data_SKN # _chem_comp.id SKN _chem_comp.name "((R)-2-(3-ethylphenyl)-1-((S)-3-phenyl-2-(pyrazine-2-carboxamido)propanamido)ethyl)boronic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H27 B N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(1~{R})-2-(3-ethylphenyl)-1-[[(2~{S})-3-phenyl-2-(pyrazin-2-ylcarbonylamino)propanoyl]amino]ethyl]boronic acid; [2-(3-ethylphenyl)-1-[(2S)-3-phenyl-2-[(pyrazin-2-yl)formamido]propanamido]ethyl]boronic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-23 _chem_comp.pdbx_modified_date 2021-11-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 446.307 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SKN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7B12 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SKN C1 C1 C 0 1 N N R -14.077 17.748 -90.368 2.481 0.472 0.237 C1 SKN 1 SKN O4 O1 O 0 1 N N N -14.057 17.434 -87.696 2.985 2.730 1.403 O4 SKN 2 SKN N6 N1 N 0 1 N N N -14.138 19.205 -90.333 1.118 0.854 -0.140 N6 SKN 3 SKN C7 C2 C 0 1 Y N N -13.616 17.843 -92.891 4.831 0.349 -0.545 C7 SKN 4 SKN C8 C3 C 0 1 Y N N -14.958 18.014 -93.206 5.278 -0.938 -0.781 C8 SKN 5 SKN C9 C4 C 0 1 Y N N -15.368 18.305 -94.501 6.564 -1.298 -0.425 C9 SKN 6 SKN C10 C5 C 0 1 Y N N -14.405 18.419 -95.490 7.403 -0.372 0.168 C10 SKN 7 SKN C11 C6 C 0 1 Y N N -13.065 18.295 -95.183 6.956 0.914 0.403 C11 SKN 8 SKN C12 C7 C 0 1 Y N N -12.676 18.024 -93.889 5.671 1.276 0.042 C12 SKN 9 SKN C13 C8 C 0 1 N N N -15.125 19.793 -89.644 0.085 0.036 0.146 C13 SKN 10 SKN C14 C9 C 0 1 N N S -15.000 21.305 -89.471 -1.317 0.430 -0.242 C14 SKN 11 SKN C19 C10 C 0 1 Y N N -17.244 23.634 -91.430 -4.374 -1.825 -0.040 C19 SKN 12 SKN C20 C11 C 0 1 Y N N -14.057 21.037 -87.105 -3.039 2.202 -0.037 C20 SKN 13 SKN C21 C12 C 0 1 Y N N -12.702 21.187 -87.370 -3.137 3.026 -1.143 C21 SKN 14 SKN C22 C13 C 0 1 Y N N -11.750 20.627 -86.531 -4.377 3.450 -1.582 C22 SKN 15 SKN C24 C14 C 0 1 Y N N -13.472 19.756 -85.139 -5.423 2.223 0.189 C24 SKN 16 SKN C27 C15 C 0 1 Y N N -17.518 24.993 -91.400 -5.593 -1.979 -0.700 C27 SKN 17 SKN C30 C16 C 0 1 Y N N -19.394 23.237 -92.076 -4.905 -3.575 1.342 C30 SKN 18 SKN C32 C17 C 0 1 N N N -16.825 18.547 -94.815 7.051 -2.701 -0.681 C32 SKN 19 SKN C33 C18 C 0 1 N N N -17.090 19.523 -95.928 7.690 -2.773 -2.069 C33 SKN 20 SKN B2 B1 B 0 1 N N N -13.343 17.273 -89.014 2.934 1.313 1.483 B2 SKN 21 SKN O3 O2 O 0 1 N N N -11.961 17.820 -88.848 3.294 0.657 2.690 O3 SKN 22 SKN C5 C19 C 0 1 N N N -13.202 17.309 -91.541 3.428 0.742 -0.933 C5 SKN 23 SKN O15 O3 O 0 1 N N N -16.098 19.188 -89.188 0.284 -1.016 0.715 O15 SKN 24 SKN N16 N2 N 0 1 N N N -16.081 21.907 -90.222 -2.251 -0.618 0.176 N16 SKN 25 SKN C17 C20 C 0 1 N N N -15.099 21.689 -87.985 -1.686 1.746 0.445 