data_SRY # _chem_comp.id SRY _chem_comp.name STREPTOMYCIN _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H39 N7 O12" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "STREPTOMYCIN A" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-08-25 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 581.574 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SRY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1NTA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SRY C11 C11 C 0 1 N N R 6.651 34.161 -1.203 -4.507 0.184 -0.242 C11 SRY 1 SRY N11 N11 N 0 1 N N N 7.760 33.416 -0.486 -5.686 0.670 -0.963 N11 SRY 2 SRY CA1 CA1 C 0 1 N N N 8.902 33.432 -1.157 -6.824 -0.099 -1.017 CA1 SRY 3 SRY NB1 NB1 N 0 1 N N N 9.591 34.506 -1.048 -6.856 -1.324 -0.394 NB1 SRY 4 SRY NC1 NC1 N 0 1 N N N 9.292 32.429 -1.867 -7.873 0.334 -1.659 NC1 SRY 5 SRY C21 C21 C 0 1 N N R 5.865 35.030 -0.203 -3.657 1.374 0.207 C21 SRY 6 SRY O21 O21 O 0 1 N N N 6.753 35.981 0.302 -4.429 2.213 1.068 O21 SRY 7 SRY C31 C31 C 0 1 N N S 4.712 35.791 -0.871 -2.425 0.866 0.961 C31 SRY 8 SRY N31 N31 N 0 1 N N N 3.930 36.635 0.064 -1.611 2.006 1.390 N31 SRY 9 SRY CD1 CD1 C 0 1 N N N 3.954 36.163 1.265 -1.902 2.653 2.568 CD1 SRY 10 SRY NE1 NE1 N 0 1 N N N 4.748 35.211 1.681 -1.138 3.722 2.971 NE1 SRY 11 SRY NF1 NF1 N 0 1 N N N 3.107 36.677 2.068 -2.902 2.252 3.302 NF1 SRY 12 SRY C41 C41 C 0 1 N N R 3.786 34.772 -1.516 -1.599 -0.033 0.039 C41 SRY 13 SRY O41 O41 O 0 1 N N N 2.724 35.481 -2.135 -0.449 -0.507 0.743 O41 SRY 14 SRY C51 C51 C 0 1 N N R 4.566 33.922 -2.559 -2.449 -1.223 -0.410 C51 SRY 15 SRY O51 O51 O 0 1 N N N 3.679 32.980 -3.160 -1.676 -2.063 -1.270 O51 SRY 16 SRY C61 C61 C 0 1 N N S 5.708 33.167 -1.847 -3.680 -0.715 -1.163 C61 SRY 17 SRY O61 O61 O 0 1 N N N 6.441 32.374 -2.795 -4.474 -1.827 -1.582 O61 SRY 18 SRY C12 C12 C 0 1 N N R 1.451 35.087 -1.593 0.684 -0.752 -0.093 C12 SRY 19 SRY C22 C22 C 0 1 N N S 0.436 36.009 -2.260 1.910 -1.140 0.763 C22 SRY 20 SRY C32 C32 C 0 1 N N S -0.011 35.173 -3.379 1.893 -2.684 0.766 C32 SRY 21 SRY O32 O32 O 0 1 N N N -1.371 34.816 -3.124 3.085 -3.200 0.168 O32 SRY 22 SRY CG2 CG2 C 0 1 N N N 0.141 35.947 -4.661 1.739 -3.208 2.170 CG2 SRY 23 SRY OG2 OG2 O 0 1 N N N -0.096 35.511 -5.766 0.791 -3.898 2.457 OG2 SRY 24 SRY C42 C42 C 0 1 N N S 0.795 33.946 -3.401 0.659 -3.048 -0.089 C42 SRY 25 SRY CH2 CH2 C 0 1 N N N 0.177 32.698 -3.951 0.943 -4.291 -0.935 CH2 SRY 26 SRY O42 O42 O 0 1 N N N 1.203 33.777 -2.049 0.447 -1.899 -0.938 O42 SRY 27 SRY O13 O13 O 0 1 N N N -0.430 36.466 -1.371 3.113 -0.653 0.163 O13 SRY 28 SRY C13 C13 C 0 1 N N S 0.183 37.124 -0.318 3.562 0.596 0.692 C13 SRY 