data_SPH # _chem_comp.id SPH _chem_comp.name SPHINGOSINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H37 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 299.492 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SPH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1AR7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SPH C1 C1 C 0 1 N N N 33.447 50.105 114.851 -7.253 -1.988 -0.040 C1 SPH 1 SPH O1 O1 O 0 1 N N N 34.340 50.814 113.960 -8.586 -2.330 0.345 O1 SPH 2 SPH C2 C2 C 0 1 N N R 32.528 50.980 115.685 -7.087 -0.467 -0.007 C2 SPH 3 SPH N2 N2 N 0 1 N N N 33.358 51.748 116.609 -7.227 0.011 1.375 N2 SPH 4 SPH C3 C3 C 0 1 N N S 31.683 51.811 114.648 -5.702 -0.094 -0.538 C3 SPH 5 SPH O3 O3 O 0 1 N N N 31.065 50.864 113.788 -5.565 -0.559 -1.882 O3 SPH 6 SPH C4 C4 C 0 1 N N N 30.509 52.608 115.123 -5.538 1.404 -0.505 C4 SPH 7 SPH C5 C5 C 0 1 N N N 29.302 52.755 114.510 -4.493 1.936 0.078 C5 SPH 8 SPH C6 C6 C 0 1 N N N 29.010 53.355 113.178 -3.369 1.055 0.559 C6 SPH 9 SPH C7 C7 C 0 1 N N N 29.147 54.843 113.247 -2.042 1.568 -0.004 C7 SPH 10 SPH C8 C8 C 0 1 N N N 28.968 55.455 111.870 -0.901 0.674 0.485 C8 SPH 11 SPH C9 C9 C 0 1 N N N 29.184 56.955 111.960 0.426 1.187 -0.078 C9 SPH 12 SPH C10 C10 C 0 1 N N N 28.114 57.764 111.281 1.567 0.293 0.411 C10 SPH 13 SPH C11 C11 C 0 1 N N N 28.536 59.208 111.165 2.894 0.805 -0.152 C11 SPH 14 SPH C12 C12 C 0 1 N N N 27.448 60.019 110.482 4.036 -0.089 0.337 C12 SPH 15 SPH C13 C13 C 0 1 N N N 26.348 60.531 111.393 5.363 0.424 -0.226 C13 SPH 16 SPH C14 C14 C 0 1 N N N 25.572 61.558 110.587 6.504 -0.470 0.263 C14 SPH 17 SPH C15 C15 C 0 1 N N N 24.497 62.260 111.405 7.831 0.043 -0.300 C15 SPH 18 SPH C16 C16 C 0 1 N N N 23.866 63.364 110.563 8.972 -0.852 0.189 C16 SPH 19 SPH C17 C17 C 0 1 N N N 22.886 64.234 111.350 10.299 -0.339 -0.374 C17 SPH 20 SPH C18 C18 C 0 1 N N N 22.394 65.466 110.544 11.440 -1.233 0.115 C18 SPH 21 SPH H11 1H1 H 0 1 N N N 32.848 49.359 114.278 -7.062 -2.352 -1.049 H11 SPH 22 SPH H12 2H1 H 0 1 N N N 34.029 49.423 115.513 -6.546 -2.446 0.652 H12 SPH 23 SPH HO1 HO1 H 0 1 N N N 34.915 50.266 113.438 -8.648 -3.295 0.311 HO1 SPH 24 SPH H2 H2 H 0 1 N N N 31.804 50.438 116.337 -7.852 -0.005 -0.631 H2 SPH 25 SPH HN21 1HN2 H 0 0 N N N 32.740 52.335 117.169 -8.107 -0.345 1.717 HN21 SPH 26 SPH HN22 2HN2 H 0 0 N N N 34.088 52.279 116.135 -6.503 -0.441 1.913 HN22 SPH 27 SPH H3 H3 H 0 1 N N N 32.429 52.533 114.243 -4.937 -0.556 0.086 H3 SPH 28 SPH HO3 HO3 H 0 1 N N N 30.555 51.365 113.162 -6.259 -0.126 -2.399 HO3 SPH 29 SPH H4 H4 H 0 1 N N N 30.537 53.173 116.069 -6.283 2.039 -0.962 H4 SPH 30 SPH H5 H5 H 0 1 N N N 28.493 52.354 115.145 -4.436 3.006 0.213 H5 SPH 31 SPH H61 1H6 H 0 1 N N N 29.642 52.913 112.372 -3.537 0.033 0.220 H61 SPH 32 SPH H62 2H6 H 0 1 N N N 28.012 53.044 112.789 -3.333 1.075 1.648 H62 SPH 33 SPH H71 1H7 H 0 1 N N N 28.450 55.290 113.993 -1.874 2.590 0.336 H71 SPH 34 SPH H72 2H7 H 0 1 N N N 30.111 55.150 113.715 -2.077 1.549 -1.093 H72 SPH 35 SPH H81 1H8 H 0 1 N N N 29.624 54.977 111.105 -1.069 -0.348 0.145 H81 SPH 36 SPH H82 2H8 H 0 1 N N N 27.983 55.195 111.415 -0.865 0.694 1.574 H82 SPH 37 SPH H91 1H9 H 0 1 N N N 29.301 57.271 113.022 0.595 2.209 0.262 H91 SPH 38 SPH H92 2H9 H 0 1 N N N 30.191 57.230 111.570 0.391 1.167 -1.167 H92 SPH 39 SPH H101 1H10 H 0 0 N N N 27.834 57.333 110.291 1.399 -0.729 0.071 H101 SPH 40 SPH H102 2H10 H 0 0 N N N 27.128 57.660 111.792 1.603 0.312 1.500 H102 SPH 41 SPH H111 1H11 H 0 0 N N N 28.819 59.639 112.153 3.063 1.827 0.188 H111 SPH 42 SPH H112 2H11 H 0 0 N N N 29.519 59.314 110.651 2.859 