data_SLD
#
_chem_comp.id SLD
_chem_comp.name "(3Z)-N-[(4E)-5-(4-{(5S)-5-[(acetylamino)methyl]-2-oxo-1,3-oxazolidin-3-yl}-2-fluorophenyl)pent-4-en-1-yl]-3-(4-methyl-2,6-dioxo-1,6-dihydropyrimidin-5(2H)-ylidene)propanamide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H28 F N5 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-07-16
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 513.518
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SLD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3CXC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SLD C1 C1 C 0 1 Y N N 66.871 119.210 100.404 -4.172 0.033 -0.678 C1 SLD 1
SLD C2 C2 C 0 1 Y N N 66.243 120.489 100.872 -5.016 0.002 0.425 C2 SLD 2
SLD C3 C3 C 0 1 Y N N 68.204 118.809 100.888 -2.895 0.539 -0.559 C3 SLD 3
SLD N1 N1 N 0 1 N N N 64.939 120.822 100.321 -6.310 -0.512 0.300 N1 SLD 4
SLD C4 C4 C 0 1 Y N N 66.897 121.367 101.788 -4.577 0.481 1.654 C4 SLD 5
SLD C5 C5 C 0 1 N N N 64.545 120.338 98.972 -6.949 -0.920 -0.961 C5 SLD 6
SLD C6 C6 C 0 1 N N N 63.846 121.608 100.856 -7.168 -0.718 1.308 C6 SLD 7
SLD C7 C7 C 0 1 N N S 63.168 120.993 98.778 -8.347 -1.401 -0.524 C7 SLD 8
SLD C8 C8 C 0 1 N N N 63.121 121.752 97.466 -9.436 -0.547 -1.176 C8 SLD 9
SLD O1 O1 O 0 1 N N N 62.996 121.951 99.798 -8.346 -1.219 0.922 O1 SLD 10
SLD N2 N2 N 0 1 N N N 63.743 123.058 97.720 -10.753 -1.024 -0.746 N2 SLD 11
SLD C9 C9 C 0 1 N N N 65.066 123.363 97.586 -11.869 -0.417 -1.196 C9 SLD 12
SLD C10 C10 C 0 1 N N N 65.477 124.773 97.903 -13.224 -0.908 -0.754 C10 SLD 13
SLD O2 O2 O 0 1 N N N 65.938 122.525 97.219 -11.783 0.522 -1.958 O2 SLD 14
SLD O3 O3 O 0 1 N N N 63.774 121.884 102.007 -6.900 -0.472 2.467 O3 SLD 15
SLD C11 C11 C 0 1 Y N N 68.217 120.962 102.267 -3.299 0.989 1.781 C11 SLD 16
SLD C12 C12 C 0 1 Y N N 68.930 119.696 101.787 -2.449 1.021 0.672 C12 SLD 17
SLD F1 F1 F 0 1 N N N 68.857 121.898 103.151 -2.872 1.455 2.975 F1 SLD 18
SLD C2B C2B C 0 1 N N N 70.326 119.257 102.261 -1.081 1.564 0.803 C2B SLD 19
SLD C3B C3B C 0 1 N N N 71.152 119.956 103.056 -0.275 1.592 -0.250 C3B SLD 20
SLD C4B C4B C 0 1 N N N 72.503 119.512 103.410 1.120 2.145 -0.117 C4B SLD 21
SLD C5B C5B C 0 1 N N N 72.420 118.529 104.535 2.131 1.101 -0.595 C5B SLD 22
SLD CAS CAS C 0 1 N N N 73.671 117.845 105.129 3.548 1.663 -0.459 CAS SLD 23
SLD N5S N5S N 0 1 N N N 74.979 117.979 104.502 4.515 0.663 -0.918 N5S SLD 24
SLD C0S C0S C 0 1 N N N 75.511 116.933 103.970 5.834 0.939 -0.890 C0S SLD 25
SLD C9S C9S C 0 1 N N N 76.811 117.248 103.471 6.830 -0.089 -1.361 C9S SLD 26
SLD O2S O2S O 0 1 N N N 74.948 115.813 103.936 6.220 2.016 -0.485 O2S SLD 27
SLD C8S C8S C 0 1 N N N 77.467 116.225 102.878 8.225 0.464 -1.227 C8S SLD 28
SLD C1S C1S C 0 1 N N N 79.834 117.473 102.190 8.997 -1.693 -0.280 C1S SLD 29
SLD O1S O1S O 0 1 N N N 79.507 118.557 102.700 7.984 -2.281 -0.605 O1S SLD 30
SLD N2S N2S N 0 1 N N N 81.124 117.336 101.532 10.000 -2.329 0.363 N2S SLD 31
