data_SRC # _chem_comp.id SRC _chem_comp.name "[[(2~{R},3~{S},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1,8-dihydropurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H20 N5 O14 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-19 _chem_comp.pdbx_modified_date 2023-12-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 539.223 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SRC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8C0G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SRC C5 C1 C 0 1 N N R N N N 25.955 83.871 -11.815 3.183 1.156 1.435 C5 SRC 1 SRC C7 C2 C 0 1 N N R N N N 24.094 84.940 -10.815 1.337 2.118 0.466 C7 SRC 2 SRC C8 C3 C 0 1 N N N N N N 23.071 84.533 -9.784 0.333 1.990 -0.681 C8 SRC 3 SRC C22 C4 C 0 1 N N S N N N 23.731 84.653 -12.276 2.502 3.048 0.060 C22 SRC 4 SRC C24 C5 C 0 1 N N S N N N 25.108 84.491 -12.954 3.744 2.401 0.712 C24 SRC 5 SRC C26 C6 C 0 1 N N N N N N 26.811 81.739 -12.858 4.552 -0.572 0.171 C26 SRC 6 SRC C28 C7 C 0 1 N N N N N N 28.206 81.398 -14.585 4.746 -1.031 -2.091 C28 SRC 7 SRC C1 C8 C 0 1 N N N N N N 25.279 79.003 -11.010 6.494 -2.621 2.571 C1 SRC 8 SRC N2 N1 N 0 1 N N N N N N 25.741 80.240 -11.624 5.630 -1.675 1.860 N2 SRC 9 SRC C3 C9 C 0 1 N N N N N N 25.337 81.490 -11.078 4.790 -0.632 2.463 C3 SRC 10 SRC N4 N2 N 0 1 N N N N N N 26.065 82.418 -11.924 4.127 0.039 1.339 N4 SRC 11 SRC O6 O1 O 0 1 N N N N N N 25.332 84.223 -10.587 1.960 0.842 0.734 O6 SRC 12 SRC O9 O2 O 0 1 N N N N N N 22.873 83.103 -9.836 -0.756 1.161 -0.270 O9 SRC 13 SRC P10 P1 P 0 1 N N N N N N 22.502 82.232 -8.545 -2.001 0.809 -1.229 P10 SRC 14 SRC O11 O3 O 0 1 N N N N N N 22.587 83.083 -7.339 -1.485 -0.065 -2.479 O11 SRC 15 SRC O12 O4 O 0 1 N N N N N N 23.266 80.961 -8.567 -2.613 2.063 -1.722 O12 SRC 16 SRC O13 O5 O 0 1 N N N N N N 20.964 81.910 -8.847 -3.095 -0.033 -0.401 O13 SRC 17 SRC P14 P2 P 0 1 N N N N N N 19.729 82.833 -9.273 -4.639 -0.415 -0.654 P14 SRC 18 SRC O15 O6 O 0 1 N N N N N N 20.034 83.467 -10.574 -5.346 0.748 -1.235 O15 SRC 19 SRC O16 O7 O 0 1 N N N N N N 18.473 82.058 -9.126 -4.723 -1.658 -1.674 O16 SRC 20 SRC O17 O8 O 0 1 N N N N N N 19.788 83.936 -8.114 -5.328 -0.819 0.744 O17 SRC 21 SRC P18 P3 P 0 1 N N N N N N 19.834 84.039 -6.475 -6.853 -0.997 1.229 P18 SRC 22 SRC O19 O9 O 0 1 N N N N N N 18.468 84.565 -6.092 -7.527 0.453 1.419 O19 SRC 23 SRC O20 O10 O 0 1 N N N N N N 20.959 84.996 -6.131 -7.608 -1.762 0.212 O20 SRC 24 SRC O21 O11 O 0 1 N N N N N N 20.094 82.632 -5.978 -6.882 -1.790 2.629 O21 SRC 25 SRC O23 O12 O 0 1 N N N N N N 22.836 85.603 -12.876 2.293 4.365 0.573 O23 SRC 26 SRC O25 O13 O 0 1 N N N N N N 25.872 85.246 -13.886 4.342 3.298 1.650 O25 SRC 27 SRC N27 N3 N 0 1 N N N N N N 27.615 82.297 -13.791 4.231 -0.325 -1.110 N27 SRC 28 SRC N29 N4 N 0 1 N N N N N N 29.059 81.810 -15.529 4.385 -0.746 -3.384 N29 SRC 29 SRC N30 N5 N 0 1 N N N N N N 28.024 80.042 -14.470 5.627 -2.042 -1.855 N30 SRC 30 SRC C31 C10 C 0 1 N N N N N N 27.204 79.413 -13.550 5.993 -2.336 -0.590 C31 SRC 31 SRC O32 O14 O 0 1 N N N N N N 27.024 78.198 -13.605 6.783 -3.241 -0.365 O32 SRC 32 SRC C33 C11 C 0 1 N N N N N N 26.603 80.370 -12.676 5.444 -1.590 0.464 C33 SRC 33 SRC H5 H1 H 0 1 N N N N N N 26.961 84.313 -11.860 2.974 1.386 2.480 H5 SRC 34 SRC H7 H2 H 0 1 N N N N N N 24.278 86.020 -10.714 0.843 2.495 1.362 H7 SRC 35 SRC H8A H3 H 0 1 N N N N N N 23.427 84.817 -8.783 -0.043 2.978 -0.947 H8A SRC 36 SRC H8B H4 H 0 1 N N N N N N 22.119 85.042 -9.992 0.824 1.543 -1.545 H8B SRC 37 SRC H22 H5 H 0 1 N N N N N N 23.247 83.665 -12.298 2.609 3.074 -1.024 H22 SRC 38 SRC H1A H8 H 0 1 N