data_SPS
#
_chem_comp.id SPS
_chem_comp.name SPARSOMYCIN
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAD
_chem_comp.formula "C13 H19 N3 O5 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-08-01
_chem_comp.pdbx_modified_date 2012-01-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 361.437
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SPS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1M90
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SPS C1 C1 C 0 1 Y N N 79.016 116.354 101.608 3.709 0.868 0.881 C1 SPS 1
SPS O1 O1 O 0 1 N N N 78.622 117.387 102.111 2.707 1.010 1.556 O1 SPS 2
SPS N2 N2 N 0 1 Y N N 80.267 116.307 101.035 4.875 1.442 1.247 N2 SPS 3
SPS C3 C3 C 0 1 Y N N 80.726 115.173 100.461 5.978 1.282 0.497 C3 SPS 4
SPS O3 O3 O 0 1 N N N 81.812 115.178 99.964 7.013 1.811 0.854 O3 SPS 5
SPS N4 N4 N 0 1 Y N N 80.011 114.028 100.425 5.976 0.557 -0.632 N4 SPS 6
SPS C5 C5 C 0 1 Y N N 78.740 113.939 100.963 4.849 -0.058 -1.080 C5 SPS 7
SPS C7 C7 C 0 1 N N N 77.994 112.646 100.876 4.876 -0.866 -2.351 C7 SPS 8
SPS C6 C6 C 0 1 Y N N 78.159 115.069 101.586 3.679 0.062 -0.352 C6 SPS 9
SPS C8 C8 C 0 1 N N N 76.772 114.998 102.146 2.444 -0.591 -0.797 C8 SPS 10
SPS C9 C9 C 0 1 N N N 76.177 116.039 102.744 1.341 -0.556 -0.013 C9 SPS 11
SPS C10 C10 C 0 1 N N N 74.851 115.912 103.210 0.181 -1.276 -0.392 C10 SPS 12
SPS O10 O10 O 0 1 N N N 74.218 114.878 103.053 0.177 -1.924 -1.422 O10 SPS 13
SPS N11 N11 N 0 1 N N N 74.293 116.937 103.838 -0.917 -1.242 0.388 N11 SPS 14
SPS C12 C12 C 0 1 N N S 72.938 116.858 104.370 -2.117 -1.985 -0.004 C12 SPS 15
SPS C13 C13 C 0 1 N N N 73.026 116.761 105.915 -2.000 -3.433 0.477 C13 SPS 16
SPS O13 O13 O 0 1 N N N 72.062 117.617 106.557 -1.987 -3.461 1.906 O13 SPS 17
SPS C14 C14 C 0 1 N N N 72.198 118.114 103.984 -3.349 -1.336 0.629 C14 SPS 18
SPS S15 S15 S 0 1 N N R 71.819 118.244 102.232 -3.573 0.330 -0.053 S15 SPS 19
SPS O15 O15 O 0 1 N N N 71.500 116.949 101.765 -3.836 0.239 -1.447 O15 SPS 20
SPS C16 C16 C 0 1 N N N 70.309 119.176 102.490 -5.056 0.927 0.804 C16 SPS 21
SPS S17 S17 S 0 1 N N N 69.399 119.243 100.990 -5.444 2.607 0.243 S17 SPS 22
SPS C18 C18 C 0 1 N N N 68.418 117.767 101.182 -6.147 2.335 -1.407 C18 SPS 23
SPS HN2 HN2 H 0 1 N N N 80.867 117.131 101.035 4.916 1.974 2.057 HN2 SPS 24
SPS HN4 HN4 H 0 1 N N N 80.439 113.214 99.982 6.798 0.470 -1.141 HN4 SPS 25
SPS H71 1H7 H 0 1 N N N 76.969 112.574 101.309 5.881 -0.846 -2.774 H71 SPS 26
SPS H72 2H7 H 0 1 N N N 77.951 112.330 99.807 4.595 -1.897 -2.133 H72 SPS 27
SPS H73 3H7 H 0 1 N N N 78.625 111.840 101.318 4.172 -0.442 -3.067 H73 SPS 28
SPS H81 1H8 H 0 1 N N N 76.132 114.099 102.115 2.414 -1.098 -1.749 H81 SPS 29
SPS H91 1H9 H 0 1 N N N 76.759 116.969 102.849 1.345 0.019 0.900 H91 SPS 30
SPS HN11 HN11 H 0 0 N N N 74.888 117.762 103.909 -0.914 -0.725 1.209 HN11 SPS 31
SPS H121 1H12 H 0 0 N N N 72.403 115.967 103.964 -2.216 -1.970 -1.089 H121 SPS 32
SPS H131 1H13 H 0 0 N N N 72.928 115.706 106.262 -2.849 -4.008 0.110 H131 SPS 33
SPS H132 2H13 H 0 0 N N N 74.059 116.968 106.277 -1.075 -3.868 0.098 H132 SPS 34
