data_SLN # _chem_comp.id SLN _chem_comp.name "1-(4-AZIDO-2-NITROPHENYL)AMINO-3-(1-OXYL-2,2,5,5-TETRAMETHYLPYRROLIDINYL-3-CARBAMIDO)-2-PROPYLDISPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H29 N7 O11 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(SL-NANDP)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-04-22 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 581.411 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SLN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1SYP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SLN O1B O1B O 0 1 N N N 41.633 41.736 56.274 -0.173 5.579 -1.109 O1B SLN 1 SLN PB PB P 0 1 N N N 40.373 42.103 56.958 -0.400 4.233 -0.255 PB SLN 2 SLN O2B O2B O 0 1 N N N 39.290 42.672 56.091 -1.895 4.221 0.342 O2B SLN 3 SLN O3B O3B O 0 1 N N N 39.874 41.029 57.830 0.576 4.185 0.857 O3B SLN 4 SLN O3A O3A O 0 1 N N N 40.822 43.143 58.024 -0.192 2.952 -1.207 O3A SLN 5 SLN PA PA P 0 1 N N R 40.735 44.663 57.716 -0.034 1.674 -0.241 PA SLN 6 SLN O1A O1A O 0 1 N N N 41.483 45.000 56.493 1.429 1.689 0.433 O1A SLN 7 SLN O2A O2A O 0 1 N N N 39.314 45.063 57.775 -1.065 1.727 0.819 O2A SLN 8 SLN O2 O2 O 0 1 N N N 41.517 45.323 58.976 -0.215 0.325 -1.101 O2 SLN 9 SLN "C2'" "C2'" C 0 1 N N S 40.980 45.401 60.310 -0.183 -0.762 -0.174 "C2'" SLN 10 SLN C1A C1A C 0 1 N N N 39.620 46.161 60.313 0.978 -1.696 -0.524 C1A SLN 11 SLN NB NB N 0 1 N N N 39.329 46.892 61.584 2.247 -0.988 -0.336 NB SLN 12 SLN C1B C1B C 0 1 N N N 39.569 48.351 61.503 3.412 -1.618 -0.586 C1B SLN 13 SLN OC OC O 0 1 N N N 39.773 48.877 60.414 3.410 -2.769 -0.966 OC SLN 14 SLN CA CA C 0 1 N N R 39.419 49.250 62.739 4.718 -0.890 -0.393 CA SLN 15 SLN CB CB C 0 1 N N N 38.295 50.285 62.526 5.761 -1.376 -1.425 CB SLN 16 SLN CC CC C 0 1 N N N 39.027 51.570 62.110 7.071 -1.419 -0.600 CC SLN 17 SLN CC1 CC1 C 0 1 N N N 38.490 52.725 62.959 8.067 -2.402 -1.219 CC1 SLN 18 SLN CC2 CC2 C 0 1 N N N 38.779 51.945 60.646 7.689 -0.023 -0.494 CC2 SLN 19 SLN ND ND N 0 1 N N N 40.483 51.353 62.315 6.623 -1.896 0.733 ND SLN 20 SLN OR OR O 0 1 N N N 41.281 52.372 62.534 7.564 -1.362 1.717 OR SLN 21 SLN CE CE C 0 1 N N N 40.650 50.109 63.098 5.324 -1.231 0.981 CE SLN 22 SLN CE1 CE1 C 0 1 N N N 40.616 50.388 64.618 5.545 0.052 1.786 CE1 SLN 23 SLN CE2 CE2 C 0 1 N N N 41.998 49.424 62.803 4.388 -2.170 1.745 CE2 SLN 24 SLN "C1'" "C1'" C 0 1 N N N 42.034 46.174 61.099 -1.500 -1.536 -0.250 "C1'" SLN 25 SLN N1 N1 N 0 1 N N N 43.340 45.467 61.045 -2.612 -0.643 0.085 N1 SLN 26 SLN CB1 CB1 C 0 1 Y N N 44.380 46.445 61.190 -3.892 -1.115 0.083 CB1 SLN 27 SLN CB2 CB2 C 0 1 Y N N 45.127 46.984 60.121 -4.957 -0.212 0.260 CB2 SLN 28 SLN NN1 NN1 N 1 1 N N N 45.143 46.406 58.872 -4.671 1.230 0.437 NN1 SLN 29 SLN ON1 ON1 O -1 1 N N N 44.616 45.311 58.706 -5.382 1.942 1.286 ON1 SLN 30 SLN ON2 ON2 O 0 1 N N N 45.971 46.783 58.024 -3.705 1.799 -0.253 ON2 SLN 31 SLN CB3 CB3 C 0 1 Y N N 45.892 48.142 60.362 -6.238 -0.642 0.258 CB3 SLN 32 SLN CB4 CB4 C 0 1 Y N N 46.028 48.679 61.634 -6.511 -2.083 0.080 