data_SLB
#

_chem_comp.id                                   SLB
_chem_comp.name                                 "N-acetyl-beta-neuraminic acid"
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C11 H19 N O9"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N-acetylneuraminic acid; sialic acid; O-sialic acid; 5-N-ACETYL-BETA-D-NEURAMINIC ACID; BETA-SIALIC ACID"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2001-04-20
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       309.270
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SLB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1FV3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  SLB  "N-acetylneuraminic acid"            PDB  ?  
2  SLB  "sialic acid"                        PDB  ?  
3  SLB  "O-sialic acid"                      PDB  ?  
4  SLB  "5-N-ACETYL-BETA-D-NEURAMINIC ACID"  PDB  ?  
5  SLB  "BETA-SIALIC ACID"                   PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SLB  C1    C1    C  0  1  N  N  N  -1.415   -7.615   1.240  -2.642   0.326  -2.184  C1    SLB   1  
SLB  C2    C2    C  0  1  N  N  S  -1.067   -8.092  -0.114  -1.824  -0.192  -1.030  C2    SLB   2  
SLB  C3    C3    C  0  1  N  N  N  -2.182   -8.825  -0.826  -2.520   0.158   0.286  C3    SLB   3  
SLB  C4    C4    C  0  1  N  N  S  -1.609   -9.506  -2.067  -1.696  -0.402   1.451  C4    SLB   4  
SLB  C5    C5    C  0  1  N  N  R  -0.446  -10.456  -1.717  -0.255   0.102   1.320  C5    SLB   5  
SLB  C6    C6    C  0  1  N  N  R   0.586   -9.652  -0.934   0.270  -0.243  -0.075  C6    SLB   6  
SLB  C7    C7    C  0  1  N  N  R   1.646  -10.569  -0.369   1.720   0.229  -0.204  C7    SLB   7  
SLB  C8    C8    C  0  1  N  N  R   2.799   -9.681   0.086   2.249  -0.124  -1.596  C8    SLB   8  
SLB  C9    C9    C  0  1  N  N  N   2.748   -9.247   1.538   3.699   0.347  -1.725  C9    SLB   9  
SLB  C10   C10   C  0  1  N  N  N  -0.144  -12.346  -3.027   0.737   0.029   3.544  C10   SLB  10  
SLB  C11   C11   C  0  1  N  N  N  -0.667  -12.723  -4.375   1.600  -0.634   4.586  C11   SLB  11  
SLB  N5    N5    N  0  1  N  N  N   0.307  -11.137  -2.796   0.583  -0.542   2.333  N5    SLB  12  
SLB  O1A   O1A   O  0  1  N  N  N  -2.463   -7.036   1.439  -2.164   1.128  -2.952  O1A   SLB  13  
SLB  O1B   O1B   O  0  1  N  N  N  -0.586   -7.784   2.116  -3.903  -0.100  -2.359  O1B   SLB  14  
SLB  O2    O2    O  0  1  N  Y  N  -0.749   -6.907  -0.831  -1.699  -1.612  -1.138  O2    SLB  15  
SLB  O4    O4    O  0  1  N  N  N  -2.727  -10.133  -2.633  -2.249   0.043   2.691  O4    SLB  16  
SLB  O6    O6    O  0  1  N  N  N   0.035   -8.939   0.151  -0.527   0.401  -1.065  O6    SLB  17  
SLB  O7    O7    O  0  1  N  N  N   1.117  -11.343   0.691   1.779   1.644  -0.018  O7    SLB  18  
SLB  O8    O8    O  0  1  N  N  N   4.064  -10.298  -0.003   2.190  -1.539  -1.782  O8    SLB  19  
SLB  O9    O9    O  0  1  N  N  N   1.868   -8.157   1.696   4.193   0.017  -3.025  O9    SLB  20  
SLB  O10   O10   O  0  1  N  N  N  -0.268  -13.103  -2.100   0.181   1.077   3.794  O10   SLB  21  
SLB  H32   H31   H  0  1  N  N  N  -2.717   -9.538  -0.157  -3.517  -0.281   0.299  H32   SLB  22  
SLB  H31   H32   H  0  1  N  N  N  -3.044   -8.160  -1.064  -2.596   1.241   0.380  H31   SLB  23  
SLB  H4    H4    H  0  1  N  N  N  -1.132   -8.803  -2.790  -1.707  -1.491   1.416  H4    SLB  24  
SLB  H5    H5    H  0  1  N  N  N  -0.967  -11.283  -1.182  -0.232   1.182   1.461  H5    SLB  25  
SLB  H6    H6    H  0  1  N  N  N   1.010   -8.923  -1.663   0.227  -1.322  -0.219  H6    SLB  26  
SLB  H7    H7    H  0  1  N  N  N   2.007  -11.296  -1.132   2.331  -0.262   0.552  H7    SLB  27  
SLB  H8    H8    H  0  1  N  N  N   2.673   -8.821  -0.612   1.638   0.367  -2.352  H8    SLB  28  
SLB  H92   H91   H  0  1  N  N  N   2.485  -10.093   2.214   3.743   1.427  -1.583  H92   SLB  29  
SLB  H91   H92   H  0  1  N  N  N   3.763   -9.021   1.939   4.310  -0.144  -0.969  H91   SLB  30  
SLB  H111  H111  H  0  0  N  N  N  -1.050  -13.751  -4.571   1.603  -0.029   5.493  H111  SLB  31  
SLB  H113  H112  H  0  0  N  N  N  -1.464  -11.995  -4.654   1.202  -1.623   4.811  H113  SLB  32  
SLB  H112  H113  H  0  0  N  N  N   0.121  -12.496  -5.129   2.618  -0.728   4.209  H112  SLB  33  
SLB  HN5   HN5   H  0  1  N  N  N   1.092  -10.792  -3.348   1.028  -1.381   2.133  HN5   SLB  34  