C17 SKN 26 SKN C18 C21 C 0 1 N N N -15.978 23.109 -90.801 -3.429 -0.765 -0.463 C18 SKN 27 SKN C23 C22 C 0 1 Y N N -12.138 19.907 -85.420 -5.520 3.048 -0.916 C23 SKN 28 SKN C25 C23 C 0 1 Y N N -14.429 20.313 -85.975 -4.182 1.801 0.629 C25 SKN 29 SKN O26 O4 O 0 1 N N N -14.946 23.776 -90.774 -3.716 -0.028 -1.385 O26 SKN 30 SKN N28 N3 N 0 1 Y N N -18.743 25.472 -91.651 -6.432 -2.925 -0.319 N28 SKN 31 SKN C29 C24 C 0 1 Y N N -19.678 24.581 -91.980 -6.117 -3.725 0.684 C29 SKN 32 SKN N31 N4 N 0 1 Y N N -18.175 22.747 -91.807 -4.064 -2.629 0.973 N31 SKN 33 SKN H1 H1 H 0 1 N N N -15.077 17.294 -90.430 2.505 -0.589 0.487 H1 SKN 34 SKN H2 H2 H 0 1 N N N -13.504 17.112 -86.994 3.276 3.160 2.219 H2 SKN 35 SKN H3 H3 H 0 1 N N N -13.456 19.755 -90.815 0.958 1.696 -0.595 H3 SKN 36 SKN H4 H4 H 0 1 N N N -15.699 17.919 -92.427 4.623 -1.661 -1.243 H4 SKN 37 SKN H5 H5 H 0 1 N N N -14.705 18.607 -96.510 8.406 -0.655 0.449 H5 SKN 38 SKN H6 H6 H 0 1 N N N -12.321 18.410 -95.957 7.611 1.638 0.865 H6 SKN 39 SKN H7 H7 H 0 1 N N N -11.625 17.952 -93.652 5.322 2.282 0.226 H7 SKN 40 SKN H8 H8 H 0 1 N N N -14.028 21.637 -89.865 -1.373 0.556 -1.323 H8 SKN 41 SKN H9 H9 H 0 1 N N N -12.386 21.746 -88.239 -2.244 3.340 -1.663 H9 SKN 42 SKN H10 H10 H 0 1 N N N -10.700 20.755 -86.748 -4.454 4.094 -2.445 H10 SKN 43 SKN H11 H11 H 0 1 N N N -13.778 19.202 -84.264 -6.316 1.910 0.710 H11 SKN 44 SKN H12 H12 H 0 1 N N N -16.721 25.684 -91.168 -5.851 -1.324 -1.520 H12 SKN 45 SKN H13 H13 H 0 1 N N N -20.177 22.557 -92.377 -4.652 -4.231 2.162 H13 SKN 46 SKN H14 H14 H 0 1 N N N -17.310 18.930 -93.905 7.790 -2.973 0.073 H14 SKN 47 SKN H15 H15 H 0 1 N N N -17.277 17.584 -95.093 6.210 -3.393 -0.632 H15 SKN 48 SKN H16 H16 H 0 1 N N N -18.175 19.627 -96.075 8.042 -3.788 -2.255 H16 SKN 49 SKN H17 H17 H 0 1 N N N -16.660 20.502 -95.667 6.951 -2.502 -2.824 H17 SKN 50 SKN H18 H18 H 0 1 N N N -16.628 19.155 -96.856 8.531 -2.082 -2.119 H18 SKN 51 SKN H19 H19 H 0 1 N N N -11.590 17.502 -88.034 3.559 1.257 3.400 H19 SKN 52 SKN H20 H20 H 0 1 N N N -13.224 16.210 -91.589 3.114 0.158 -1.798 H20 SKN 53 SKN H21 H21 H 0 1 N N N -12.174 17.647 -91.343 3.404 1.803 -1.182 H21 SKN 54 SKN H22 H22 H 0 1 N N N -16.940 21.404 -90.312 -2.023 -1.207 0.912 H22 SKN 55 SKN H23 H23 H 0 1 N N N -14.986 22.780 -87.903 -1.717 1.596 1.525 H23 SKN 56 SKN H24 H24 H 0 1 N N N -16.093 21.394 -87.618 -0.940 2.503 0.205 H24 SKN 57 SKN H25 H25 H 0 1 N N N -11.394 19.464 -84.774 -6.489 3.379 -1.258 H25 SKN 58 SKN H26 H26 H 0 1 N N N -15.477 20.183 -85.746 -4.106 1.157 1.493 H26 SKN 59 SKN H27 H27 H 0 1 N N N -20.684 24.922 -92.176 -6.803 -4.501 0.990 H27 SKN 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SKN C33 C32 SING N N 1 SKN C10 C11 DOUB Y N 2 SKN C10 C9 SING