data_SP1
#

_chem_comp.id                                   SP1
_chem_comp.name                                 "6-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H12 N5 O5 P S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "SP-ADENOSINE-3',5'-CYCLIC-MONOPHOSPHOROTHIOATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2002-12-13
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       345.272
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SP1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1NE6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SP1  P       P     P  0  1  N  N  S  39.403  47.444  83.986  -3.739   0.195   0.406  P       SP1   1  
SP1  S1P     S1P   S  0  1  N  N  N  39.316  45.780  83.197  -3.274   1.917   0.946  S1P     SP1   2  
SP1  O2P     O2P   O  0  1  N  N  N  38.765  48.594  83.302  -5.153  -0.202   1.067  O2P     SP1   3  
SP1  "O5'"   O5*   O  0  1  N  N  N  38.751  47.291  85.440  -3.877   0.163  -1.194  "O5'"   SP1   4  
SP1  "C5'"   C5*   C  0  1  N  N  N  39.469  46.643  86.502  -2.587   0.418  -1.768  "C5'"   SP1   5  
SP1  "C4'"   C4*   C  0  1  N  N  R  40.855  47.215  86.562  -1.638  -0.652  -1.266  "C4'"   SP1   6  
SP1  "O4'"   O4*   O  0  1  N  N  N  41.694  46.587  87.556  -0.332  -0.652  -1.822  "O4'"   SP1   7  
SP1  "C3'"   C3*   C  0  1  N  N  S  41.597  46.957  85.279  -1.419  -0.414   0.251  "C3'"   SP1   8  
SP1  "O3'"   O3*   O  0  1  N  N  N  40.945  47.770  84.320  -2.608  -0.842   0.909  "O3'"   SP1   9  
SP1  "C2'"   C2*   C  0  1  N  N  R  43.037  47.233  85.695  -0.204  -1.336   0.491  "C2'"   SP1  10  
SP1  "O2'"   O2*   O  0  1  N  N  N  43.370  48.610  85.798  -0.613  -2.697   0.633  "O2'"   SP1  11  
SP1  "C1'"   C1*   C  0  1  N  N  R  43.040  46.625  87.105   0.592  -1.136  -0.825  "C1'"   SP1  12  
SP1  N9      N9    N  0  1  Y  N  N  43.601  45.276  87.231   1.659  -0.154  -0.618  N9      SP1  13  
SP1  C8      C8    C  0  1  Y  N  N  44.626  44.905  88.071   1.589   1.181  -0.881  C8      SP1  14  
SP1  N7      N7    N  0  1  Y  N  N  44.942  43.637  87.990   2.718   1.754  -0.578  N7      SP1  15  
SP1  C5      C5    C  0  1  Y  N  N  44.067  43.136  87.035   3.580   0.826  -0.097  C5      SP1  16  
SP1  C6      C6    C  0  1  Y  N  N  43.887  41.849  86.521   4.906   0.855   0.366  C6      SP1  17  
SP1  N6      N6    N  0  1  N  N  N  44.632  40.808  86.888   5.616   2.042   0.408  N6      SP1  18  
SP1  N1      N1    N  0  1  Y  N  N  42.908  41.663  85.610   5.461  -0.283   0.768  N1      SP1  19  
SP1  C2      C2    C  0  1  Y  N  N  42.163  42.720  85.251   4.792  -1.421   0.732  C2      SP1  20  
SP1  N3      N3    N  0  1  Y  N  N  42.244  43.985  85.661   3.551  -1.497   0.300  N3      SP1  21  
SP1  C4      C4    C  0  1  Y  N  N  43.231  44.129  86.562   2.913  -0.411  -0.122  C4      SP1  22  
SP1  HOP2    2HOP  H  0  0  N  N  N  38.629  49.298  83.925  -5.797   0.451   0.763  HOP2    SP1  23  
SP1  "H5'1"  1H5*  H  0  0  N  N  N  39.518  45.560  86.316  -2.232   1.401  -1.457  "H5'1"  SP1  24  
SP1  "H5'2"  2H5*  H  0  0  N  N  N  38.954  46.816  87.458  -2.651   0.375  -2.855  "H5'2"  SP1  25  
SP1  "H4'"   H4*   H  0  1  N  N  N  40.693  48.280  86.783  -2.091  -1.632  -1.413  "H4'"   SP1  26  
SP1  "H3'"   H3*   H  0  1  N  N  N  41.606  45.967  84.800  -1.194   0.627   0.481  "H3'"   SP1  27  
SP1  "H2'"   H2*   H  0  1  N  N  N  43.757  46.834  84.965   0.369  -1.009   1.359  "H2'"   SP1  28  
SP1  "HO2'"  *HO2  H  0  0  N  N  N  43.444  48.851  86.714   0.189  -3.216   0.780  "HO2'"  SP1  29  