SLD C3S C3S C 0 1 N N N 81.533 116.131 100.924 11.116 -1.676 0.719 C3S SLD 32
SLD O3S O3S O 0 1 N N N 82.638 116.089 100.342 11.988 -2.299 1.296 O3S SLD 33
SLD N4S N4S N 0 1 N N N 80.733 115.003 100.945 11.323 -0.377 0.475 N4S SLD 34
SLD C5S C5S C 0 1 N N N 79.421 114.960 101.561 10.439 0.370 -0.140 C5S SLD 35
SLD C7S C7S C 0 1 N N N 78.611 113.619 101.509 10.710 1.830 -0.396 C7S SLD 36
SLD C6S C6S C 0 1 N N N 78.908 116.197 102.223 9.179 -0.251 -0.581 C6S SLD 37
SLD H1 H1 H 0 1 N N N 66.342 118.578 99.706 -4.515 -0.345 -1.630 H1 SLD 38
SLD H3 H3 H 0 1 N N N 68.637 117.869 100.580 -2.240 0.561 -1.418 H3 SLD 39
SLD H4 H4 H 0 1 N N N 66.437 122.289 102.112 -5.235 0.456 2.509 H4 SLD 40
SLD H5 H5 H 0 1 N N N 65.261 120.651 98.198 -7.031 -0.072 -1.641 H5 SLD 41
SLD H5A H5A H 0 1 N N N 64.523 119.241 98.890 -6.393 -1.733 -1.426 H5A SLD 42
SLD H7 H7 H 0 1 N N N 62.396 120.210 98.794 -8.485 -2.453 -0.776 H7 SLD 43
SLD H8 H8 H 0 1 N N N 63.673 121.207 96.686 -9.310 0.493 -0.876 H8 SLD 44
SLD H8A H8A H 0 1 N N N 62.086 121.867 97.110 -9.358 -0.624 -2.260 H8A SLD 45
SLD HN2 HN2 H 0 1 N N N 63.138 123.795 98.020 -10.821 -1.776 -0.137 HN2 SLD 46
SLD H10 H10 H 0 1 N N N 65.577 124.890 98.992 -13.523 -0.381 0.152 H10 SLD 47
SLD H10A H10A H 0 0 N N N 66.441 124.991 97.420 -13.953 -0.719 -1.541 H10A SLD 48
SLD H10B H10B H 0 0 N N N 64.713 125.470 97.528 -13.175 -1.978 -0.553 H10B SLD 49
SLD H2B H2B H 0 1 N N N 70.676 118.293 101.921 -0.737 1.937 1.756 H2B SLD 50
SLD H3B H3B H 0 1 N N N 70.802 120.896 103.456 -0.619 1.219 -1.204 H3B SLD 51
SLD H4B H4B H 0 1 N N N 72.974 119.035 102.538 1.214 3.046 -0.723 H4B SLD 52
SLD H4BA H4BA H 0 0 N N N 73.106 120.378 103.720 1.316 2.389 0.928 H4BA SLD 53
SLD H5B H5B H 0 1 N N N 71.964 119.080 105.371 2.037 0.200 0.011 H5B SLD 54
SLD H5BA H5BA H 0 0 N N N 71.888 117.685 104.072 1.935 0.858 -1.640 H5BA SLD 55
SLD HAS HAS H 0 1 N N N 73.783 118.259 106.142 3.641 2.564 -1.066 HAS SLD 56
SLD HASA HASA H 0 0 N N N 73.448 116.775 105.005 3.743 1.906 0.585 HASA SLD 57
SLD HN5S HN5S H 0 0 N N N 75.452 118.860 104.485 4.207 -0.198 -1.241 HN5S SLD 58
SLD H9S H9S H 0 1 N N N 76.695 118.046 102.723 6.736 -0.990 -0.754 H9S SLD 59
SLD H9SA H9SA H 0 0 N N N 77.414 117.534 104.345 6.634 -0.333 -2.405 H9SA SLD 60
SLD H8S H8S H 0 1 N N N 76.929 115.289 102.847 8.465 1.430 -1.646 H8S SLD 61
SLD HN2S HN2S H 0 0 N N N 81.741 118.122 101.510 9.912 -3.273 0.570 HN2S SLD 62
SLD H7S H7S H 0 1 N N N 78.421 113.345 100.461 11.691 2.092 -0.000 H7S SLD 63
SLD H7SA H7SA H 0 0 N N N 79.191 112.822 101.997 10.688 2.020 -1.469 H7SA SLD 64
SLD H7SB H7SB H 0 0 N N N 77.653 113.749 102.033 9.946 2.432 0.096 H7SB SLD 65
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SLD C1 C2 DOUB Y N 1
SLD C1 C3 SING Y N 2
SLD C2 N1 SING N N 3
SLD C2 C4 SING Y N 4
SLD C3 C12 DOUB Y N 5
SLD N1 C5 SING N N 6
SLD N1 C6 SING N N 7
SLD C4 C11 DOUB Y N 8
SLD C5 C7 SING N N 9