0.786 -1.241 H112 SPH 43 SPH H121 1H12 H 0 0 N N N 27.901 60.866 109.916 3.867 -1.111 -0.003 H121 SPH 44 SPH H122 2H12 H 0 0 N N N 27.006 59.434 109.641 4.071 -0.069 1.426 H122 SPH 45 SPH H131 1H13 H 0 0 N N N 25.707 59.720 111.812 5.531 1.446 0.114 H131 SPH 46 SPH H132 2H13 H 0 0 N N N 26.725 60.924 112.365 5.327 0.404 -1.315 H132 SPH 47 SPH H141 1H14 H 0 0 N N N 26.259 62.296 110.113 6.336 -1.492 -0.077 H141 SPH 48 SPH H142 2H14 H 0 0 N N N 25.138 61.099 109.667 6.539 -0.451 1.352 H142 SPH 49 SPH H151 1H15 H 0 0 N N N 23.738 61.548 111.806 7.999 1.065 0.040 H151 SPH 50 SPH H152 2H15 H 0 0 N N N 24.886 62.640 112.378 7.795 0.023 -1.389 H152 SPH 51 SPH H161 1H16 H 0 0 N N N 24.650 63.989 110.076 8.804 -1.874 -0.151 H161 SPH 52 SPH H162 2H16 H 0 0 N N N 23.379 62.940 109.653 9.007 -0.832 1.278 H162 SPH 53 SPH H171 1H17 H 0 0 N N N 22.025 63.630 111.721 10.467 0.683 -0.034 H171 SPH 54 SPH H172 2H17 H 0 0 N N N 23.323 64.545 112.327 10.263 -0.358 -1.463 H172 SPH 55 SPH H181 1H18 H 0 0 N N N 21.679 66.100 111.118 11.476 -1.213 1.204 H181 SPH 56 SPH H182 2H18 H 0 0 N N N 23.254 66.069 110.172 11.272 -2.255 -0.225 H182 SPH 57 SPH H183 3H18 H 0 0 N N N 21.956 65.155 109.566 12.385 -0.868 -0.286 H183 SPH 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SPH C1 O1 SING N N 1 SPH C1 C2 SING N N 2 SPH C1 H11 SING N N 3 SPH C1 H12 SING N N 4 SPH O1 HO1 SING N N 5 SPH C2 N2 SING N N 6 SPH C2 C3 SING N N 7 SPH C2 H2 SING N N 8 SPH N2 HN21 SING N N 9 SPH N2 HN22 SING N N 10 SPH C3 O3 SING N N 11 SPH C3 C4 SING N N 12 SPH C3 H3 SING N N 13 SPH O3 HO3 SING N N 14 SPH C4 C5 DOUB N Z 15 SPH C4 H4 SING N N 16 SPH C5 C6 SING N N 17 SPH C5 H5 SING N N 18 SPH C6 C7 SING N N 19 SPH C6 H61 SING N N 20 SPH C6 H62 SING N N 21 SPH C7 C8 SING N N 22 SPH C7 H71 SING N N 23 SPH C7 H72 SING N N 24 SPH C8 C9 SING N N 25 SPH C8 H81 SING N N 26 SPH C8 H82 SING N N 27 SPH C9 C10 SING N N 28 SPH C9 H91 SING N N 29 SPH C9 H92 SING N N 30 SPH C10 C11 SING N N 31 SPH C10 H101 SING N N 32 SPH C10 H102 SING N N 33 SPH C11 C12 SING N N 34 SPH C11 H111 SING N N 35 SPH C11 H112 SING N N 36 SPH C12 C13 SING N N 37 SPH C12 H121 SING N N 38 SPH C12 H122 SING N N 39 SPH C13 C14 SING N N 40 SPH C13 H131 SING N N 41 SPH C13 H132 SING N N 42 SPH C14 C15 SING N N 43 SPH C14 H141 SING N N 44 SPH C14 H142 SING N N 45 SPH C15 C16 SING N N 46 SPH C15 H151 SING N N 47 SPH C15 H152 SING N N 48 SPH C16 C17 SING N N 49 SPH C16 H161 SING N N 50 SPH C16 H162 SING N N 51 SPH C17 C18 SING N N 52 SPH C17 H171 SING N N 53 SPH C17 H172 SING N N 54 SPH C18 H181 SING N N 55 SPH C18 H182 SING N N 56 SPH C18 H183 SING N N 57 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SPH SMILES ACDLabs 10.04 "OCC(N)C(O)\C=C/CCCCCCCCCCCCC" SPH SMILES_CANONICAL CACTVS 3.341 "CCCCCCCCCCCCC\C=C/[C@H](O)[C@H](N)CO" SPH SMILES CACTVS 3.341 "CCCCCCCCCCCCCC=C[CH](O)[CH](N)CO" SPH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCCCCC=C[C@@H]([C@@H](CO)N)O" SPH SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCCCCC=CC(C(CO)N)O" SPH InChI InChI 1.03 "InChI=1S/C18H37NO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-18(21)17(19)16-20/h14-15,17-18,20-21H,2-13,16,19H2,1H3/t17-,18+/m1/s1" SPH InChIKey InChI 1.03 WWUZIQQURGPMPG-MSOLQXFVSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SPH "SYSTEMATIC NAME" ACDLabs 10.04 "(2R,3S,4Z)-2-aminooctadec-4-ene-1,3-diol" SPH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3S)-2-aminooctadec-4-ene-1,3-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SPH "Create component" 1999-07-08 RCSB SPH "Modify descriptor" 2011-06-04 RCSB ##