SLB  HO1B  HOB1  H  0  0  N  N  N  -0.809   -7.477   2.986  -4.428   0.233  -3.099  HO1B  SLB  35  
SLB  HO2   HO2   H  0  1  N  Y  N  -0.525   -7.213  -1.701  -1.256  -1.791  -1.979  HO2   SLB  36  
SLB  HO4   HO4   H  0  1  N  Y  N  -2.370  -10.556  -3.405  -3.154  -0.295   2.731  HO4   SLB  37  
SLB  HO7   HO7   H  0  1  N  Y  N   1.783  -11.919   1.046   1.226   2.040  -0.705  HO7   SLB  38  
SLB  HO8   HO8   H  0  1  N  Y  N   4.782   -9.744   0.280   2.743  -1.935  -1.094  HO8   SLB  39  
SLB  HO9   HO9   H  0  1  N  Y  N   1.836   -7.885   2.605   5.106   0.331  -3.065  HO9   SLB  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SLB  C1   C2    SING  N  N   1  
SLB  C1   O1A   DOUB  N  N   2  
SLB  C1   O1B   SING  N  N   3  
SLB  C2   C3    SING  N  N   4  
SLB  C2   O2    SING  N  N   5  
SLB  C2   O6    SING  N  N   6  
SLB  C3   C4    SING  N  N   7  
SLB  C3   H32   SING  N  N   8  
SLB  C3   H31   SING  N  N   9  
SLB  C4   C5    SING  N  N  10  
SLB  C4   O4    SING  N  N  11  
SLB  C4   H4    SING  N  N  12  
SLB  C5   C6    SING  N  N  13  
SLB  C5   N5    SING  N  N  14  
SLB  C5   H5    SING  N  N  15  
SLB  C6   C7    SING  N  N  16  
SLB  C6   O6    SING  N  N  17  
SLB  C6   H6    SING  N  N  18  
SLB  C7   C8    SING  N  N  19  
SLB  C7   O7    SING  N  N  20  
SLB  C7   H7    SING  N  N  21  
SLB  C8   C9    SING  N  N  22  
SLB  C8   O8    SING  N  N  23  
SLB  C8   H8    SING  N  N  24  
SLB  C9   O9    SING  N  N  25  
SLB  C9   H92   SING  N  N  26  
SLB  C9   H91   SING  N  N  27  
SLB  C10  C11   SING  N  N  28  
SLB  C10  N5    SING  N  N  29  
SLB  C10  O10   DOUB  N  N  30  
SLB  C11  H111  SING  N  N  31  
SLB  C11  H113  SING  N  N  32  
SLB  C11  H112  SING  N  N  33  
SLB  N5   HN5   SING  N  N  34  
SLB  O1B  HO1B  SING  N  N  35  
SLB  O2   HO2   SING  N  N  36  
SLB  O4   HO4   SING  N  N  37  
SLB  O7   HO7   SING  N  N  38  
SLB  O8   HO8   SING  N  N  39  
SLB  O9   HO9   SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SLB  SMILES            ACDLabs               10.04  "O=C(O)C1(O)OC(C(O)C(O)CO)C(NC(=O)C)C(O)C1"  
SLB  SMILES_CANONICAL  CACTVS                3.341  "CC(=O)N[C@@H]1[C@@H](O)C[C@](O)(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O"  
SLB  SMILES            CACTVS                3.341  "CC(=O)N[CH]1[CH](O)C[C](O)(O[CH]1[CH](O)[CH](O)CO)C(O)=O"  
SLB  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC(=O)N[C@@H]1[C@H](C[C@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)O)O"  
SLB  SMILES            "OpenEye OEToolkits"  1.5.0  "CC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)O)O)O"  
SLB  InChI             InChI                 1.03   "InChI=1S/C11H19NO9/c1-4(14)12-7-5(15)2-11(20,10(18)19)21-9(7)8(17)6(16)3-13/h5-9,13,15-17,20H,2-3H2,1H3,(H,12,14)(H,18,19)/t5-,6+,7+,8+,9+,11-/m0/s1"  
SLB  InChIKey          InChI                 1.03   SQVRNKJHWKZAKO-PFQGKNLYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SLB  "SYSTEMATIC NAME"                      ACDLabs               10.04  "5-(acetylamino)-3,5-dideoxy-D-glycero-beta-D-galacto-non-2-ulopyranosonic acid"  
SLB  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.5.0  "(2S,4S,5R,6R)-5-acetamido-2,4-dihydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxylic acid"  
SLB  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DNeup5Acb  
SLB  "COMMON NAME"                          GMML                  1.0    "N-acetyl-b-D-neuraminic acid"  
SLB  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    b-D-Neup5Ac  
SLB  "SNFG CARBOHYDRATE SYMBOL"             GMML                  1.0    Neu5Ac  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
SLB  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
SLB  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
SLB  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
SLB  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SLB  "Create component"          2001-04-20  RCSB  
SLB  "Modify descriptor"         2011-06-04  RCSB  
SLB  "Other modification"        2019-08-12  RCSB  
SLB  "Other modification"        2019-12-19  RCSB  
SLB  "Other modification"        2020-07-03  RCSB  
SLB  "Modify name"               2020-07-17  RCSB  
SLB  "Modify synonyms"           2020-07-17  RCSB  
SLB  "Modify atom id"            2020-07-17  RCSB  
SLB  "Modify component atom id"  2020-07-17  RCSB  
##