29 SRY C23 C23 C 0 1 N N S 0.101 38.634 -0.362 5.014 0.837 0.271 C23 SRY 30 SRY N23 N23 N 0 1 N N N 0.622 39.082 -1.607 5.851 -0.276 0.739 N23 SRY 31 SRY CI3 CI3 C 0 1 N N N 2.032 39.369 -1.403 6.284 -0.061 2.126 CI3 SRY 32 SRY C33 C33 C 0 1 N N S -1.212 39.067 -0.241 5.087 0.925 -1.257 C33 SRY 33 SRY O33 O33 O 0 1 N N N -1.183 40.450 0.007 6.426 1.222 -1.655 O33 SRY 34 SRY C43 C43 C 0 1 N N R -1.892 38.365 0.905 4.150 2.037 -1.738 C43 SRY 35 SRY O43 O43 O 0 1 N N N -3.262 38.635 0.854 4.155 2.081 -3.166 O43 SRY 36 SRY C53 C53 C 0 1 N N S -1.700 36.892 0.779 2.731 1.750 -1.240 C53 SRY 37 SRY O53 O53 O 0 1 N N N -0.327 36.633 0.835 2.740 1.650 0.186 O53 SRY 38 SRY C63 C63 C 0 1 N N N -2.366 36.138 1.947 1.801 2.888 -1.665 C63 SRY 39 SRY O63 O63 O 0 1 N N N -2.278 36.930 3.126 0.457 2.566 -1.302 O63 SRY 40 SRY H11 H11 H 0 1 N N N 7.096 34.807 -1.974 -4.825 -0.386 0.632 H11 SRY 41 SRY HN11 1HN1 H 0 0 N N N 7.642 32.962 0.397 -5.663 1.534 -1.403 HN11 SRY 42 SRY HB11 1HB1 H 0 0 N N N 10.434 34.440 -1.581 -6.076 -1.646 0.084 HB11 SRY 43 SRY HB12 2HB1 H 0 0 N N N 9.323 35.301 -0.504 -7.660 -1.866 -0.432 HB12 SRY 44 SRY HC11 1HC1 H 0 0 N N N 8.623 31.687 -1.826 -7.850 1.198 -2.098 HC11 SRY 45 SRY H21 H21 H 0 1 N N N 5.442 34.373 0.571 -3.339 1.943 -0.666 H21 SRY 46 SRY HO21 1HO2 H 0 0 N N N 6.955 35.777 1.208 -5.227 2.572 0.655 HO21 SRY 47 SRY H31 H31 H 0 1 N N N 5.155 36.477 -1.608 -2.743 0.297 1.834 H31 SRY 48 SRY HN31 1HN3 H 0 0 N N N 3.444 37.467 -0.203 -0.867 2.304 0.844 HN31 SRY 49 SRY HE11 1HE1 H 0 0 N N N 4.611 34.989 2.646 -0.394 4.020 2.425 HE11 SRY 50 SRY HE12 2HE1 H 0 0 N N N 5.420 34.755 1.097 -1.343 4.179 3.802 HE12 SRY 51 SRY HF11 1HF1 H 0 0 N N N 2.549 37.386 1.637 -3.441 1.498 3.018 HF11 SRY 52 SRY H41 H41 H 0 1 N N N 3.385 34.081 -0.760 -1.281 0.536 -0.835 H41 SRY 53 SRY H51 H51 H 0 1 N N N 4.984 34.580 -3.335 -2.767 -1.792 0.464 H51 SRY 54 SRY HO51 1HO5 H 0 0 N N N 3.482 33.252 -4.049 -2.153 -2.839 -1.594 HO51 SRY 55 SRY H61 H61 H 0 1 N N N 5.274 32.511 -1.078 -3.362 -0.146 -2.037 H61 SRY 56 SRY HO61 1HO6 H 0 0 N N N 6.603 32.886 -3.579 -4.012 -2.440 -2.170 HO61 SRY 57 SRY H12 H12 H 0 1 N N N 1.409 35.136 -0.495 0.906 0.127 -0.698 H12 SRY 58 SRY H22 H22 H 0 1 N N N 0.778 36.974 -2.663 1.805 -0.754 1.777 H22 SRY 59 SRY HO32 2HO3 H 0 0 N N N -1.508 34.737 -2.187 3.127 -4.165 0.144 HO32 SRY 60 SRY HG21 1HG2 H 0 0 N N N 0.487 36.968 -4.590 2.477 -2.966 2.921 HG21 SRY 61 SRY H42 H42 H 0 1 N N N 1.611 34.087 -4.125 -0.209 -3.215 0.549 H42 SRY 62 SRY HH21 1HH2 H 0 0 N N N 0.025 32.810 -5.035 1.181 -5.129 -0.280 HH21 SRY 63 SRY HH22 2HH2 H 0 0 N N N 0.844 31.844 -3.761 0.064 -4.534 -1.531 HH22 SRY 64 SRY HH23 3HH2 H 0 0 N N N -0.792 32.523 -3.462 1.788 -4.095 -1.596 HH23 SRY 65 SRY H13 H13 H 0 1 N N N 1.262 36.926 -0.395 3.497 0.575 1.780 H13 SRY 66 SRY H23 H23 H 0 1 N N N 0.682 39.044 0.477 5.370 1.770 0.708 H23 SRY 67 SRY HN23 3HN2 H 0 0 N N N 0.510 38.374 -2.304 5.369 -1.157 0.643 HN23 SRY 68 SRY HI31 1HI3 H 0 0 N N N 2.537 39.442 -2.378 6.862 0.861 2.188 HI31 SRY 69 SRY HI32 2HI3 H 0 0 N N N 2.138 40.322 -0.864 5.410 0.014 2.772 HI32 SRY 70 SRY HI33 3HI3 H 0 0 N N N 2.489 38.561 -0.813 6.903 -0.900 2.447 HI33 SRY 71 SRY H33 H33 H 0 1 N N N -1.770 38.844 -1.162 4.779 -0.026 -1.692 H33 SRY 72 SRY HO33 3HO3 H 0 0 N N N -1.176 40.604 0.944 6.546 1.293 -2.612 HO33 SRY 73 SRY H43 H43 H 0 1 N N N -1.462 38.719 1.854 4.489 2.995 -1.343 H43 SRY 74 SRY HO43 3HO4 H 0 0 N N N -3.606 38.696 1.737 3.582 2.764 -3.541 HO43 SRY 75 SRY H53 H53 H 0 1 N N N -2.151 36.556 -0.166 2.378 0.812 -1.668 H53 SRY 76 SRY H631 1H63 H 0 0 N N N -3.423 35.949 1.708 2.101 3.809 -1.166 H631 SRY 77 SRY H632 2H63 H 0 0 N N N -1.853 35.178 2.108 1.863 3.023 -2.745 H632 SRY 78 SRY HO63 3HO6 H 0 0 N N N -2.258 36.363 3.888 -0.189 3.244 -1.543 HO63 SRY 79 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SRY C11 N11 SING N N 1 SRY C11 C21 SING N N 2 SRY C11 C61 SING N N 3 SRY C11 H11 SING N N 4 SRY N11 CA1 SING N N 5 SRY N11 HN11 SING N N 6 SRY CA1 NB1 SING N N 7 SRY CA1 NC1 DOUB N N 8 SRY NB1 HB11 SING N N 9 SRY NB1 HB12 SING N N 10 SRY NC1 HC11 SING N N 11 SRY C21 O21 SING N N 12 SRY C21 C31 SING N N 13 SRY C21 H21 SING N N 14 SRY O21 HO21 SING N N 15 SRY C31 N31 SING N N 16 SRY C31 C41 SING N N 17 SRY C31 H31 SING N N 18 SRY N31 CD1 SING N N 19 SRY N31 HN31 SING N N 20 SRY CD1 NE1 SING N N 21 SRY CD1 NF1 DOUB N N 22 SRY NE1 HE11 SING N N 23 SRY NE1 HE12 SING N N 24 SRY NF1 HF11 SING N N 25 SRY C41 O41 SING N N 26 SRY C41 C51 SING N N 27 SRY C41 H41 SING N N 28 SRY O41 C12 SING N N 29 SRY C51 O51 SING N N 30 SRY C51 C61 SING N N 31 SRY C51 H51 SING N N 32 SRY O51 HO51 SING N N 33 SRY C61 O61 SING N N 34 SRY C61 H61 SING N N 35 SRY O61 HO61 SING N N 36 SRY C12 C22 SING N N 37 SRY C12 O42 SING N N 38 SRY C12 H12 SING N N 39 SRY C22 C32 SING N N 40 SRY C22 O13 SING N N 41 SRY C22 H22 SING N N 42 SRY C32 O32 SING N N 43 SRY C32 CG2 SING N N 44 SRY C32 C42 SING N N 45 SRY O32 HO32 SING N N 46 SRY CG2 OG2 DOUB N N 47 SRY CG2 HG21 SING N N 48 SRY C42 CH2 SING N N 49 SRY C42 O42 SING N N 50 SRY C42 H42 SING N N 51 SRY CH2 HH21 SING N N 52 SRY CH2 HH22 SING N N 53 SRY CH2 HH23 SING N N 54 SRY O13 C13 SING N N 55 SRY C13 C23 SING N N 56 SRY C13 O53 SING N N 57 SRY C13 H13 SING N N 58 SRY C23 N23 SING