data_SQS # _chem_comp.id SQS _chem_comp.name "(2S,3R,4E)-2-aminooctadec-4-ene-1,3-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H37 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms D-Sphingosine _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-04-26 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 299.492 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SQS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3VZB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SQS C4 C4 C 0 1 N N N 48.093 61.148 2.176 5.350 -0.917 0.515 C4 SQS 1 SQS C5 C5 C 0 1 N N N 49.013 62.107 2.277 4.362 -1.368 -0.217 C5 SQS 2 SQS C6 C6 C 0 1 N N N 48.571 63.509 2.621 3.047 -1.722 0.429 C6 SQS 3 SQS C7 C7 C 0 1 N N N 48.180 63.584 4.090 1.917 -0.953 -0.259 C7 SQS 4 SQS C8 C8 C 0 1 N N N 49.285 64.162 4.956 0.582 -1.312 0.396 C8 SQS 5 SQS C10 C10 C 0 1 N N N 49.843 64.033 7.412 -1.882 -0.903 0.364 C10 SQS 6 SQS C13 C13 C 0 1 N N N 50.736 64.153 10.940 -5.476 0.276 -0.357 C13 SQS 7 SQS C15 C15 C 0 1 N N N 52.187 62.455 12.239 -7.940 0.686 -0.389 C15 SQS 8 SQS C17 C17 C 0 1 N N N 53.127 60.314 11.244 -10.405 1.096 -0.422 C17 SQS 9 SQS O3 O3 O 0 1 N N N 47.248 58.936 1.701 6.545 -0.682 -1.551 O3 SQS 10 SQS C3 C3 C 0 1 N N R 48.458 59.715 1.840 6.663 -0.557 -0.132 C3 SQS 11 SQS C2 C2 C 0 1 N N S 49.346 59.638 0.582 7.028 0.885 0.224 C2 SQS 12 SQS N2 N2 N 0 1 N N N 49.547 58.246 0.209 7.149 1.014 1.683 N2 SQS 13 SQS C1 C1 C 0 1 N N N 48.810 60.412 -0.630 8.361 1.251 -0.432 C1 SQS 14 SQS O1 O1 O 0 1 N N N 49.906 60.899 -1.424 8.646 2.631 -0.197 O1 SQS 15 SQS C9 C9 C 0 1 N N N 48.789 64.393 6.378 -0.547 -0.543 -0.292 C9 SQS 16 SQS C11 C11 C 0 1 N N N 49.395 64.499 8.795 -3.011 -0.133 -0.324 C11 SQS 17 SQS C12 C12 C 0 1 N N N 49.771 63.540 9.923 -4.346 -0.493 0.331 C12 SQS 18 SQS C14 C14 C 0 1 N N N 50.893 63.280 12.191 -6.811 -0.083 0.299 C14 SQS 19 SQS C16 C16 C 0 1 N N N 51.954 60.966 11.973 -9.275 0.327 0.266 C16 SQS 20 SQS C18 C18 C 0 1 N N N 52.695 59.112 10.426 -11.740 0.737 0.234 C18 SQS 21 SQS H1 H1 H 0 1 N N N 47.055 61.399 2.339 5.223 -0.799 1.581 H1 SQS 22 SQS H2 H2 H 0 1 N N N 50.057 61.885 2.115 4.489 -1.487 -1.283 H2 SQS 23 SQS H3 H3 H 0 1 N N N 49.397 64.209 2.427 2.870 -2.793 0.329 H3 SQS 24 SQS H4 H4 H 0 1 N N N 47.706 63.781 1.999 3.077 -1.456 1.485 H4 SQS 25 SQS H5 H5 H 0 1 N N N 47.288 64.220 4.186 2.094 0.118 -0.160 H5 SQS 26 SQS H6 H6 H 0 1 N N N 47.947 62.569 4.446 1.887 -1.220 -1.316 H6 SQS 27 SQS H7 H7 H 0 1 N N N 50.131 63.460 4.978 0.406 -2.384 0.297 H7 SQS 28 SQS H8 H8 H 0 1 N N N 49.615 65.120 4.528 0.613 -1.046 1.452 H8 SQS 29 SQS H9 H9 H 0 1 N N N 49.985 62.942 7.423 -2.059 -1.974 0.264 H9 SQS 30 SQS H10 H10 H 0 1 N N N 50.792 64.524 7.151 -1.852 -0.636 1.420 H10 SQS 31 SQS H11 H11 H 0 1 N N N 51.721 64.272 10.466 -5.299 1.347 -0.258 H11 SQS 32 SQS H12 H12 H 0 1 N N N 50.353 65.139 11.242 -5.506 0.009 -1.413 H12 SQS 33 SQS H13 H13 H 0 1 N N N 52.638 62.567 13.236 -7.764 1.757 -0.290 H13 SQS 34 SQS H14 H14 H 0 1 N N N 52.879 62.843 11.478 -7.971 0.419 -1.446 H14 SQS 35 SQS H15 H15 H 0 1 N N N 53.870 59.988 11.987 -10.228 2.167 -0.323 H15 SQS 36 SQS H16 H16 H 0 1 N N N 53.582 61.055 10.571 -10.435 0.829 -1.478 H16 SQS 37 SQS H17 H17 H 0 1 N N N 46.731 59.010 2.494 5.869 -0.112 -1.941 H17 SQS 38 SQS H18 H18 H 0 1 N N N 49.041 59.312 2.681 7.442 -1.229 0.229 H18 SQS 39 SQS H19 H19 H 0 1 N N N 50.323 60.072 0.844 6.249 1.557 -0.137 H19 SQS 40 SQS H20 H20 H 0 1 N N N 49.896 57.737 0.996 7.865 0.401 2.042 H20 SQS 41 SQS H21 H21 H 0 1 N N N 48.677 57.851 -0.084 7.326 1.971 1.948 H21 SQS 42 SQS H23 H23 H 0 1 N N N 48.206 61.263 -0.281 9.156 0.638 -0.006 H23 SQS 43 SQS H24 H24 H 0 1 N N N 48.185 59.745 -1.242 8.299 1.070 -1.505 H24 SQS 44 SQS H25 H25 H 0 1 N N N 49.568 61.377 -2.172 9.478 2.933 -0.585 H25 SQS 45 SQS H26 H26 H 0 1 N N N 48.525 65.454 6.494 -0.370 0.528 -0.193 H26 SQS 46 SQS H27 H27 H 0 1 N N N 47.897 63.772 6.549 -0.577 -0.810 -1.348 H27 SQS 47 SQS H28 H28 H 0 1 N N N 49.861 65.474 9.000 -2.835 0.938 -0.225 H28 SQS 48 SQS H29 H29 H 0 1 N N N 48.301 64.610 8.785 -3.042 -0.400 -1.381 H29 SQS 49 SQS H30 H30 H 0 1 N N N 48.852 63.242 10.449 -4.316 -0.226 1.388 H30 SQS 50 SQS H31 H31 H 0 1 N N N 50.246 62.651 9.482 -4.523 -1.564 0.232 H31 SQS 51 SQS H32 H32 H 0 1 N N N 50.873 63.938 13.073 -6.988 -1.154 0.199 H32 SQS 52 SQS H33 H33 H 0 1 N N N 50.042 62.585 12.233 -6.780 0.184 1.355 H33 SQS 53 SQS H34 H34 H 0 1 N N N 51.049 60.855 11.357 -9.452 -0.744 0.167 H34 SQS 54 SQS H35 H35 H 0 1 N N N 51.808 60.454 12.935 -9.245 0.594 1.322 H35 SQS 55 SQS H36 H36 H 0 1 N N N 53.570 58.678 9.921 -11.917 -0.334 0.134 H36 SQS 56 SQS H37 H37 H 0 1 N N N 52.244 58.360 11.090 -11.709 1.003 1.290 H37 SQS 57 SQS H38 H38 H 0 1 N N N 51.957 59.427 9.674 -12.544 1.285 -0.257 H38 SQS 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SQS O1 C1 SING N N 1 SQS C1 C2 SING