Y N 3 SKN C11 C12 SING Y N 4 SKN C32 C9 SING N N 5 SKN C9 C8 DOUB Y N 6 SKN C12 C7 DOUB Y N 7 SKN C8 C7 SING Y N 8 SKN C7 C5 SING N N 9 SKN C30 C29 DOUB Y N 10 SKN C30 N31 SING Y N 11 SKN C29 N28 SING Y N 12 SKN N31 C19 DOUB Y N 13 SKN N28 C27 DOUB Y N 14 SKN C5 C1 SING N N 15 SKN C19 C27 SING Y N 16 SKN C19 C18 SING N N 17 SKN C18 O26 DOUB N N 18 SKN C18 N16 SING N N 19 SKN C1 N6 SING N N 20 SKN C1 B2 SING N N 21 SKN N6 C13 SING N N 22 SKN N16 C14 SING N N 23 SKN C13 C14 SING N N 24 SKN C13 O15 DOUB N N 25 SKN C14 C17 SING N N 26 SKN B2 O3 SING N N 27 SKN B2 O4 SING N N 28 SKN C17 C20 SING N N 29 SKN C21 C20 DOUB Y N 30 SKN C21 C22 SING Y N 31 SKN C20 C25 SING Y N 32 SKN C22 C23 DOUB Y N 33 SKN C25 C24 DOUB Y N 34 SKN C23 C24 SING Y N 35 SKN C1 H1 SING N N 36 SKN O4 H2 SING N N 37 SKN N6 H3 SING N N 38 SKN C8 H4 SING N N 39 SKN C10 H5 SING N N 40 SKN C11 H6 SING N N 41 SKN C12 H7 SING N N 42 SKN C14 H8 SING N N 43 SKN C21 H9 SING N N 44 SKN C22 H10 SING N N 45 SKN C24 H11 SING N N 46 SKN C27 H12 SING N N 47 SKN C30 H13 SING N N 48 SKN C32 H14 SING N N 49 SKN C32 H15 SING N N 50 SKN C33 H16 SING N N 51 SKN C33 H17 SING N N 52 SKN C33 H18 SING N N 53 SKN O3 H19 SING N N 54 SKN C5 H20 SING N N 55 SKN C5 H21 SING N N 56 SKN N16 H22 SING N N 57 SKN C17 H23 SING N N 58 SKN C17 H24 SING N N 59 SKN C23 H25 SING N N 60 SKN C25 H26 SING N N 61 SKN C29 H27 SING N N 62 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SKN InChI InChI 1.03 "InChI=1S/C24H27BN4O4/c1-2-17-9-6-10-19(13-17)15-22(25(32)33)29-23(30)20(14-18-7-4-3-5-8-18)28-24(31)21-16-26-11-12-27-21/h3-13,16,20,22,32-33H,2,14-15H2,1H3,(H,28,31)(H,29,30)/t20-,22-/m0/s1" SKN InChIKey InChI 1.03 RQXXOBNVVACHIB-UNMCSNQZSA-N SKN SMILES_CANONICAL CACTVS 3.385 "CCc1cccc(C[C@H](NC(=O)[C@H](Cc2ccccc2)NC(=O)c3cnccn3)B(O)O)c1" SKN SMILES CACTVS 3.385 "CCc1cccc(C[CH](NC(=O)[CH](Cc2ccccc2)NC(=O)c3cnccn3)B(O)O)c1" SKN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B([C@H](Cc1cccc(c1)CC)NC(=O)[C@H](Cc2ccccc2)NC(=O)c3cnccn3)(O)O" SKN SMILES "OpenEye OEToolkits" 2.0.7 "B(C(Cc1cccc(c1)CC)NC(=O)C(Cc2ccccc2)NC(=O)c3cnccn3)(O)O" # _pdbx_chem_comp_identifier.comp_id SKN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(1~{R})-2-(3-ethylphenyl)-1-[[(2~{S})-3-phenyl-2-(pyrazin-2-ylcarbonylamino)propanoyl]amino]ethyl]boronic acid" # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 SKN "[(1~{R})-2-(3-ethylphenyl)-1-[[(2~{S})-3-phenyl-2-(pyrazin-2-ylcarbonylamino)propanoyl]amino]ethyl]boronic acid" PDB ? 2 SKN "[2-(3-ethylphenyl)-1-[(2S)-3-phenyl-2-[(pyrazin-2-yl)formamido]propanamido]ethyl]boronic acid" AUTHOR ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SKN "Create component" 2020-11-23 PDBE SKN "Initial release" 2021-12-01 RCSB ##