data_SO8 # _chem_comp.id SO8 _chem_comp.name "2'-(L-ISOLEUCYL)AMINO-2'-DEOXYADENOSINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H25 N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-11-24 _chem_comp.pdbx_modified_date 2016-07-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 379.414 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SO8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5FOL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SO8 C C C 0 1 N N N 16.991 3.593 19.844 1.887 0.462 1.027 C SO8 1 SO8 N N N 0 1 N N N 17.935 1.747 21.018 3.237 2.272 1.926 N SO8 2 SO8 O O O 0 1 N N N 17.853 4.170 19.206 1.902 -0.017 2.141 O SO8 3 SO8 N1 N1 N 0 1 Y N N 13.509 -1.404 14.308 -3.049 3.509 -0.685 N1 SO8 4 SO8 C2 C2 C 0 1 Y N N 13.142 -1.366 15.729 -1.917 3.089 -1.219 C2 SO8 5 SO8 N3 N3 N 0 1 Y N N 13.455 -0.127 16.433 -1.510 1.841 -1.120 N3 SO8 6 SO8 C4 C4 C 0 1 Y N N 14.086 0.915 15.826 -2.238 0.940 -0.468 C4 SO8 7 SO8 C5 C5 C 0 1 Y N N 14.447 0.844 14.401 -3.452 1.338 0.118 C5 SO8 8 SO8 C6 C6 C 0 1 Y N N 14.121 -0.387 13.662 -3.843 2.681 -0.013 C6 SO8 9 SO8 N6 N6 N 0 1 N N N 14.444 -0.467 12.362 -5.028 3.132 0.543 N6 SO8 10 SO8 N7 N7 N 0 1 Y N N 15.025 1.998 14.072 -3.987 0.244 0.711 N7 SO8 11 SO8 C8 C8 C 0 1 Y N N 15.044 2.746 15.192 -3.198 -0.775 0.531 C8 SO8 12 SO8 N9 N9 N 0 1 Y N N 14.490 2.095 16.246 -2.105 -0.397 -0.191 N9 SO8 13 SO8 CA CA C 0 1 N N S 17.273 3.024 21.226 2.800 1.611 0.688 CA SO8 14 SO8 CB CB C 0 1 N N S 18.109 3.826 22.237 4.023 1.086 -0.067 CB SO8 15 SO8 NAI NAI N 0 1 N N N 15.739 3.401 19.392 1.058 -0.039 0.090 NAI SO8 16 SO8 CAJ CAJ C 0 1 N N R 15.255 3.748 18.069 0.174 -1.160 0.418 CAJ SO8 17 SO8 CAK CAK C 0 1 N N S 14.401 4.991 18.030 0.899 -2.513 0.212 CAK SO8 18 SO8 OAL OAL O 0 1 N N N 14.700 6.016 18.988 2.019 -2.352 -0.661 OAL SO8 19 SO8 CAM CAM C 0 1 N N R 12.981 4.442 18.172 -0.167 -3.417 -0.438 CAM SO8 20 SO8 CAN CAN C 0 1 N N N 12.071 5.265 17.273 -0.400 -4.654 0.432 CAN SO8 21 SO8 OAO OAO O 0 1 N N N 10.790 5.265 17.868 -1.301 -5.541 -0.234 OAO SO8 22 SO8 OAP OAP O 0 1 N N N 12.988 3.062 17.736 -1.378 -2.650 -0.533 OAP SO8 23 SO8 CAQ CAQ C 0 1 N N R 14.311 2.579 17.649 -0.993 -1.260 -0.597 CAQ SO8 24 SO8 CD1 CD1 C 0 1 N N N 17.584 5.138 24.374 6.230 1.716 -1.055 CD1 SO8 25 SO8 CG1 CG1 C 0 1 N N N 17.261 4.906 22.917 4.950 2.253 -0.411 CG1 SO8 26 SO8 CG2 CG2 C 0 1 N N N 19.390 4.416 21.628 3.569 0.399 -1.357 CG2 SO8 27 SO8 HN HN H 0 1 N N N 18.143 1.331 21.903 2.454 2.683 2.411 HN SO8 28 SO8 HNA HNA H 0 1 N N N 17.334 1.141 20.497 3.734 1.628 2.523 HNA SO8 29 SO8 H2 H2 H 0 1 N N N 12.670 -2.203 16.222 -1.302 3.795 -1.756 H2 SO8 30 SO8 HN6 HN6 H 0 1 N N N 14.163 -1.357 12.002 -5.287 4.061 0.445 HN6 SO8 31 SO8 HN6A HN6A H 0 0 N N N 13.977 0.259 11.857 -5.599 2.517 1.031 HN6A SO8 32 SO8 H8 H8 H 0 1 N N N 15.452 3.745 15.245 -3.382 -1.774 0.899 H8 SO8 33 SO8 HA HA H 0 1 N N N 16.300 2.828 21.700 2.267 2.327 0.063 HA SO8 34 SO8 HB HB H 0 1 N N N 18.423 3.122 23.022 4.556 0.370 0.558 HB SO8 35 SO8 HNAI HNAI H 0 0 N N N 15.085 2.983 20.022 1.045 0.344 -0.801 HNAI SO8 36 SO8 HAJ HAJ H 0 1 N N N 16.084 3.831 17.351 -0.203 -1.072 1.437 HAJ SO8 37 SO8 HAK HAK H 0 1 N N N 14.486 5.421 17.021 1.218 -2.924 1.170 HAK SO8 38 SO8 HOAL HOAL H 0 0 N N N 14.102 6.745 18.870 2.510 -3.169 -0.825 HOAL SO8 39 SO8 HAM HAM H 