N N 2 SQS N2 C2 SING N N 3 SQS C2 C3 SING N N 4 SQS O3 C3 SING N N 5 SQS C3 C4 SING N N 6 SQS C4 C5 DOUB N E 7 SQS C5 C6 SING N N 8 SQS C6 C7 SING N N 9 SQS C7 C8 SING N N 10 SQS C8 C9 SING N N 11 SQS C9 C10 SING N N 12 SQS C10 C11 SING N N 13 SQS C11 C12 SING N N 14 SQS C12 C13 SING N N 15 SQS C18 C17 SING N N 16 SQS C13 C14 SING N N 17 SQS C17 C16 SING N N 18 SQS C16 C15 SING N N 19 SQS C14 C15 SING N N 20 SQS C4 H1 SING N N 21 SQS C5 H2 SING N N 22 SQS C6 H3 SING N N 23 SQS C6 H4 SING N N 24 SQS C7 H5 SING N N 25 SQS C7 H6 SING N N 26 SQS C8 H7 SING N N 27 SQS C8 H8 SING N N 28 SQS C10 H9 SING N N 29 SQS C10 H10 SING N N 30 SQS C13 H11 SING N N 31 SQS C13 H12 SING N N 32 SQS C15 H13 SING N N 33 SQS C15 H14 SING N N 34 SQS C17 H15 SING N N 35 SQS C17 H16 SING N N 36 SQS O3 H17 SING N N 37 SQS C3 H18 SING N N 38 SQS C2 H19 SING N N 39 SQS N2 H20 SING N N 40 SQS N2 H21 SING N N 41 SQS C1 H23 SING N N 42 SQS C1 H24 SING N N 43 SQS O1 H25 SING N N 44 SQS C9 H26 SING N N 45 SQS C9 H27 SING N N 46 SQS C11 H28 SING N N 47 SQS C11 H29 SING N N 48 SQS C12 H30 SING N N 49 SQS C12 H31 SING N N 50 SQS C14 H32 SING N N 51 SQS C14 H33 SING N N 52 SQS C16 H34 SING N N 53 SQS C16 H35 SING N N 54 SQS C18 H36 SING N N 55 SQS C18 H37 SING N N 56 SQS C18 H38 SING N N 57 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SQS SMILES ACDLabs 12.01 "OCC(N)C(O)/C=C/CCCCCCCCCCCCC" SQS InChI InChI 1.03 "InChI=1S/C18H37NO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-18(21)17(19)16-20/h14-15,17-18,20-21H,2-13,16,19H2,1H3/b15-14+/t17-,18+/m0/s1" SQS InChIKey InChI 1.03 WWUZIQQURGPMPG-KRWOKUGFSA-N SQS SMILES_CANONICAL CACTVS 3.370 "CCCCCCCCCCCCC/C=C/[C@@H](O)[C@@H](N)CO" SQS SMILES CACTVS 3.370 "CCCCCCCCCCCCCC=C[CH](O)[CH](N)CO" SQS SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCCCCCCCCCC/C=C/[C@H]([C@H](CO)N)O" SQS SMILES "OpenEye OEToolkits" 1.7.6 "CCCCCCCCCCCCCC=CC(C(CO)N)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SQS "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,3R,4E)-2-aminooctadec-4-ene-1,3-diol" SQS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(E,2S,3R)-2-azanyloctadec-4-ene-1,3-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SQS "Create component" 2013-04-26 PDBJ SQS "Initial release" 2013-05-08 RCSB SQS "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id SQS _pdbx_chem_comp_synonyms.name D-Sphingosine _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##