SLD C6 O1 SING N N 10
SLD C6 O3 DOUB N N 11
SLD C7 C8 SING N N 12
SLD C7 O1 SING N N 13
SLD C8 N2 SING N N 14
SLD N2 C9 SING N N 15
SLD C9 C10 SING N N 16
SLD C9 O2 DOUB N N 17
SLD C11 C12 SING Y N 18
SLD C11 F1 SING N N 19
SLD C12 C2B SING N N 20
SLD C2B C3B DOUB N N 21
SLD C3B C4B SING N N 22
SLD C4B C5B SING N N 23
SLD C5B CAS SING N N 24
SLD CAS N5S SING N N 25
SLD N5S C0S SING N N 26
SLD C0S C9S SING N N 27
SLD C0S O2S DOUB N N 28
SLD C9S C8S SING N N 29
SLD C8S C6S DOUB N N 30
SLD C1S O1S DOUB N N 31
SLD C1S N2S SING N N 32
SLD C1S C6S SING N E 33
SLD N2S C3S SING N N 34
SLD C3S O3S DOUB N N 35
SLD C3S N4S SING N N 36
SLD N4S C5S DOUB N N 37
SLD C5S C7S SING N N 38
SLD C5S C6S SING N N 39
SLD C1 H1 SING N N 40
SLD C3 H3 SING N N 41
SLD C4 H4 SING N N 42
SLD C5 H5 SING N N 43
SLD C5 H5A SING N N 44
SLD C7 H7 SING N N 45
SLD C8 H8 SING N N 46
SLD C8 H8A SING N N 47
SLD N2 HN2 SING N N 48
SLD C10 H10 SING N N 49
SLD C10 H10A SING N N 50
SLD C10 H10B SING N N 51
SLD C2B H2B SING N N 52
SLD C3B H3B SING N Z 53
SLD C4B H4B SING N N 54
SLD C4B H4BA SING N N 55
SLD C5B H5B SING N N 56
SLD C5B H5BA SING N N 57
SLD CAS HAS SING N N 58
SLD CAS HASA SING N N 59
SLD N5S HN5S SING N N 60
SLD C9S H9S SING N N 61
SLD C9S H9SA SING N N 62
SLD C8S H8S SING N N 63
SLD N2S HN2S SING N N 64
SLD C7S H7S SING N N 65
SLD C7S H7SA SING N N 66
SLD C7S H7SB SING N N 67
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SLD SMILES ACDLabs 10.04 "O=C(NCC3OC(=O)N(c2ccc(/C=C/CCCNC(=O)C/C=C1/C(=NC(=O)NC1=O)C)c(F)c2)C3)C"
SLD SMILES_CANONICAL CACTVS 3.341 "CC(=O)NC[C@H]1CN(C(=O)O1)c2ccc(\C=C\CCCNC(=O)C\C=C/3C(=NC(=O)NC/3=O)C)c(F)c2"
SLD SMILES CACTVS 3.341 "CC(=O)NC[CH]1CN(C(=O)O1)c2ccc(C=CCCCNC(=O)CC=C3C(=NC(=O)NC3=O)C)c(F)c2"
SLD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC\1=NC(=O)NC(=O)/C1=C\CC(=O)NCCC\C=C\c2ccc(cc2F)N3C[C@@H](OC3=O)CNC(=O)C"
SLD SMILES "OpenEye OEToolkits" 1.5.0 "CC1=NC(=O)NC(=O)C1=CCC(=O)NCCCC=Cc2ccc(cc2F)N3CC(OC3=O)CNC(=O)C"
SLD InChI InChI 1.03
"InChI=1S/C25H28FN5O6/c1-15-20(23(34)30-24(35)29-15)9-10-22(33)27-11-5-3-4-6-17-7-8-18(12-21(17)26)31-14-19(37-25(31)36)13-28-16(2)32/h4,6-9,12,19H,3,5,10-11,13-14H2,1-2H3,(H,27,33)(H,28,32)(H,30,34,35)/b6-4+,20-9-/t19-/m0/s1"
SLD InChIKey InChI 1.03 UDBPSKMSYCUBIU-MTQXBESRSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SLD "SYSTEMATIC NAME" ACDLabs 10.04 "(3Z)-N-[(4E)-5-(4-{(5S)-5-[(acetylamino)methyl]-2-oxo-1,3-oxazolidin-3-yl}-2-fluorophenyl)pent-4-en-1-yl]-3-(4-methyl-2,6-dioxo-1,6-dihydropyrimidin-5(2H)-ylidene)propanamide"
SLD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(3Z)-N-[(E)-5-[4-[(5S)-5-(acetamidomethyl)-2-oxo-1,3-oxazolidin-3-yl]-2-fluoro-phenyl]pent-4-enyl]-3-(4-methyl-2,6-dioxo-pyrimidin-5-ylidene)propanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SLD "Create component" 2008-07-16 RCSB
SLD "Modify aromatic_flag" 2011-06-04 RCSB
SLD "Modify descriptor" 2011-06-04 RCSB
#