CB4 SLN 33 SLN NA1 NA1 N 0 1 N N N 46.901 49.813 61.826 -7.736 -2.535 0.078 NA1 SLN 34 SLN NA2 NA2 N 1 1 N N N 46.188 50.927 62.425 -7.929 -3.634 -0.059 NA2 SLN 35 SLN NA3 NA3 N -1 1 N N N 45.494 51.890 63.109 -8.122 -4.733 -0.195 NA3 SLN 36 SLN CB5 CB5 C 0 1 Y N N 45.382 48.047 62.732 -5.366 -3.000 -0.096 CB5 SLN 37 SLN CB6 CB6 C 0 1 Y N N 44.536 46.946 62.464 -4.113 -2.496 -0.089 CB6 SLN 38 SLN H1B H1B H 0 1 N N N 42.319 41.376 56.823 -0.307 6.321 -0.502 H1B SLN 39 SLN H2B H2B H 0 1 N N N 38.481 42.908 56.530 -2.498 4.254 -0.413 H2B SLN 40 SLN H1A H1A H 0 1 N N N 41.430 45.930 56.305 2.070 1.653 -0.291 H1A SLN 41 SLN H21 H21 H 0 1 N N N 40.864 44.384 60.741 -0.046 -0.376 0.836 H21 SLN 42 SLN H1AA H1AA H 0 0 N N N 38.851 45.388 60.212 0.889 -2.012 -1.564 H1AA SLN 43 SLN H2AA H2AA H 0 0 N N N 39.596 46.802 59.404 0.949 -2.570 0.126 H2AA SLN 44 SLN HNB HNB H 0 1 N N N 38.334 46.798 61.751 2.248 -0.067 -0.032 HNB SLN 45 SLN HCA HCA H 0 1 N N N 39.167 48.611 63.577 4.568 0.186 -0.484 HCA SLN 46 SLN HCB1 HCB1 H 0 0 N N N 37.589 49.971 61.756 5.847 -0.667 -2.249 HCB1 SLN 47 SLN HCB2 HCB2 H 0 0 N N N 37.763 50.436 63.470 5.505 -2.369 -1.795 HCB2 SLN 48 SLN H1CC H1CC H 0 0 N N N 38.675 52.547 64.017 8.964 -2.447 -0.602 H1CC SLN 49 SLN H2CC H2CC H 0 0 N N N 39.008 53.638 62.682 7.614 -3.391 -1.275 H2CC SLN 50 SLN H3CC H3CC H 0 0 N N N 37.416 52.839 62.803 8.333 -2.067 -2.222 H3CC SLN 51 SLN H4CC H4CC H 0 0 N N N 37.733 52.208 60.482 8.119 0.258 -1.455 H4CC SLN 52 SLN H5CC H5CC H 0 0 N N N 39.045 51.128 59.982 6.917 0.696 -0.217 H5CC SLN 53 SLN H6CC H6CC H 0 0 N N N 39.423 52.786 60.396 8.470 -0.028 0.266 H6CC SLN 54 SLN HOR HOR H 0 1 N N N 41.819 52.238 63.333 8.413 -1.795 1.556 HOR SLN 55 SLN H1CE H1CE H 0 0 N N N 40.813 49.467 65.172 4.584 0.521 1.994 H1CE SLN 56 SLN H2CE H2CE H 0 0 N N N 39.646 50.771 64.931 6.042 -0.190 2.725 H2CE SLN 57 SLN H3CE H3CE H 0 0 N N N 41.372 51.124 64.876 6.168 0.738 1.212 H3CE SLN 58 SLN H4CE H4CE H 0 0 N N N 42.124 49.275 61.733 4.314 -3.119 1.215 H4CE SLN 59 SLN H5CE H5CE H 0 0 N N N 42.044 48.460 63.313 4.783 -2.342 2.746 H5CE SLN 60 SLN H6CE H6CE H 0 0 N N N 42.817 50.051 63.158 3.399 -1.717 1.818 H6CE SLN 61 SLN H11 H11 H 0 1 N N N 42.121 47.174 60.655 -1.637 -1.923 -1.260 H11 SLN 62 SLN H12 H12 H 0 1 N N N 41.703 46.268 62.134 -1.476 -2.366 0.456 H12 SLN 63 SLN HN1 HN1 H 0 1 N N N 43.472 45.100 60.089 -2.438 0.285 0.308 HN1 SLN 64 SLN HB3 HB3 H 0 1 N N N 46.394 48.668 59.568 -7.051 0.057 0.389 HB3 SLN 65 SLN HB5 HB5 H 0 1 N N N 45.461 48.436 63.722 -5.529 -4.060 -0.229 HB5 SLN 66 SLN HB6 HB6 H 0 1 N N N 43.959 46.525 63.285 -3.271 -3.159 -0.217 HB6 SLN 67 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SLN O1B PB SING N N 1 SLN O1B H1B SING N N 2 SLN PB O2B SING N N 3 SLN PB O3B DOUB N N 4 SLN PB O3A SING N N 5 SLN O2B H2B SING N N 6 SLN O3A PA SING N N 7 SLN PA O1A SING N N 8 SLN PA O2A DOUB N N 9 SLN PA O2 SING N N 10 SLN O1A H1A SING N N 11 SLN O2 "C2'" SING N N 12 SLN "C2'" C1A SING N N 13 SLN "C2'" "C1'" SING N