SP1  "H1'"   H1*   H  0  1  N  N  N  43.701  47.267  87.705   1.020  -2.086  -1.147  "H1'"   SP1  30  
SP1  H8      H8    H  0  1  N  N  N  45.124  45.596  88.735   0.725   1.689  -1.282  H8      SP1  31  
SP1  HN61    1HN6  H  0  0  N  N  N  45.495  41.135  87.273   6.529   2.050   0.734  HN61    SP1  32  
SP1  HN62    2HN6  H  0  0  N  N  N  44.819  40.234  86.091   5.201   2.866   0.108  HN62    SP1  33  
SP1  H2      H2    H  0  1  N  N  N  41.388  42.516  84.527   5.282  -2.323   1.068  H2      SP1  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SP1  P      S1P     DOUB  N  N   1  
SP1  P      O2P     SING  N  N   2  
SP1  P      "O5'"   SING  N  N   3  
SP1  P      "O3'"   SING  N  N   4  
SP1  O2P    HOP2    SING  N  N   5  
SP1  "O5'"  "C5'"   SING  N  N   6  
SP1  "C5'"  "C4'"   SING  N  N   7  
SP1  "C5'"  "H5'1"  SING  N  N   8  
SP1  "C5'"  "H5'2"  SING  N  N   9  
SP1  "C4'"  "O4'"   SING  N  N  10  
SP1  "C4'"  "C3'"   SING  N  N  11  
SP1  "C4'"  "H4'"   SING  N  N  12  
SP1  "O4'"  "C1'"   SING  N  N  13  
SP1  "C3'"  "O3'"   SING  N  N  14  
SP1  "C3'"  "C2'"   SING  N  N  15  
SP1  "C3'"  "H3'"   SING  N  N  16  
SP1  "C2'"  "O2'"   SING  N  N  17  
SP1  "C2'"  "C1'"   SING  N  N  18  
SP1  "C2'"  "H2'"   SING  N  N  19  
SP1  "O2'"  "HO2'"  SING  N  N  20  
SP1  "C1'"  N9      SING  N  N  21  
SP1  "C1'"  "H1'"   SING  N  N  22  
SP1  N9     C8      SING  Y  N  23  
SP1  N9     C4      SING  Y  N  24  
SP1  C8     N7      DOUB  Y  N  25  
SP1  C8     H8      SING  N  N  26  
SP1  N7     C5      SING  Y  N  27  
SP1  C5     C6      DOUB  Y  N  28  
SP1  C5     C4      SING  Y  N  29  
SP1  C6     N6      SING  N  N  30  
SP1  C6     N1      SING  Y  N  31  
SP1  N6     HN61    SING  N  N  32  
SP1  N6     HN62    SING  N  N  33  
SP1  N1     C2      DOUB  Y  N  34  
SP1  C2     N3      SING  Y  N  35  
SP1  C2     H2      SING  N  N  36  
SP1  N3     C4      DOUB  Y  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SP1  SMILES            ACDLabs               10.04  "S=P3(OCC4OC(n1c2ncnc(N)c2nc1)C(O)C4O3)O"  
SP1  SMILES_CANONICAL  CACTVS                3.341  "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P@](O)(=S)O[C@H]4[C@H]3O"  
SP1  SMILES            CACTVS                3.341  "Nc1ncnc2n(cnc12)[CH]3O[CH]4CO[P](O)(=S)O[CH]4[CH]3O"  
SP1  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)CO[P@](=S)(O4)O)O)N"  
SP1  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=S)(O4)O)O)N"  
SP1  InChI             InChI                 1.03   "InChI=1S/C10H12N5O5PS/c11-8-5-9(13-2-12-8)15(3-14-5)10-6(16)7-4(19-10)1-18-21(17,22)20-7/h2-4,6-7,10,16H,1H2,(H,17,22)(H2,11,12,13)/t4-,6-,7-,10-,21+/m1/s1"  
SP1  InChIKey          InChI                 1.03   SMPNJFHAPJOHPP-LHKKBNDGSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SP1  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2S,4aR,6R,7R,7aS)-6-(6-amino-9H-purin-9-yl)tetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinine-2,7-diol 2-sulfide"  
SP1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(1R,4S,6S,7R,8R)-8-(6-aminopurin-9-yl)-4-hydroxy-4-sulfanylidene-3,5,9-trioxa-4$l^{5}-phosphabicyclo[4.3.0]nonan-7-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SP1  "Create component"   2002-12-13  RCSB  
SP1  "Modify descriptor"  2011-06-04  RCSB  
SP1  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     SP1
_pdbx_chem_comp_synonyms.name        "SP-ADENOSINE-3',5'-CYCLIC-MONOPHOSPHOROTHIOATE"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##