SPS HO13 HO13 H 0 0 N N N 72.115 117.557 107.503 -1.915 -4.349 2.282 HO13 SPS 35
SPS H141 1H14 H 0 0 N N N 71.269 118.220 104.591 -4.230 -1.939 0.412 H141 SPS 36
SPS H142 2H14 H 0 0 N N N 72.756 119.015 104.329 -3.211 -1.271 1.709 H142 SPS 37
SPS H161 1H16 H 0 0 N N N 69.702 118.770 103.333 -5.894 0.267 0.582 H161 SPS 38
SPS H162 2H16 H 0 0 N N N 70.506 120.190 102.908 -4.875 0.935 1.879 H162 SPS 39
SPS H181 1H18 H 0 0 N N N 67.840 117.809 100.229 -6.421 3.293 -1.848 H181 SPS 40
SPS H182 2H18 H 0 0 N N N 68.981 116.824 101.372 -5.408 1.842 -2.039 H182 SPS 41
SPS H183 3H18 H 0 0 N N N 67.816 117.695 102.118 -7.033 1.705 -1.325 H183 SPS 42
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SPS C1 O1 DOUB N N 1
SPS C1 N2 SING Y N 2
SPS C1 C6 SING Y N 3
SPS N2 C3 SING Y N 4
SPS N2 HN2 SING N N 5
SPS C3 O3 DOUB N N 6
SPS C3 N4 SING Y N 7
SPS N4 C5 SING Y N 8
SPS N4 HN4 SING N N 9
SPS C5 C7 SING N N 10
SPS C5 C6 DOUB Y N 11
SPS C7 H71 SING N N 12
SPS C7 H72 SING N N 13
SPS C7 H73 SING N N 14
SPS C6 C8 SING N N 15
SPS C8 C9 DOUB N E 16
SPS C8 H81 SING N N 17
SPS C9 C10 SING N N 18
SPS C9 H91 SING N N 19
SPS C10 O10 DOUB N N 20
SPS C10 N11 SING N N 21
SPS N11 C12 SING N N 22
SPS N11 HN11 SING N N 23
SPS C12 C13 SING N N 24
SPS C12 C14 SING N N 25
SPS C12 H121 SING N N 26
SPS C13 O13 SING N N 27
SPS C13 H131 SING N N 28
SPS C13 H132 SING N N 29
SPS O13 HO13 SING N N 30
SPS C14 S15 SING N N 31
SPS C14 H141 SING N N 32
SPS C14 H142 SING N N 33
SPS S15 O15 DOUB N N 34
SPS S15 C16 SING N N 35
SPS C16 S17 SING N N 36
SPS C16 H161 SING N N 37
SPS C16 H162 SING N N 38
SPS S17 C18 SING N N 39
SPS C18 H181 SING N N 40
SPS C18 H182 SING N N 41
SPS C18 H183 SING N N 42
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SPS SMILES ACDLabs 10.04 "O=C1NC(=C(\C=C\C(=O)NC(CS(=O)CSC)CO)C(=O)N1)C"
SPS InChI InChI 1.03 "InChI=1S/C13H19N3O5S2/c1-8-10(12(19)16-13(20)14-8)3-4-11(18)15-9(5-17)6-23(21)7-22-2/h3-4,9,17H,5-7H2,1-2H3,(H,15,18)(H2,14,16,19,20)/b4-3+/t9-,23+/m0/s1"
SPS InChIKey InChI 1.03 XKLZIVIOZDNKEQ-CLQLPEFOSA-N
SPS SMILES_CANONICAL CACTVS 3.385 "CSC[S@](=O)C[C@H](CO)NC(=O)/C=C/C1=C(C)NC(=O)NC1=O"
SPS SMILES CACTVS 3.385 "CSC[S](=O)C[CH](CO)NC(=O)C=CC1=C(C)NC(=O)NC1=O"
SPS SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "CC1=C(C(=O)NC(=O)N1)/C=C/C(=O)N[C@@H](CO)C[S@@](=O)CSC"
SPS SMILES "OpenEye OEToolkits" 1.7.5 "CC1=C(C(=O)NC(=O)N1)C=CC(=O)NC(CO)CS(=O)CSC"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SPS "SYSTEMATIC NAME" ACDLabs 10.04 "(2E)-N-[(1S)-2-hydroxy-1-({(R)-[(methylsulfanyl)methyl]sulfinyl}methyl)ethyl]-3-(6-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)prop-2-enamide"
SPS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(E)-N-[(2S)-1-hydroxy-3-[(R)-methylsulfanylmethylsulfinyl]propan-2-yl]-3-(4-methyl-2,6-dioxo-3H-pyrimidin-5-yl)prop-2-enamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SPS "Create component" 2002-08-01 RCSB
SPS "Modify descriptor" 2011-06-04 RCSB
SPS "Modify descriptor" 2012-01-05 RCSB
SPS "Modify coordinates" 2012-01-05 RCSB
#