N N 59 SRY C23 C33 SING N N 60 SRY C23 H23 SING N N 61 SRY N23 CI3 SING N N 62 SRY N23 HN23 SING N N 63 SRY CI3 HI31 SING N N 64 SRY CI3 HI32 SING N N 65 SRY CI3 HI33 SING N N 66 SRY C33 O33 SING N N 67 SRY C33 C43 SING N N 68 SRY C33 H33 SING N N 69 SRY O33 HO33 SING N N 70 SRY C43 O43 SING N N 71 SRY C43 C53 SING N N 72 SRY C43 H43 SING N N 73 SRY O43 HO43 SING N N 74 SRY C53 O53 SING N N 75 SRY C53 C63 SING N N 76 SRY C53 H53 SING N N 77 SRY C63 O63 SING N N 78 SRY C63 H631 SING N N 79 SRY C63 H632 SING N N 80 SRY O63 HO63 SING N N 81 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SRY SMILES ACDLabs 10.04 "O=CC3(O)C(OC1OC(C(O)C(O)C1NC)CO)C(OC2C(NC(=[N@H])N)C(O)C(NC(=[N@H])N)C(O)C2O)OC3C" SRY InChI InChI 1.03 "InChI=1S/C21H39N7O12/c1-5-21(36,4-30)16(40-17-9(26-2)13(34)10(31)6(3-29)38-17)18(37-5)39-15-8(28-20(24)25)11(32)7(27-19(22)23)12(33)14(15)35/h4-18,26,29,31-36H,3H2,1-2H3,(H4,22,23,27)(H4,24,25,28)/t5-,6-,7+,8-,9-,10-,11+,12-,13-,14+,15+,16-,17-,18-,21+/m0/s1" SRY InChIKey InChI 1.03 UCSJYZPVAKXKNQ-HZYVHMACSA-N SRY SMILES_CANONICAL CACTVS 3.385 "CN[C@H]1[C@H](O)[C@@H](O)[C@H](CO)O[C@H]1O[C@H]2[C@@H](O[C@@H](C)[C@]2(O)C=O)O[C@H]3[C@H](O)[C@@H](O)[C@H](NC(N)=N)[C@@H](O)[C@@H]3NC(N)=N" SRY SMILES CACTVS 3.385 "CN[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[CH]2[CH](O[CH](C)[C]2(O)C=O)O[CH]3[CH](O)[CH](O)[CH](NC(N)=N)[CH](O)[CH]3NC(N)=N" SRY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "[H]/N=C(/N)\N[C@@H]1[C@H]([C@@H]([C@H]([C@@H]([C@H]1O)O)O[C@H]2[C@@H]([C@]([C@@H](O2)C)(C=O)O)O[C@H]3[C@H]([C@@H]([C@H]([C@@H](O3)CO)O)O)NC)N/C(=N\[H])/N)O" SRY SMILES "OpenEye OEToolkits" 1.7.5 "CC1C(C(C(O1)OC2C(C(C(C(C2O)O)NC(=N)N)O)NC(=N)N)OC3C(C(C(C(O3)CO)O)O)NC)(C=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SRY "SYSTEMATIC NAME" ACDLabs 10.04 "N,N'''-[(1R,2R,3S,4R,5R,6S)-4-({5-deoxy-2-O-[2-deoxy-2-(methylamino)-alpha-L-glucopyranosyl]-3-C-formyl-alpha-L-lyxofuranosyl}oxy)-2,5,6-trihydroxycyclohexane-1,3-diyl]diguanidine" SRY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[(1R,2R,3S,4R,5R,6S)-3-carbamimidamido-4-[(2R,3R,4R,5S)-3-[(2S,3S,4S,5R,6S)-4,5-dihydroxy-6-(hydroxymethyl)-3-methylamino-oxan-2-yl]oxy-4-hydroxy-4-methanoyl-5-methyl-oxolan-2-yl]oxy-2,5,6-trihydroxy-cyclohexyl]guanidine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SRY "Create component" 2000-08-25 EBI SRY "Modify descriptor" 2011-06-04 RCSB SRY "Modify descriptor" 2012-01-05 RCSB SRY "Modify coordinates" 2012-01-05 RCSB SRY "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id SRY _pdbx_chem_comp_synonyms.name "STREPTOMYCIN A" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##