 SING N N 28 SKH CE H13 SING N N 29 SKH NZ H14 SING N N 30 SKH CAL H15 SING N N 31 SKH CAL H16 SING N N 32 SKH CAR H17 SING N N 33 SKH CAR H18 SING N N 34 SKH CAR H19 SING N N 35 SKH OAS H20 SING N N 36 SKH CAN H21 SING N N 37 SKH CAN H22 SING N N 38 SKH OAP H23 SING N N 39 SKH C OXT SING N N 40 SKH OXT H1 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SKH InChI InChI 1.03 "InChI=1S/C12H22N2O6/c1-12(20,7-10(16)17)6-9(15)14-5-3-2-4-8(13)11(18)19/h8,20H,2-7,13H2,1H3,(H,14,15)(H,16,17)(H,18,19)/t8-,12-/m0/s1" SKH InChIKey InChI 1.03 AIRHRYXMAJQOFD-UFBFGSQYSA-N SKH SMILES_CANONICAL CACTVS 3.385 "C[C@@](O)(CC(O)=O)CC(=O)NCCCC[C@H](N)C(O)=O" SKH SMILES CACTVS 3.385 "C[C](O)(CC(O)=O)CC(=O)NCCCC[CH](N)C(O)=O" SKH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@](CC(=O)NCCCC[C@@H](C(=O)O)N)(CC(=O)O)O" SKH SMILES "OpenEye OEToolkits" 2.0.6 "CC(CC(=O)NCCCCC(C(=O)O)N)(CC(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SKH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(3~{S})-5-[[(5~{S})-5-azanyl-6-oxidanyl-6-oxidanylidene-hexyl]amino]-3-methyl-3-oxidanyl-5-oxidanylidene-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SKH "Create component" 2017-07-22 EBI SKH "Initial release" 2017-11-29 RCSB #