N 14 SLN "C2'" H21 SING N N 15 SLN C1A NB SING N N 16 SLN C1A H1AA SING N N 17 SLN C1A H2AA SING N N 18 SLN NB C1B SING N N 19 SLN NB HNB SING N N 20 SLN C1B OC DOUB N N 21 SLN C1B CA SING N N 22 SLN CA CB SING N N 23 SLN CA CE SING N N 24 SLN CA HCA SING N N 25 SLN CB CC SING N N 26 SLN CB HCB1 SING N N 27 SLN CB HCB2 SING N N 28 SLN CC CC1 SING N N 29 SLN CC CC2 SING N N 30 SLN CC ND SING N N 31 SLN CC1 H1CC SING N N 32 SLN CC1 H2CC SING N N 33 SLN CC1 H3CC SING N N 34 SLN CC2 H4CC SING N N 35 SLN CC2 H5CC SING N N 36 SLN CC2 H6CC SING N N 37 SLN ND OR SING N N 38 SLN ND CE SING N N 39 SLN OR HOR SING N N 40 SLN CE CE1 SING N N 41 SLN CE CE2 SING N N 42 SLN CE1 H1CE SING N N 43 SLN CE1 H2CE SING N N 44 SLN CE1 H3CE SING N N 45 SLN CE2 H4CE SING N N 46 SLN CE2 H5CE SING N N 47 SLN CE2 H6CE SING N N 48 SLN "C1'" N1 SING N N 49 SLN "C1'" H11 SING N N 50 SLN "C1'" H12 SING N N 51 SLN N1 CB1 SING N N 52 SLN N1 HN1 SING N N 53 SLN CB1 CB2 DOUB Y N 54 SLN CB1 CB6 SING Y N 55 SLN CB2 NN1 SING N N 56 SLN CB2 CB3 SING Y N 57 SLN NN1 ON1 SING N N 58 SLN NN1 ON2 DOUB N N 59 SLN CB3 CB4 DOUB Y N 60 SLN CB3 HB3 SING N N 61 SLN CB4 NA1 SING N N 62 SLN CB4 CB5 SING Y N 63 SLN NA1 NA2 DOUB N N 64 SLN NA2 NA3 DOUB N N 65 SLN CB5 CB6 DOUB Y N 66 SLN CB5 HB5 SING N N 67 SLN CB6 HB6 SING N N 68 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SLN SMILES ACDLabs 10.04 "[O-][N+](=O)c1cc(/N=[N+]=[N-])ccc1NCC(OP(=O)(O)OP(=O)(O)O)CNC(=O)C2C(N(O)C(C)(C)C2)(C)C" SLN SMILES_CANONICAL CACTVS 3.341 "CC1(C)C[C@@H](C(=O)NC[C@H](CNc2ccc(cc2[N+]([O-])=O)N=[N+]=[N-])O[P@](O)(=O)O[P](O)(O)=O)C(C)(C)N1O" SLN SMILES CACTVS 3.341 "CC1(C)C[CH](C(=O)NC[CH](CNc2ccc(cc2[N+]([O-])=O)N=[N+]=[N-])O[P](O)(=O)O[P](O)(O)=O)C(C)(C)N1O" SLN SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1(C[C@H](C([N@@]1O)(C)C)C(=O)NC[C@H](CNc2ccc(cc2[N+](=O)[O-])N=[N+]=[N-])O[P@@](=O)(O)OP(=O)(O)O)C" SLN SMILES "OpenEye OEToolkits" 1.5.0 "CC1(CC(C(N1O)(C)C)C(=O)NCC(CNc2ccc(cc2[N+](=O)[O-])N=[N+]=[N-])OP(=O)(O)OP(=O)(O)O)C" SLN InChI InChI 1.03 "InChI=1S/C18H29N7O11P2/c1-17(2)8-13(18(3,4)25(17)29)16(26)21-10-12(35-38(33,34)36-37(30,31)32)9-20-14-6-5-11(22-23-19)7-15(14)24(27)28/h5-7,12-13,20,29H,8-10H2,1-4H3,(H,21,26)(H,33,34)(H2,30,31,32)/t12-,13-/m0/s1" SLN InChIKey InChI 1.03 HZRFLJTVCVQAIS-STQMWFEESA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SLN "SYSTEMATIC NAME" ACDLabs 10.04 "(1S)-2-[(4-azido-2-nitrophenyl)amino]-1-[({[(3R)-1-hydroxy-2,2,5,5-tetramethylpyrrolidin-3-yl]carbonyl}amino)methyl]ethyl trihydrogen diphosphate" SLN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S)-1-[(4-azido-2-nitro-phenyl)amino]-3-[[(1R,3R)-1-hydroxy-2,2,5,5-tetramethyl-pyrrolidin-3-yl]carbonylamino]propan-2-yl] phosphono hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SLN "Create component" 2003-04-22 RCSB SLN "Modify descriptor" 2011-06-04 RCSB SLN "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id SLN _pdbx_chem_comp_synonyms.name "(SL-NANDP)" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##