N N N N N 24.591 79.237 -10.185 5.928 -3.521 2.812 H1A SRC 39 SRC H1C H9 H 0 1 N N N N N N 24.756 78.394 -11.762 7.343 -2.883 1.939 H1C SRC 40 SRC H1B H10 H 0 1 N N N N N N 26.142 78.443 -10.620 6.855 -2.162 3.492 H1B SRC 41 SRC H3B H11 H 0 1 N N N N N N 25.637 81.585 -10.024 4.049 -1.080 3.125 H3B SRC 42 SRC H3A H12 H 0 1 N N N N N N 24.250 81.635 -11.164 5.407 0.077 3.015 H3A SRC 43 SRC H2 H13 H 0 1 N N N N N N 23.158 82.672 -6.700 -1.071 -0.902 -2.229 H2 SRC 44 SRC H3 H14 H 0 1 N N N N N N 17.994 82.071 -9.946 -4.280 -2.457 -1.357 H3 SRC 45 SRC H4 H15 H 0 1 N N N N N N 18.559 85.423 -5.694 -7.083 1.011 2.072 H4 SRC 46 SRC H6 H16 H 0 1 N N N N N N 20.932 82.603 -5.532 -7.771 -1.933 2.982 H6 SRC 47 SRC H23 H17 H 0 1 N N N N N N 22.023 85.626 -12.386 2.995 4.991 0.347 H23 SRC 48 SRC H25 H18 H 0 1 N N N N N N 26.692 84.799 -14.059 4.657 4.124 1.258 H25 SRC 49 SRC H24 H19 H 0 1 N N N N N N 24.913 83.586 -13.547 4.466 2.107 -0.050 H24 SRC 50 SRC H29B H20 H 0 0 N N N N N N 29.251 82.785 -15.638 4.756 -1.263 -4.116 H29B SRC 51 SRC H29A H21 H 0 0 N N N N N N 29.504 81.143 -16.126 3.759 -0.028 -3.565 H29A SRC 52 SRC H30 H22 H 0 1 N N N N N N 28.528 79.458 -15.107 5.993 -2.549 -2.596 H30 SRC 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SRC N29 C28 SING N N 1 SRC C28 N30 SING N N 2 SRC C28 N27 DOUB N N 3 SRC N30 C31 SING N N 4 SRC N27 C26 SING N N 5 SRC O32 C31 DOUB N N 6 SRC C31 C33 SING N N 7 SRC C24 C22 SING N N 8 SRC C24 C5 SING N N 9 SRC O23 C22 SING N N 10 SRC C26 C33 DOUB N N 11 SRC C26 N4 SING N N 12 SRC C33 N2 SING N N 13 SRC C22 C7 SING N N 14 SRC N4 C5 SING N N 15 SRC N4 C3 SING N N 16 SRC C5 O6 SING N N 17 SRC N2 C3 SING N N 18 SRC N2 C1 SING N N 19 SRC C7 O6 SING N N 20 SRC C7 C8 SING N N 21 SRC O15 P14 DOUB N N 22 SRC O9 C8 SING N N 23 SRC O9 P10 SING N N 24 SRC P14 O16 SING N N 25 SRC P14 O13 SING N N 26 SRC P14 O17 SING N N 27 SRC O13 P10 SING N N 28 SRC O12 P10 DOUB N N 29 SRC P10 O11 SING N N 30 SRC O17 P18 SING N N 31 SRC P18 O20 DOUB N N 32 SRC P18 O19 SING N N 33 SRC P18 O21 SING N N 34 SRC C5 H5 SING N N 35 SRC C7 H7 SING N N 36 SRC C8 H8A SING N N 37 SRC C8 H8B SING N N 38 SRC C22 H22 SING N N 39 SRC C24 H24 SING N N 40 SRC C1 H1A SING N N 41 SRC C1 H1C SING N N 42 SRC C1 H1B SING N N 43 SRC C3 H3B SING N N 44 SRC C3 H3A SING N N 45 SRC O11 H2 SING N N 46 SRC O16 H3 SING N N 47 SRC O19 H4 SING N N 48 SRC O21 H6 SING N N 49 SRC O23 H23 SING N N 50 SRC O25 H25 SING N N 51 SRC N29 H29B SING N N 52 SRC N29 H29A SING N N 53 SRC N30 H30 SING N N 54 SRC C24 O25 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SRC InChI InChI 1.06 "InChI=1S/C11H20N5O14P3/c1-15-3-16(8-5(15)9(19)14-11(12)13-8)10-7(18)6(17)4(28-10)2-27-32(23,24)30-33(25,26)29-31(20,21)22/h4,6-7,10,17-18H,2-3H2,1H3,(H,23,24)(H,25,26)(H2,20,21,22)(H3,12,13,14,19)/t4-,6-,7+,10-/m1/s1" SRC InChIKey InChI 1.06 BUJQMJUTTBGELS-UHTZMRCNSA-N SRC SMILES_CANONICAL CACTVS 3.385 "CN1CN([C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@@H]2O)C3=C1C(=O)NC(=N3)N" SRC SMILES CACTVS 3.385 "CN1CN([CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2O)C3=C1C(=O)NC(=N3)N" SRC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CN(C2=C1C(=O)NC(=N2)N)[C@H]3C([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O" SRC SMILES "OpenEye OEToolkits" 2.0.7 "CN1CN(C2=C1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O" # _pdbx_chem_comp_identifier.comp_id SRC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1,8-dihydropurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SRC "Create component" 2022-12-19 PDBE SRC "Initial release" 2023-12-27 RCSB #