data_SPK # _chem_comp.id SPK _chem_comp.name "SPERMINE (FULLY PROTONATED FORM)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAI _chem_comp.formula "C10 H30 N4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 4 _chem_comp.pdbx_initial_date 2001-12-07 _chem_comp.pdbx_modified_date 2011-06-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 206.372 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SPK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1KGK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SPK N1 N1 N 1 1 N N N -9.338 5.195 9.313 -7.975 0.306 0.000 N1 SPK 1 SPK C2 C2 C 0 1 N N N -8.324 4.519 10.217 -6.765 -0.527 0.000 C2 SPK 2 SPK C3 C3 C 0 1 N N N -8.452 4.885 11.644 -5.527 0.372 0.000 C3 SPK 3 SPK C4 C4 C 0 1 N N N -7.718 4.019 12.623 -4.267 -0.496 0.000 C4 SPK 4 SPK N5 N5 N 1 1 N N N -6.306 3.713 12.303 -3.078 0.368 0.000 N5 SPK 5 SPK C6 C6 C 0 1 N N N -5.659 2.964 13.389 -1.868 -0.465 0.000 C6 SPK 6 SPK C7 C7 C 0 1 N N N -4.319 2.413 12.964 -0.630 0.434 0.000 C7 SPK 7 SPK C8 C8 C 0 1 N N N -3.624 1.598 14.016 0.630 -0.434 0.000 C8 SPK 8 SPK C9 C9 C 0 1 N N N -2.451 0.817 13.450 1.868 0.465 0.000 C9 SPK 9 SPK N10 N10 N 1 1 N N N -1.710 0.110 14.542 3.078 -0.368 0.000 N10 SPK 10 SPK C11 C11 C 0 1 N N N -0.697 -0.852 14.014 4.267 0.496 0.000 C11 SPK 11 SPK C12 C12 C 0 1 N N N 0.097 -1.504 15.112 5.527 -0.372 0.000 C12 SPK 12 SPK C13 C13 C 0 1 N N N 1.224 -2.370 14.631 6.765 0.527 0.000 C13 SPK 13 SPK N14 N14 N 1 1 N N N 0.794 -3.631 13.930 7.975 -0.306 0.000 N14 SPK 14 SPK H1A H1A H 0 1 N N N -9.307 4.826 8.504 -7.982 0.888 -0.824 H1A SPK 15 SPK H1B H1B H 0 1 N N N -9.147 6.063 9.250 -7.982 0.888 0.824 H1B SPK 16 SPK H1C H1C H 0 1 N N N -10.153 5.095 9.654 -8.792 -0.287 0.000 H1C SPK 17 SPK H2A H2A H 0 1 N N N -8.423 3.558 10.131 -6.757 -1.156 0.890 H2A SPK 18 SPK H2B H2B H 0 1 N N N -7.433 4.751 9.914 -6.757 -1.156 -0.890 H2B SPK 19 SPK H3A H3A H 0 1 N N N -9.394 4.873 11.876 -5.535 1.001 -0.890 H3A SPK 20 SPK H3B H3B H 0 1 N N N -8.139 5.797 11.751 -5.535 1.001 0.890 H3B SPK 21 SPK H4A H4A H 0 1 N N N -7.745 4.453 13.490 -4.259 -1.125 0.890 H4A SPK 22 SPK H4B H4B H 0 1 N N N -8.198 3.180 12.705 -4.259 -1.125 -0.890 H4B SPK 23 SPK H5A H5A H 0 1 N N N -6.270 3.229 11.545 -3.086 0.950 -0.824 H5A SPK 24 SPK H5B H5B H 0 1 N N N -5.859 4.482 12.163 -3.086 0.950 0.824 H5B SPK 25 SPK H6A H6A H 0 1 N N N -6.235 2.233 13.662 -1.860 -1.095 0.890 H6A SPK 26 SPK H6B H6B H 0 1 N N N -5.537 3.549 14.153 -1.860 -1.095 -0.890 H6B SPK 27 SPK H7A H7A H 0 1 N N N -4.446 1.860 12.177 -0.638 1.063 -0.890 H7A SPK 28 SPK H7B H7B H 0 1 N N N -3.744 3.152 12.714 -0.638 1.063 0.890 H7B SPK 29 SPK H8A H8A H 0 1 N N N -4.258 0.979 14.411 0.638 -1.063 0.890 H8A SPK 30 SPK H8B H8B H 0 1 N N N -3.306 2.187 14.718 0.638 -1.063 -0.890 H8B SPK 31 SPK H9A H9A H 0 1 N N N -2.774 0.169 12.805 1.860 1.095 -0.890 H9A SPK 32 SPK H9B H9B H 0 1 N N N -1.850 1.424 12.991 1.860 1.095 0.890 H9B SPK 33 SPK