0 1 N N N 12.651 4.524 19.218 0.162 -3.720 -1.433 HAM SO8 40 SO8 HAN HAN H 0 1 N N N 12.450 6.295 17.193 0.549 -5.161 0.604 HAN SO8 41 SO8 HANA HANA H 0 0 N N N 12.022 4.814 16.271 -0.829 -4.350 1.387 HANA SO8 42 SO8 HOAO HOAO H 0 0 N N N 10.191 5.772 17.332 -1.496 -6.348 0.261 HOAO SO8 43 SO8 HAQ HAQ H 0 1 N N N 14.462 1.741 18.345 -0.653 -0.999 -1.600 HAQ SO8 44 SO8 HD1 HD1 H 0 1 N N N 16.929 5.926 24.774 6.890 2.547 -1.300 HD1 SO8 45 SO8 HD1A HD1A H 0 0 N N N 17.425 4.207 24.938 6.733 1.045 -0.359 HD1A SO8 46 SO8 HD1B HD1B H 0 0 N N N 18.634 5.450 24.471 5.977 1.172 -1.966 HD1B SO8 47 SO8 HG1 HG1 H 0 1 N N N 17.414 5.852 22.377 4.447 2.924 -1.107 HG1 SO8 48 SO8 HG1A HG1A H 0 0 N N N 16.204 4.609 22.843 5.203 2.797 0.499 HG1A SO8 49 SO8 HG2 HG2 H 0 1 N N N 19.940 4.975 22.400 4.440 0.024 -1.895 HG2 SO8 50 SO8 HG2A HG2A H 0 0 N N N 20.022 3.602 21.245 2.908 -0.433 -1.112 HG2A SO8 51 SO8 HG2B HG2B H 0 0 N N N 19.125 5.094 20.803 3.035 1.115 -1.982 HG2B SO8 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SO8 C O DOUB N N 1 SO8 C CA SING N N 2 SO8 C NAI SING N N 3 SO8 N CA SING N N 4 SO8 N1 C2 DOUB Y N 5 SO8 N1 C6 SING Y N 6 SO8 C2 N3 SING Y N 7 SO8 N3 C4 DOUB Y N 8 SO8 C4 C5 SING Y N 9 SO8 C4 N9 SING Y N 10 SO8 C5 C6 DOUB Y N 11 SO8 C5 N7 SING Y N 12 SO8 C6 N6 SING N N 13 SO8 N7 C8 DOUB Y N 14 SO8 C8 N9 SING Y N 15 SO8 N9 CAQ SING N N 16 SO8 CA CB SING N N 17 SO8 CB CG1 SING N N 18 SO8 CB CG2 SING N N 19 SO8 NAI CAJ SING N N 20 SO8 CAJ CAK SING N N 21 SO8 CAJ CAQ SING N N 22 SO8 CAK OAL SING N N 23 SO8 CAK CAM SING N N 24 SO8 CAM CAN SING N N 25 SO8 CAM OAP SING N N 26 SO8 CAN OAO SING N N 27 SO8 OAP CAQ SING N N 28 SO8 CD1 CG1 SING N N 29 SO8 N HN SING N N 30 SO8 N HNA SING N N 31 SO8 C2 H2 SING N N 32 SO8 N6 HN6 SING N N 33 SO8 N6 HN6A SING N N 34 SO8 C8 H8 SING N N 35 SO8 CA HA SING N N 36 SO8 CB HB SING N N 37 SO8 NAI HNAI SING N N 38 SO8 CAJ HAJ SING N N 39 SO8 CAK HAK SING N N 40 SO8 OAL HOAL SING N N 41 SO8 CAM HAM SING N N 42 SO8 CAN HAN SING N N 43 SO8 CAN HANA SING N N 44 SO8 OAO HOAO SING N N 45 SO8 CAQ HAQ SING N N 46 SO8 CD1 HD1 SING N N 47 SO8 CD1 HD1A SING N N 48 SO8 CD1 HD1B SING N N 49 SO8 CG1 HG1 SING N N 50 SO8 CG1 HG1A SING N N 51 SO8 CG2 HG2 SING N N 52 SO8 CG2 HG2A SING N N 53 SO8 CG2 HG2B SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SO8 InChI InChI 1.03 "InChI=1S/C16H25N7O4/c1-3-7(2)9(17)15(26)22-10-12(25)8(4-24)27-16(10)23-6-21-11-13(18)19-5-20-14(11)23/h5-10,12,16,24-25H,3-4,17H2,1-2H3,(H,22,26)(H2,18,19,20)/t7-,8+,9-,10+,12+,16+/m0/s1" SO8 InChIKey InChI 1.03 GWYBWPBDPROZEC-DTKXOMKJSA-N SO8 SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C)[C@H](N)C(=O)N[C@@H]1[C@H](O)[C@@H](CO)O[C@H]1n2cnc3c(N)ncnc23" SO8 SMILES CACTVS 3.385 "CC[CH](C)[CH](N)C(=O)N[CH]1[CH](O)[CH](CO)O[CH]1n2cnc3c(N)ncnc23" SO8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC[C@H](C)[C@@H](C(=O)N[C@@H]1[C@@H]([C@H](O[C@H]1n2cnc3c2ncnc3N)CO)O)N" SO8 SMILES "OpenEye OEToolkits" 1.7.6 "CCC(C)C(C(=O)NC1C(C(OC1n2cnc3c2ncnc3N)CO)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SO8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3S)-N-[(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl]-2-azanyl-3-methyl-pentanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SO8 "Create component" 2015-11-24 EBI SO8 "Initial release" 2016-08-03 RCSB #