data_SR1
#

_chem_comp.id                                   SR1
_chem_comp.name                                 5-S-methyl-5-thio-alpha-D-ribofuranose
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5-S-methyl-5-thio-alpha-D-ribose; 5-S-methyl-5-thio-D-ribose; 5-S-methyl-5-thio-ribose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2005-03-31
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       180.222
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SR1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1Z5N
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  SR1  5-S-methyl-5-thio-alpha-D-ribose  PDB  ?  
2  SR1  5-S-methyl-5-thio-D-ribose        PDB  ?  
3  SR1  5-S-methyl-5-thio-ribose          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SR1  CS   CS      C  0  1  N  N  N  56.725  68.946  22.794   4.218   0.020  -0.475  CS   SR1   1  
SR1  S    S       S  0  1  N  N  N  56.082  70.572  23.239   2.747   0.371   0.528  S    SR1   2  
SR1  C5   "C5'"   C  0  1  N  N  N  56.965  71.593  22.048   1.490  -0.512  -0.437  C5   SR1   3  
SR1  C4   "C4'"   C  0  1  N  N  S  58.391  71.873  22.477   0.125  -0.353   0.236  C4   SR1   4  
SR1  O4   "O4'"   O  0  1  N  N  N  59.143  72.332  21.317  -0.292   1.016   0.171  O4   SR1   5  
SR1  C1   "C1'"   C  0  1  N  N  S  59.405  73.720  21.437  -1.505   1.123  -0.590  C1   SR1   6  
SR1  O1   "O1'"   O  0  1  N  Y  N  60.794  73.919  21.775  -2.354   2.127  -0.030  O1   SR1   7  
SR1  C2   "C2'"   C  0  1  N  N  R  58.513  74.207  22.573  -2.174  -0.270  -0.484  C2   SR1   8  
SR1  O2   "O2'"   O  0  1  N  N  N  59.023  75.390  23.137  -2.891  -0.405   0.745  O2   SR1   9  
SR1  C3   "C3'"   C  0  1  N  N  S  58.550  72.995  23.498  -0.928  -1.200  -0.510  C3   SR1  10  
SR1  O3   "O3'"   O  0  1  N  N  N  59.812  72.870  24.160  -1.191  -2.422   0.182  O3   SR1  11  
SR1  HS1  HS1     H  0  1  N  N  N  56.178  68.313  23.531   5.088   0.492  -0.020  HS1  SR1  12  
SR1  HS2  HS2     H  0  1  N  N  N  56.610  68.654  21.724   4.374  -1.058  -0.525  HS2  SR1  13  
SR1  HS3  HS3     H  0  1  N  N  N  57.835  68.845  22.795   4.074   0.414  -1.481  HS3  SR1  14  
SR1  H51  "H5'1"  H  0  1  N  N  N  56.932  71.142  21.028   1.449  -0.098  -1.445  H51  SR1  15  
SR1  H52  "H5'2"  H  0  1  N  N  N  56.413  72.539  21.841   1.748  -1.570  -0.489  H52  SR1  16  
SR1  H4   "H4'"   H  0  1  N  N  N  58.744  70.917  22.929   0.187  -0.672   1.276  H4   SR1  17  
SR1  H1   "H1'"   H  0  1  N  N  N  59.201  74.272  20.490  -1.280   1.357  -1.630  H1   SR1  18  
SR1  HO1  "HO'1"  H  0  1  N  Y  N  60.969  74.849  21.855  -1.871   2.963  -0.082  HO1  SR1  19  
SR1  H2   "H2'"   H  0  1  N  N  N  57.474  74.498  22.292  -2.824  -0.460  -1.338  H2   SR1  20  
SR1  HO2  "HO'2"  H  0  1  N  Y  N  58.467  75.693  23.845  -3.581   0.272   0.742  HO2  SR1  21  
SR1  H3   "H3'"   H  0  1  N  N  N  57.792  73.023  24.315  -0.612  -1.396  -1.534  H3   SR1  22  
SR1  HO3  "HO'3"  H  0  1  N  Y  N  59.911  73.568  24.795  -1.917  -2.857  -0.285  HO3  SR1  23  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SR1  CS  S    SING  N  N   1  
SR1  CS  HS1  SING  N  N   2  
SR1  CS  HS2  SING  N  N   3  
SR1  CS  HS3  SING  N  N   4  
SR1  S   C5   SING  N  N   5  
SR1  C5  C4   SING  N  N   6  
SR1  C5  H51  SING  N  N   7  
SR1  C5  H52  SING  N  N   8  
SR1  C4  O4   SING  N  N   9  
SR1  C4  C3   SING  N  N  10  
SR1  C4  H4   SING  N  N  11  
SR1  O4  C1   SING  N  N  12  
SR1  C1  O1   SING  N  N  13  
SR1  C1  C2   SING  N  N  14  
SR1  C1  H1   SING  N  N  15  
SR1  O1  HO1  SING  N  N  16  
SR1  C2  O2   SING  N  N  17  
SR1  C2  C3   SING  N  N  18  
SR1  C2  H2   SING  N  N  19  
SR1  O2  HO2  SING  N  N  20  
SR1  C3  O3   SING  N  N  21  
SR1  C3  H3   SING  N  N  22  
SR1  O3  HO3  SING  N  N  23  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SR1  SMILES            ACDLabs               10.04  "OC1C(OC(O)C1O)CSC"  
SR1  SMILES_CANONICAL  CACTVS                3.341  "CSC[C@H]1O[C@H](O)[C@H](O)[C@@H]1O"  
SR1  SMILES            CACTVS                3.341  "CSC[CH]1O[CH](O)[CH](O)[CH]1O"  
SR1  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CSC[C@@H]1[C@H]([C@H]([C@H](O1)O)O)O"  
SR1  SMILES            "OpenEye OEToolkits"  1.5.0  "CSCC1C(C(C(O1)O)O)O"  
SR1  InChI             InChI                 1.03   "InChI=1S/C6H12O4S/c1-11-2-3-4(7)5(8)6(9)10-3/h3-9H,2H2,1H3/t3-,4-,5-,6+/m1/s1"  
SR1  InChIKey          InChI                 1.03   OLVVOVIFTBSBBH-KAZBKCHUSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SR1  "SYSTEMATIC NAME"            ACDLabs               10.04  5-S-methyl-5-thio-alpha-D-ribofuranose  
SR1  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.5.0  "(2S,3R,4S,5S)-5-(methylsulfanylmethyl)oxolane-2,3,4-triol"  
SR1  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    a-D-Ribf5SMe  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
SR1  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
SR1  "CARBOHYDRATE RING"                    furanose  PDB  ?  
SR1  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
SR1  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SR1  "Create component"          2005-03-31  RCSB  
SR1  "Modify descriptor"         2011-06-04  RCSB  
SR1  "Other modification"        2020-07-03  RCSB  
SR1  "Modify name"               2020-07-17  RCSB  
SR1  "Modify synonyms"           2020-07-17  RCSB  
SR1  "Modify internal type"      2020-07-17  RCSB  
SR1  "Modify linking type"       2020-07-17  RCSB  
SR1  "Modify atom id"            2020-07-17  RCSB  
SR1  "Modify component atom id"  2020-07-17  RCSB  
SR1  "Modify leaving atom flag"  2020-07-17  RCSB  
##