H101 1H10 H 0 0 N N N -2.299 -0.335 15.056 3.086 -0.950 0.824 H101 SPK 34 SPK H102 2H10 H 0 0 N N N -1.296 0.719 15.059 3.086 -0.950 -0.824 H102 SPK 35 SPK H111 1H11 H 0 0 N N N -0.091 -0.382 13.420 4.259 1.125 -0.890 H111 SPK 36 SPK H112 2H11 H 0 0 N N N -1.148 -1.538 13.498 4.259 1.125 0.890 H112 SPK 37 SPK H121 1H12 H 0 0 N N N 0.460 -0.811 15.685 5.535 -1.001 0.890 H121 SPK 38 SPK H122 2H12 H 0 0 N N N -0.503 -2.045 15.649 5.535 -1.001 -0.890 H122 SPK 39 SPK H131 1H13 H 0 0 N N N 1.775 -2.611 15.392 6.757 1.156 -0.890 H131 SPK 40 SPK H132 2H13 H 0 0 N N N 1.775 -1.851 14.024 6.757 1.156 0.890 H132 SPK 41 SPK H141 1H14 H 0 0 N N N 1.513 -4.084 13.666 7.982 -0.888 0.824 H141 SPK 42 SPK H142 2H14 H 0 0 N N N 0.298 -3.422 13.221 7.982 -0.888 -0.824 H142 SPK 43 SPK H143 3H14 H 0 0 N N N 0.316 -4.132 14.489 8.792 0.287 0.000 H143 SPK 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SPK N1 C2 SING N N 1 SPK N1 H1A SING N N 2 SPK N1 H1B SING N N 3 SPK N1 H1C SING N N 4 SPK C2 C3 SING N N 5 SPK C2 H2A SING N N 6 SPK C2 H2B SING N N 7 SPK C3 C4 SING N N 8 SPK C3 H3A SING N N 9 SPK C3 H3B SING N N 10 SPK C4 N5 SING N N 11 SPK C4 H4A SING N N 12 SPK C4 H4B SING N N 13 SPK N5 C6 SING N N 14 SPK N5 H5A SING N N 15 SPK N5 H5B SING N N 16 SPK C6 C7 SING N N 17 SPK C6 H6A SING N N 18 SPK C6 H6B SING N N 19 SPK C7 C8 SING N N 20 SPK C7 H7A SING N N 21 SPK C7 H7B SING N N 22 SPK C8 C9 SING N N 23 SPK C8 H8A SING N N 24 SPK C8 H8B SING N N 25 SPK C9 N10 SING N N 26 SPK C9 H9A SING N N 27 SPK C9 H9B SING N N 28 SPK N10 C11 SING N N 29 SPK N10 H101 SING N N 30 SPK N10 H102 SING N N 31 SPK C11 C12 SING N N 32 SPK C11 H111 SING N N 33 SPK C11 H112 SING N N 34 SPK C12 C13 SING N N 35 SPK C12 H121 SING N N 36 SPK C12 H122 SING N N 37 SPK C13 N14 SING N N 38 SPK C13 H131 SING N N 39 SPK C13 H132 SING N N 40 SPK N14 H141 SING N N 41 SPK N14 H142 SING N N 42 SPK N14 H143 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SPK SMILES ACDLabs 12.01 "C(CCC[NH2+]CCC[NH3+])[NH2+]CCC[NH3+]" SPK InChI InChI 1.03 InChI=1S/C10H26N4/c11-5-3-9-13-7-1-2-8-14-10-4-6-12/h13-14H,1-12H2/p+4 SPK InChIKey InChI 1.03 PFNFFQXMRSDOHW-UHFFFAOYSA-R SPK SMILES_CANONICAL CACTVS 3.370 "[NH3+]CCC[NH2+]CCCC[NH2+]CCC[NH3+]" SPK SMILES CACTVS 3.370 "[NH3+]CCC[NH2+]CCCC[NH2+]CCC[NH3+]" SPK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C(CC[NH2+]CCC[NH3+])C[NH2+]CCC[NH3+]" SPK SMILES "OpenEye OEToolkits" 1.7.2 "C(CC[NH2+]CCC[NH3+])C[NH2+]CCC[NH3+]" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SPK "SYSTEMATIC NAME" ACDLabs 12.01 "N,N'-bis(3-ammoniopropyl)butane-1,4-diaminium" SPK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "3-azaniumylpropyl-[4-(3-azaniumylpropylazaniumyl)butyl]azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SPK "Create component" 2001-12-07 RCSB SPK "Modify descriptor" 2011-06-04 RCSB SPK "Modify name" 2011-06-07 RCSB SPK "Modify descriptor" 2011-06-07 RCSB SPK "Modify identifier" 2011-06-07 RCSB #