data_SKM # _chem_comp.id SKM _chem_comp.name "(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H10 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms SHIKIMATE _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-08-16 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 174.151 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SKM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1U8A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SKM O12 O12 O 0 1 N N N 36.950 -35.355 28.767 3.115 -0.170 0.414 O12 SKM 1 SKM C8 C8 C 0 1 N N S 36.229 -36.020 29.806 1.704 -0.047 0.598 C8 SKM 2 SKM C6 C6 C 0 1 N N R 37.213 -36.403 30.930 1.141 1.014 -0.355 C6 SKM 3 SKM O7 O7 O 0 1 N N N 36.505 -37.012 32.013 1.879 2.229 -0.210 O7 SKM 4 SKM C5 C5 C 0 1 N N N 37.952 -35.140 31.413 -0.328 1.260 -0.003 C5 SKM 5 SKM C4 C4 C 0 1 N N N 37.002 -33.949 31.648 -1.060 -0.047 0.099 C4 SKM 6 SKM C1 C1 C 0 1 N N N 37.533 -32.702 32.377 -2.528 -0.023 0.046 C1 SKM 7 SKM O2 O2 O 0 1 N N N 38.804 -32.552 32.558 -3.179 1.149 -0.090 O2 SKM 8 SKM O3 O3 O 0 1 N N N 36.721 -31.785 32.781 -3.156 -1.061 0.126 O3 SKM 9 SKM C10 C10 C 0 1 N N N 35.742 -33.933 31.177 -0.463 -1.212 0.233 C10 SKM 10 SKM C9 C9 C 0 1 N N R 35.134 -35.091 30.362 1.027 -1.384 0.291 C9 SKM 11 SKM O11 O11 O 0 1 N N N 34.349 -34.565 29.288 1.498 -1.868 -0.969 O11 SKM 12 SKM H12 H12 H 0 1 N N N 36.344 -35.119 28.075 3.418 -0.855 1.027 H12 SKM 13 SKM H8 H8 H 0 1 N N N 35.746 -36.939 29.400 1.492 0.243 1.627 H8 SKM 14 SKM H6 H6 H 0 1 N N N 37.958 -37.135 30.540 1.216 0.660 -1.384 H6 SKM 15 SKM HO7 HO7 H 0 1 N N N 37.111 -37.248 32.705 1.488 2.868 -0.822 HO7 SKM 16 SKM H51 1H5 H 0 1 N N N 38.774 -34.864 30.711 -0.388 1.783 0.951 H51 SKM 17 SKM H52 2H5 H 0 1 N N N 38.558 -35.355 32.324 -0.788 1.872 -0.778 H52 SKM 18 SKM HO2 HO2 H 0 1 N N N 39.132 -31.782 33.008 -4.146 1.164 -0.124 HO2 SKM 19 SKM H10 H10 H 0 1 N N N 35.223 -32.999 31.451 -1.080 -2.095 0.305 H10 SKM 20 SKM H9 H9 H 0 1 N N N 34.485 -35.692 31.041 1.278 -2.104 1.071 H9 SKM 21 SKM H11 H11 H 0 1 N N N 33.674 -33.992 29.631 1.060 -2.716 -1.124 H11 SKM 22 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SKM O12 C8 SING N N 1 SKM O12 H12 SING N N 2 SKM C8 C6 SING N N 3 SKM C8 C9 SING N N 4 SKM C8 H8 SING N N 5 SKM C6 O7 SING N N 6 SKM C6 C5 SING N N 7 SKM C6 H6 SING N N 8 SKM O7 HO7 SING N N 9 SKM C5 C4 SING N N 10 SKM C5 H51 SING N N 11 SKM C5 H52 SING N N 12 SKM C4 C1 SING N N 13 SKM C4 C10 DOUB N N 14 SKM C1 O2 SING N N 15 SKM C1 O3 DOUB N N 16 SKM O2 HO2 SING N N 17 SKM C10 C9 SING N N 18 SKM C10 H10 SING N N 19 SKM C9 O11 SING N N 20 SKM C9 H9 SING N N 21 SKM O11 H11 SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SKM SMILES ACDLabs 10.04 "O=C(O)C1=CC(O)C(O)C(O)C1" SKM SMILES_CANONICAL CACTVS 3.341 "O[C@@H]1CC(=C[C@@H](O)[C@H]1O)C(O)=O" SKM SMILES CACTVS 3.341 "O[CH]1CC(=C[CH](O)[CH]1O)C(O)=O" SKM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H]([C@@H]([C@@H](C=C1C(=O)O)O)O)O" SKM SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(C(C=C1C(=O)O)O)O)O" SKM InChI InChI 1.03 "InChI=1S/C7H10O5/c8-4-1-3(7(11)12)2-5(9)6(4)10/h1,4-6,8-10H,2H2,(H,11,12)/t4-,5-,6-/m1/s1" SKM InChIKey InChI 1.03 JXOHGGNKMLTUBP-HSUXUTPPSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SKM "SYSTEMATIC NAME" ACDLabs 10.04 "(3R,4S,5R)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid" SKM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(3R,4S,5R)-3,4,5-trihydroxycyclohexene-1-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SKM "Create component" 2004-08-16 RCSB SKM "Modify descriptor" 2011-06-04 RCSB SKM "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id SKM _pdbx_chem_comp_synonyms.name SHIKIMATE _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##